Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47055 * 2 1 4 4 O 1.45201 * 109.47153 * 240.00832 * 2 1 3 5 5 C 1.34221 * 117.00608 * 89.99888 * 4 2 1 6 6 O 1.20831 * 119.99887 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00221 * 180.02562 * 5 4 2 8 8 C 1.53009 * 109.47179 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47160 * 179.97438 * 8 7 5 10 10 C 1.52997 * 110.21605 * 300.70032 * 9 8 7 11 11 C 1.54482 * 110.24343 * 178.76814 * 9 8 7 12 12 C 1.54633 * 101.76156 * 215.49613 * 11 9 8 13 13 C 1.51280 * 104.19839 * 24.80215 * 12 11 9 14 14 O 1.21280 * 124.94580 * 163.77874 * 13 12 11 15 15 N 1.34423 * 110.11287 * 343.74712 * 13 12 11 16 16 C 1.50695 * 109.47202 * 120.00360 * 2 1 3 17 17 O 1.21284 * 120.00116 * 120.00004 * 16 2 1 18 18 N 1.34774 * 119.99977 * 300.00068 * 16 2 1 19 19 C 1.46499 * 120.00028 * 0.02562 * 18 16 2 20 20 C 1.46504 * 120.00040 * 179.97438 * 18 16 2 21 21 C 1.50699 * 109.46962 * 89.99764 * 20 18 16 22 22 H 1.07996 * 120.00288 * 0.02562 * 21 20 18 23 23 C 1.37879 * 119.99940 * 179.97438 * 21 20 18 24 24 N 1.31517 * 120.00188 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99836 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47041 * 90.00122 * 25 23 21 27 27 H 1.48502 * 109.46950 * 209.99906 * 25 23 21 28 28 H 1.48498 * 109.47164 * 329.99619 * 25 23 21 29 29 H 1.09001 * 109.46889 * 299.99991 * 1 2 3 30 30 H 1.09006 * 109.46734 * 59.99445 * 1 2 3 31 31 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47592 * 59.99883 * 7 5 4 33 33 H 1.09001 * 109.47501 * 299.99703 * 7 5 4 34 34 H 1.08995 * 109.46990 * 59.99470 * 8 7 5 35 35 H 1.09000 * 109.46715 * 299.99415 * 8 7 5 36 36 H 1.09002 * 109.47153 * 298.06917 * 10 9 8 37 37 H 1.09001 * 109.46832 * 178.07108 * 10 9 8 38 38 H 1.09004 * 109.47261 * 58.07089 * 10 9 8 39 39 H 1.08999 * 110.97153 * 333.61604 * 11 9 8 40 40 H 1.08993 * 110.96474 * 97.34510 * 11 9 8 41 41 H 1.09004 * 110.48006 * 143.48107 * 12 11 9 42 42 H 1.08995 * 110.48488 * 265.98865 * 12 11 9 43 43 H 0.97000 * 124.35011 * 179.59421 * 15 13 12 44 44 H 1.08997 * 109.46991 * 90.00010 * 19 18 16 45 45 H 1.09000 * 109.46629 * 209.99956 * 19 18 16 46 46 H 1.08998 * 109.46708 * 329.99746 * 19 18 16 47 47 H 1.08999 * 109.47203 * 210.00171 * 20 18 16 48 48 H 1.08999 * 109.47249 * 330.00281 * 20 18 16 49 49 H 0.97001 * 120.00124 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6843 -1.1857 5 6 2.2172 0.0642 -2.2811 6 8 1.9974 1.2519 -2.2505 7 6 2.7183 -0.5769 -3.5495 8 6 2.8636 0.4895 -4.6371 9 6 3.3730 -0.1614 -5.9247 10 6 4.7253 -0.8332 -5.6784 11 6 3.4970 0.8952 -7.0448 12 6 3.0949 0.0783 -8.2947 13 6 2.2291 -1.0350 -7.7475 14 8 1.4885 -1.7293 -8.4112 15 7 2.4004 -1.1433 -6.4186 16 6 2.0324 -0.7105 1.2304 17 8 2.7296 -1.6965 1.1190 18 7 1.7068 -0.2501 2.4545 19 6 0.8640 0.9407 2.5890 20 6 2.1947 -0.9411 3.6506 21 6 3.5224 -0.3582 4.0610 22 1 3.9589 0.4467 3.4885 23 6 4.1794 -0.8518 5.1682 24 7 5.3378 -0.3428 5.5267 25 14 3.4240 -2.2436 6.1590 26 1 3.8840 -3.5460 5.6135 27 1 3.8439 -2.1254 7.5785 28 1 1.9435 -2.1659 6.0727 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.0088 -1.3366 -3.8776 33 1 3.6872 -1.0406 -3.3641 34 1 3.5733 1.2488 -4.3088 35 1 1.8949 0.9534 -4.8227 36 1 5.4556 -0.0811 -5.3796 37 1 5.0603 -1.3216 -6.5934 38 1 4.6235 -1.5755 -4.8866 39 1 2.8056 1.7216 -6.8799 40 1 4.5217 1.2572 -7.1278 41 1 2.5266 0.6977 -8.9886 42 1 3.9791 -0.3292 -8.7847 43 1 1.9405 -1.7877 -5.8581 44 1 -0.1838 0.6423 2.6225 45 1 1.1218 1.4661 3.5085 46 1 1.0272 1.5994 1.7360 47 1 1.4766 -0.8156 4.4610 48 1 2.3155 -2.0024 3.4333 49 1 5.8002 -0.6904 6.3053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751508301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = -181.488243 kcal Electronic energy + Delta-G solvation = -29902.279210 eV Core-core repulsion = 25635.613936 eV Total energy + Delta-G solvation = -4266.665274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06576 -41.54814 -40.59396 -38.46630 -37.65102 -36.78895 -34.89684 -34.30996 -33.10795 -32.29399 -30.50079 -30.04033 -27.82261 -27.24538 -25.88385 -24.88786 -23.69967 -21.97946 -21.75235 -20.77774 -20.45432 -19.21771 -19.09153 -18.13508 -17.95170 -17.59342 -17.30283 -16.97078 -16.68255 -16.56636 -16.00150 -15.71556 -15.24651 -15.13561 -14.98459 -14.71083 -14.60229 -14.43451 -14.14022 -13.86234 -13.75294 -13.64499 -13.54023 -13.45725 -13.27017 -13.11490 -13.03288 -12.81719 -12.60655 -12.57268 -12.37284 -12.08385 -12.03114 -11.92799 -11.82989 -11.76253 -11.61738 -11.58143 -10.94002 -10.84608 -10.69289 -10.16914 -9.51924 -8.35388 -6.41479 1.06162 1.28590 1.34726 1.37650 1.45969 1.55549 1.58237 2.30163 2.32284 2.38287 2.98858 3.31073 3.35059 3.40534 3.60096 3.72774 3.78234 3.83409 3.95248 4.07520 4.15247 4.26726 4.29744 4.41688 4.52715 4.55487 4.59978 4.64376 4.75076 4.76903 4.85869 4.89734 4.90094 4.91066 4.95926 5.08501 5.10393 5.14429 5.17716 5.32373 5.41890 5.42630 5.50742 5.87883 6.04634 6.19274 6.46541 6.59900 6.62472 7.12971 7.24458 7.26447 8.81433 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002042 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.357868 B =13711.766442 C =14110.405224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.111 0.889 4 O -0.347 6.347 5 C 0.458 3.542 6 O -0.528 6.528 7 C -0.114 4.114 8 C -0.102 4.102 9 C 0.160 3.840 10 C -0.165 4.165 11 C -0.117 4.117 12 C -0.150 4.150 13 C 0.510 3.490 14 O -0.594 6.594 15 N -0.717 5.717 16 C 0.500 3.500 17 O -0.576 6.576 18 N -0.597 5.597 19 C 0.066 3.934 20 C 0.224 3.776 21 C -0.540 4.540 22 H 0.027 0.973 23 C 0.010 3.990 24 N -0.944 5.944 25 Si 0.949 3.051 26 H -0.277 1.277 27 H -0.275 1.275 28 H -0.234 1.234 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.409 0.591 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.022 0.978 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 4.780 -23.565 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.128 0.872 4 O -0.263 6.263 5 C 0.303 3.697 6 O -0.417 6.417 7 C -0.152 4.152 8 C -0.141 4.141 9 C 0.074 3.926 10 C -0.223 4.223 11 C -0.154 4.154 12 C -0.190 4.190 13 C 0.298 3.702 14 O -0.475 6.475 15 N -0.372 5.372 16 C 0.287 3.713 17 O -0.456 6.456 18 N -0.329 5.329 19 C -0.075 4.075 20 C 0.102 3.898 21 C -0.578 4.578 22 H 0.045 0.955 23 C -0.188 4.188 24 N -0.584 5.584 25 Si 0.772 3.228 26 H -0.203 1.203 27 H -0.201 1.201 28 H -0.157 1.157 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.248 0.752 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.040 0.960 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.267 4.368 -23.833 25.601 hybrid contribution 0.167 -0.811 1.202 1.459 sum -8.100 3.557 -22.631 24.299 Atomic orbital electron populations 1.22405 0.89099 1.04623 1.06150 1.22482 0.97925 0.96525 0.81092 0.87167 1.86618 1.76949 1.42555 1.20151 1.24539 0.73490 0.85879 0.85806 1.90638 1.49110 1.17346 1.84595 1.21664 1.05111 1.00655 0.87737 1.21745 1.03812 0.96966 0.91542 1.21162 0.88867 0.88639 0.93927 1.22330 0.95134 1.01968 1.02908 1.22777 1.05570 0.96455 0.90623 1.22395 1.00991 0.95856 0.99777 1.21550 0.81175 0.84612 0.82841 1.90735 1.42231 1.50661 1.63885 1.46582 1.44253 1.37607 1.08721 1.20692 0.80456 0.84859 0.85244 1.90662 1.39285 1.28745 1.86878 1.47810 1.50261 1.29708 1.05105 1.22288 0.94897 0.86196 1.04153 1.19436 0.93930 0.92864 0.83597 1.21535 1.05174 1.19398 1.11729 0.95452 1.25882 0.95047 0.99455 0.98414 1.70050 1.16608 1.44246 1.27512 0.85695 0.80883 0.78592 0.77661 1.20251 1.20055 1.15673 0.86922 0.89614 0.91079 0.86272 0.85758 0.88640 0.90429 0.89287 0.91515 0.91791 0.88975 0.86387 0.87320 0.86233 0.75206 0.88741 0.90687 0.89732 0.92196 0.96022 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.18 71.98 0.66 -2.87 16 2 C 0.08 2.37 2.18 29.85 0.07 2.44 16 3 H 0.11 3.27 6.42 -2.39 -0.02 3.25 16 4 O -0.35 -10.58 9.41 -44.98 -0.42 -11.00 16 5 C 0.46 11.05 7.93 71.23 0.56 11.62 16 6 O -0.53 -14.30 15.20 21.95 0.33 -13.97 16 7 C -0.11 -1.65 5.32 29.85 0.16 -1.49 16 8 C -0.10 -1.12 3.71 30.60 0.11 -1.00 16 9 C 0.16 1.31 0.87 4.06 0.00 1.31 16 10 C -0.17 -1.18 8.47 71.98 0.61 -0.57 16 11 C -0.12 -0.59 6.21 31.65 0.20 -0.40 16 12 C -0.15 -1.27 6.86 30.59 0.21 -1.06 16 13 C 0.51 8.78 8.43 87.90 0.74 9.52 16 14 O -0.59 -16.47 18.03 -3.03 -0.05 -16.53 16 15 N -0.72 -8.86 5.39 -419.97 -2.26 -11.13 16 16 C 0.50 20.54 7.15 87.66 0.63 21.17 16 17 O -0.58 -29.52 16.08 15.76 0.25 -29.26 16 18 N -0.60 -23.53 2.86 -851.14 -2.43 -25.96 16 19 C 0.07 1.76 8.80 127.77 1.12 2.88 16 20 C 0.22 10.59 4.23 85.63 0.36 10.95 16 21 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 22 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 23 C 0.01 0.60 5.47 84.65 0.46 1.06 16 24 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 25 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.23 -9.44 6.54 99.48 0.65 -8.79 16 29 H 0.11 1.91 4.53 -2.39 -0.01 1.90 16 30 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.32 6.90 -2.39 -0.02 1.30 16 33 H 0.12 1.59 6.43 -2.39 -0.02 1.58 16 34 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.53 6.39 -2.38 -0.02 0.52 16 39 H 0.09 0.43 7.91 -2.39 -0.02 0.41 16 40 H 0.12 0.12 7.89 -2.39 -0.02 0.10 16 41 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.41 4.85 7.70 -92.71 -0.71 4.13 16 44 H 0.09 1.77 6.95 -2.39 -0.02 1.75 16 45 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 46 H 0.08 1.87 6.01 -2.39 -0.01 1.86 16 47 H 0.06 2.53 7.13 -2.39 -0.02 2.52 16 48 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 49 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -88.69 394.49 3.96 -84.73 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.21 Total: 14.16 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.16 Total: 22.45 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.40 Total: -95.98 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: 0.11 Total: -70.77 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -88.69 3.96 -84.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751508301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.759 kcal (2) G-P(sol) polarization free energy of solvation -88.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds