Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47055 * 2 1 4 4 O 1.45201 * 109.47153 * 240.00832 * 2 1 3 5 5 C 1.34221 * 117.00608 * 89.99888 * 4 2 1 6 6 O 1.20831 * 119.99887 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00221 * 180.02562 * 5 4 2 8 8 C 1.53009 * 109.47179 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47160 * 179.97438 * 8 7 5 10 10 C 1.52997 * 110.21605 * 300.70032 * 9 8 7 11 11 C 1.54482 * 110.24343 * 178.76814 * 9 8 7 12 12 C 1.54633 * 101.76156 * 215.49613 * 11 9 8 13 13 C 1.51280 * 104.19839 * 24.80215 * 12 11 9 14 14 O 1.21280 * 124.94580 * 163.77874 * 13 12 11 15 15 N 1.34423 * 110.11287 * 343.74712 * 13 12 11 16 16 C 1.50695 * 109.47202 * 120.00360 * 2 1 3 17 17 O 1.21284 * 120.00116 * 120.00004 * 16 2 1 18 18 N 1.34774 * 119.99977 * 300.00068 * 16 2 1 19 19 C 1.46499 * 120.00028 * 0.02562 * 18 16 2 20 20 C 1.46504 * 120.00040 * 179.97438 * 18 16 2 21 21 C 1.50699 * 109.46962 * 89.99764 * 20 18 16 22 22 H 1.07996 * 120.00288 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99940 * 179.97438 * 21 20 18 24 24 N 1.31517 * 120.00188 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99836 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47041 * 90.00122 * 25 23 21 27 27 H 1.48502 * 109.46950 * 209.99906 * 25 23 21 28 28 H 1.48498 * 109.47164 * 329.99619 * 25 23 21 29 29 H 1.09001 * 109.46889 * 299.99991 * 1 2 3 30 30 H 1.09006 * 109.46734 * 59.99445 * 1 2 3 31 31 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47592 * 59.99883 * 7 5 4 33 33 H 1.09001 * 109.47501 * 299.99703 * 7 5 4 34 34 H 1.08995 * 109.46990 * 59.99470 * 8 7 5 35 35 H 1.09000 * 109.46715 * 299.99415 * 8 7 5 36 36 H 1.09002 * 109.47153 * 298.06917 * 10 9 8 37 37 H 1.09001 * 109.46832 * 178.07108 * 10 9 8 38 38 H 1.09004 * 109.47261 * 58.07089 * 10 9 8 39 39 H 1.08999 * 110.97153 * 333.61604 * 11 9 8 40 40 H 1.08993 * 110.96474 * 97.34510 * 11 9 8 41 41 H 1.09004 * 110.48006 * 143.48107 * 12 11 9 42 42 H 1.08995 * 110.48488 * 265.98865 * 12 11 9 43 43 H 0.97000 * 124.35011 * 179.59421 * 15 13 12 44 44 H 1.08997 * 109.46991 * 90.00010 * 19 18 16 45 45 H 1.09000 * 109.46629 * 209.99956 * 19 18 16 46 46 H 1.08998 * 109.46708 * 329.99746 * 19 18 16 47 47 H 1.08999 * 109.47203 * 210.00171 * 20 18 16 48 48 H 1.08999 * 109.47249 * 330.00281 * 20 18 16 49 49 H 0.97001 * 120.00124 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6843 -1.1857 5 6 2.2172 0.0642 -2.2811 6 8 1.9974 1.2519 -2.2505 7 6 2.7183 -0.5769 -3.5495 8 6 2.8636 0.4895 -4.6371 9 6 3.3730 -0.1614 -5.9247 10 6 4.7253 -0.8332 -5.6784 11 6 3.4970 0.8952 -7.0448 12 6 3.0949 0.0783 -8.2947 13 6 2.2291 -1.0350 -7.7475 14 8 1.4885 -1.7293 -8.4112 15 7 2.4004 -1.1433 -6.4186 16 6 2.0324 -0.7105 1.2304 17 8 2.7296 -1.6965 1.1190 18 7 1.7068 -0.2501 2.4545 19 6 0.8640 0.9407 2.5890 20 6 2.1947 -0.9411 3.6506 21 6 3.5224 -0.3582 4.0610 22 1 3.9589 0.4467 3.4885 23 6 4.1794 -0.8518 5.1682 24 7 5.3378 -0.3428 5.5267 25 14 3.4240 -2.2436 6.1590 26 1 3.8840 -3.5460 5.6135 27 1 3.8439 -2.1254 7.5785 28 1 1.9435 -2.1659 6.0727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.0088 -1.3366 -3.8776 33 1 3.6872 -1.0406 -3.3641 34 1 3.5733 1.2488 -4.3088 35 1 1.8949 0.9534 -4.8227 36 1 5.4556 -0.0811 -5.3796 37 1 5.0603 -1.3216 -6.5934 38 1 4.6235 -1.5755 -4.8866 39 1 2.8056 1.7216 -6.8799 40 1 4.5217 1.2572 -7.1278 41 1 2.5266 0.6977 -8.9886 42 1 3.9791 -0.3292 -8.7847 43 1 1.9405 -1.7877 -5.8581 44 1 -0.1838 0.6423 2.6225 45 1 1.1218 1.4661 3.5085 46 1 1.0272 1.5994 1.7360 47 1 1.4766 -0.8156 4.4610 48 1 2.3155 -2.0024 3.4333 49 1 5.8002 -0.6904 6.3053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751508301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = -154.019067 kcal Electronic energy + Delta-G solvation = -29901.088057 eV Core-core repulsion = 25635.613936 eV Total energy + Delta-G solvation = -4265.474121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23254 -40.66587 -39.15150 -37.71126 -36.53123 -35.12192 -33.66197 -32.88053 -31.82644 -31.72189 -29.86414 -28.32330 -26.77580 -26.38081 -24.74611 -23.85080 -22.25640 -21.27487 -20.97040 -20.14325 -18.95722 -18.16680 -17.19728 -17.00271 -16.80551 -16.66222 -16.40839 -15.90714 -15.48749 -15.20703 -14.89951 -14.58788 -14.48241 -14.07885 -13.98445 -13.62720 -13.55348 -13.30896 -13.10599 -12.98562 -12.82200 -12.66127 -12.49116 -12.39499 -12.30432 -12.08590 -11.87211 -11.62114 -11.55731 -11.38996 -11.33988 -11.15350 -11.01730 -10.76568 -10.62459 -10.57004 -10.23326 -10.20401 -9.60588 -9.57275 -9.08172 -8.64274 -7.85339 -6.13915 -4.13622 2.05969 2.23281 2.36721 2.91095 3.11966 3.25457 3.31298 3.33248 3.68082 3.77969 3.95549 4.17185 4.34593 4.35977 4.43678 4.56222 4.66614 4.71723 4.74293 4.86813 4.97385 5.00226 5.03291 5.14429 5.19139 5.24132 5.32394 5.35850 5.40952 5.46058 5.51444 5.54623 5.55865 5.64015 5.70978 5.79652 5.89200 6.11409 6.35038 6.41552 6.59394 6.63488 6.84284 7.17776 7.53193 7.61731 7.87640 8.04931 8.39438 8.76195 8.89156 9.45330 10.99283 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002042 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.357868 B =13711.766442 C =14110.405224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.326 6.326 5 C 0.462 3.538 6 O -0.510 6.510 7 C -0.118 4.118 8 C -0.110 4.110 9 C 0.156 3.844 10 C -0.165 4.165 11 C -0.123 4.123 12 C -0.157 4.157 13 C 0.520 3.480 14 O -0.537 6.537 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.519 6.519 18 N -0.591 5.591 19 C 0.075 3.925 20 C 0.217 3.783 21 C -0.532 4.532 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.266 1.266 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.409 0.591 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.038 0.962 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 4.305 -23.105 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 H 0.126 0.874 4 O -0.241 6.241 5 C 0.305 3.695 6 O -0.399 6.399 7 C -0.156 4.156 8 C -0.148 4.148 9 C 0.070 3.930 10 C -0.223 4.223 11 C -0.161 4.161 12 C -0.197 4.197 13 C 0.307 3.693 14 O -0.414 6.414 15 N -0.379 5.379 16 C 0.295 3.705 17 O -0.394 6.394 18 N -0.324 5.324 19 C -0.068 4.068 20 C 0.097 3.903 21 C -0.571 4.571 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.248 0.752 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.659 3.823 -23.385 24.614 hybrid contribution -0.405 -0.755 1.085 1.383 sum -7.064 3.068 -22.300 23.592 Atomic orbital electron populations 1.22406 0.92394 1.04063 1.04400 1.22570 0.95645 0.97711 0.82793 0.87429 1.86602 1.76402 1.41522 1.19586 1.23678 0.74246 0.85971 0.85636 1.90656 1.48242 1.16584 1.84387 1.21475 1.04456 0.99961 0.89663 1.21785 1.03923 0.97412 0.91693 1.21082 0.89178 0.88639 0.94134 1.22310 0.95359 1.01728 1.02883 1.22711 1.04009 0.97066 0.92292 1.22362 1.01177 0.97025 0.99114 1.20887 0.81590 0.84417 0.82447 1.90771 1.39673 1.48374 1.62600 1.46476 1.44557 1.37744 1.09133 1.19791 0.81486 0.85354 0.83825 1.90706 1.36750 1.26085 1.85882 1.47725 1.50079 1.28519 1.06123 1.21919 0.93701 0.87832 1.03383 1.19728 0.95512 0.93729 0.81341 1.21304 1.03106 1.20478 1.12176 0.90738 1.24863 0.94640 0.96484 0.97019 1.69895 1.14738 1.42219 1.26515 0.86838 0.80015 0.83216 0.79541 1.19839 1.20996 1.19036 0.88841 0.91292 0.91036 0.87961 0.86759 0.88875 0.89901 0.90542 0.91792 0.91274 0.89439 0.88701 0.87992 0.87740 0.75162 0.92892 0.90055 0.91949 0.94804 0.94356 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.18 37.16 0.34 -1.76 16 2 C 0.07 1.12 2.18 -27.88 -0.06 1.06 16 3 H 0.11 1.65 6.42 -51.93 -0.33 1.32 16 4 O -0.33 -5.04 9.41 -45.88 -0.43 -5.47 16 5 C 0.46 5.79 7.93 36.00 0.29 6.08 16 6 O -0.51 -7.23 15.20 -18.75 -0.29 -7.52 16 7 C -0.12 -0.93 5.32 -27.88 -0.15 -1.08 16 8 C -0.11 -0.70 3.71 -26.73 -0.10 -0.80 16 9 C 0.16 0.80 0.87 -130.90 -0.11 0.68 16 10 C -0.16 -0.76 8.47 37.16 0.31 -0.45 16 11 C -0.12 -0.48 6.21 -25.09 -0.16 -0.63 16 12 C -0.16 -0.81 6.86 -26.74 -0.18 -0.99 16 13 C 0.52 4.62 8.43 -10.86 -0.09 4.53 16 14 O -0.54 -7.28 18.03 5.56 0.10 -7.18 16 15 N -0.72 -4.85 5.39 -46.61 -0.25 -5.10 16 16 C 0.51 10.45 7.15 -10.99 -0.08 10.37 16 17 O -0.52 -12.90 16.08 -14.10 -0.23 -13.12 16 18 N -0.59 -11.86 2.86 -182.96 -0.52 -12.38 16 19 C 0.08 1.09 8.80 59.85 0.53 1.62 16 20 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 21 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 22 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 23 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 24 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 25 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 29 H 0.09 0.97 4.53 -51.93 -0.24 0.74 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.64 6.90 -51.93 -0.36 0.28 16 33 H 0.11 0.81 6.43 -51.93 -0.33 0.47 16 34 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.35 6.39 -51.93 -0.33 0.01 16 39 H 0.09 0.32 7.91 -51.93 -0.41 -0.09 16 40 H 0.09 0.22 7.89 -51.93 -0.41 -0.19 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.41 2.57 7.70 -40.82 -0.31 2.25 16 44 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 45 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 46 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 47 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 48 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 49 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -38.34 394.49 -7.01 -45.35 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.51 Total: -0.91 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 0.07 Total: 10.37 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.00 Total: -43.99 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.84 Total: -33.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.34 -7.01 -45.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751508301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.673 kcal (2) G-P(sol) polarization free energy of solvation -38.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds