Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47159 * 2 1 4 4 O 1.21283 * 120.00262 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99928 * 179.72352 * 3 2 1 6 6 C 1.47021 * 125.64880 * 359.97385 * 5 3 2 7 7 C 1.54333 * 107.26894 * 178.84609 * 6 5 3 8 8 C 1.55161 * 103.02098 * 338.14001 * 7 6 5 9 9 H 1.08998 * 111.00211 * 277.23708 * 8 7 6 10 10 C 1.50694 * 111.04163 * 153.39096 * 8 7 6 11 11 O 1.20829 * 120.00456 * 247.78742 * 10 8 7 12 12 O 1.34230 * 119.99716 * 67.78600 * 10 8 7 13 13 C 1.45199 * 116.99959 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.47241 * 329.99660 * 13 12 10 15 15 C 1.53003 * 109.46967 * 90.00260 * 13 12 10 16 16 C 1.50704 * 109.46932 * 209.99758 * 13 12 10 17 17 O 1.21282 * 120.00121 * 0.02562 * 16 13 12 18 18 N 1.34782 * 119.99891 * 179.97438 * 16 13 12 19 19 C 1.46500 * 119.99806 * 0.02562 * 18 16 13 20 20 C 1.46496 * 120.00094 * 179.97438 * 18 16 13 21 21 C 1.50705 * 109.46739 * 90.00539 * 20 18 16 22 22 H 1.07999 * 119.99814 * 359.97438 * 21 20 18 23 23 C 1.37879 * 119.99757 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99776 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00015 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47104 * 90.00255 * 25 23 21 27 27 H 1.48497 * 109.46922 * 210.00208 * 25 23 21 28 28 H 1.48496 * 109.47180 * 330.00153 * 25 23 21 29 29 C 1.47428 * 125.65051 * 180.27344 * 5 3 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 1 2 3 31 31 H 1.09000 * 109.47234 * 59.99288 * 1 2 3 32 32 H 1.08994 * 109.47089 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 240.00203 * 2 1 3 34 34 H 1.08994 * 109.47405 * 120.00033 * 2 1 3 35 35 H 1.08999 * 109.88043 * 298.38854 * 6 5 3 36 36 H 1.09000 * 109.88498 * 59.55272 * 6 5 3 37 37 H 1.08995 * 110.85292 * 219.67349 * 7 6 5 38 38 H 1.09000 * 110.67092 * 96.51481 * 7 6 5 39 39 H 1.09005 * 109.46786 * 180.02562 * 15 13 12 40 40 H 1.08998 * 109.47009 * 299.99716 * 15 13 12 41 41 H 1.08995 * 109.47220 * 60.00296 * 15 13 12 42 42 H 1.08997 * 109.47350 * 89.99784 * 19 18 16 43 43 H 1.08997 * 109.46707 * 209.99625 * 19 18 16 44 44 H 1.09003 * 109.47415 * 329.99150 * 19 18 16 45 45 H 1.08996 * 109.47293 * 210.00258 * 20 18 16 46 46 H 1.09001 * 109.47226 * 330.01077 * 20 18 16 47 47 H 0.97006 * 119.99938 * 179.97438 * 24 23 21 48 48 H 1.09000 * 110.36749 * 322.93503 * 29 5 3 49 49 H 1.09002 * 110.36027 * 85.14728 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0056 6 6 4.4181 0.6491 0.0126 7 6 5.7690 1.3948 -0.0123 8 6 5.3916 2.7825 -0.5948 9 1 5.3471 2.7503 -1.6834 10 6 6.3526 3.8451 -0.1274 11 8 5.9751 4.7130 0.6237 12 8 7.6280 3.8273 -0.5455 13 6 8.4974 4.8814 -0.0544 14 1 7.9097 5.7805 0.1305 15 6 9.1617 4.4293 1.2477 16 6 9.5583 5.1774 -1.0830 17 8 9.5792 4.5611 -2.1273 18 7 10.4832 6.1279 -0.8428 19 6 10.4576 6.8728 0.4184 20 6 11.5148 6.4154 -1.8425 21 6 11.0217 7.4882 -2.7790 22 1 10.0381 7.9130 -2.6433 23 6 11.8259 7.9266 -3.8096 24 7 11.3954 8.8624 -4.6271 25 14 13.5269 7.1912 -4.0446 26 1 13.4373 6.0146 -4.9462 27 1 14.4270 8.2080 -4.6456 28 1 14.0687 6.7665 -2.7289 29 6 3.9833 3.0019 0.0120 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.3439 0.0427 0.9153 36 1 4.3300 0.0158 -0.8701 37 1 6.4816 0.8853 -0.6609 38 1 6.1712 1.4963 0.9957 39 1 9.8140 5.2209 1.6166 40 1 8.3944 4.2152 1.9916 41 1 9.7495 3.5303 1.0627 42 1 11.0641 6.3528 1.1599 43 1 10.8591 7.8733 0.2576 44 1 9.4306 6.9466 0.7760 45 1 12.4203 6.7582 -1.3419 46 1 11.7334 5.5105 -2.4096 47 1 11.9613 9.1711 -5.3520 48 1 3.4083 3.6934 -0.6038 49 1 4.0623 3.3788 1.0318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773223206.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = -144.400178 kcal Electronic energy + Delta-G solvation = -29926.217596 eV Core-core repulsion = 25661.160582 eV Total energy + Delta-G solvation = -4265.057015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15554 -40.23150 -39.16644 -37.76145 -36.46057 -35.12199 -33.36000 -32.93876 -32.29067 -31.53049 -29.67527 -28.32652 -26.50413 -26.09303 -24.52564 -23.42683 -22.97291 -21.96119 -20.39089 -19.59349 -18.97094 -18.27286 -17.66294 -17.01767 -16.95738 -16.53579 -16.18060 -15.81535 -15.64324 -15.33174 -14.85960 -14.76395 -14.33064 -13.99170 -13.81377 -13.58091 -13.53955 -13.26436 -13.15779 -12.76469 -12.65340 -12.49974 -12.45122 -12.38765 -12.23890 -12.05797 -11.87905 -11.76034 -11.64608 -11.58560 -11.35912 -11.34236 -11.01557 -10.79433 -10.60396 -10.56488 -10.20237 -10.19733 -9.59755 -9.09311 -9.07251 -8.63531 -7.85147 -6.12865 -4.12711 1.97829 2.13362 2.29620 2.68685 3.11548 3.25803 3.31619 3.33362 3.68083 3.79290 3.99057 4.27926 4.35194 4.39419 4.60314 4.64394 4.68067 4.70831 4.73788 4.81081 4.88325 4.99491 5.01157 5.14780 5.19976 5.29295 5.38042 5.39160 5.43790 5.49606 5.53259 5.54690 5.55797 5.59676 5.70762 5.77693 5.87413 5.88043 6.11713 6.29312 6.59313 6.84292 7.06932 7.17835 7.53646 7.56591 7.79479 8.04827 8.40245 8.76026 8.90426 9.46164 11.00353 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.002048 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.344449 B =13671.446059 C =14008.671295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.527 3.473 4 O -0.536 6.536 5 N -0.623 5.623 6 C 0.101 3.899 7 C -0.119 4.119 8 C -0.098 4.098 9 H 0.127 0.873 10 C 0.475 3.525 11 O -0.504 6.504 12 O -0.321 6.321 13 C 0.070 3.930 14 H 0.109 0.891 15 C -0.175 4.175 16 C 0.511 3.489 17 O -0.519 6.519 18 N -0.591 5.591 19 C 0.075 3.925 20 C 0.217 3.783 21 C -0.533 4.533 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.895 5.895 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.266 1.266 29 C 0.122 3.878 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.265 0.735 48 H 0.089 0.911 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 -19.643 14.826 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.317 3.683 4 O -0.412 6.412 5 N -0.359 5.359 6 C -0.022 4.022 7 C -0.157 4.157 8 C -0.118 4.118 9 H 0.145 0.855 10 C 0.317 3.683 11 O -0.391 6.391 12 O -0.236 6.236 13 C 0.012 3.988 14 H 0.126 0.874 15 C -0.232 4.232 16 C 0.296 3.704 17 O -0.394 6.394 18 N -0.324 5.324 19 C -0.069 4.069 20 C 0.097 3.903 21 C -0.572 4.572 22 H 0.093 0.907 23 C -0.130 4.130 24 N -0.533 5.533 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.190 1.190 29 C 0.000 4.000 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.302 -19.105 14.322 27.332 hybrid contribution 1.036 0.006 -0.203 1.056 sum -12.266 -19.099 14.119 26.731 Atomic orbital electron populations 1.21550 0.92848 1.01702 1.03502 1.21620 0.98646 0.93223 1.04361 1.20529 0.80010 0.92125 0.75682 1.90737 1.54183 1.46774 1.49523 1.48531 1.05392 1.07767 1.74204 1.22107 0.86131 0.91384 1.02585 1.22654 0.96999 0.92997 1.03019 1.22120 0.92551 0.93338 1.03780 0.85510 1.23128 0.82131 0.85124 0.77937 1.90680 1.77862 1.36748 1.33855 1.86593 1.20417 1.49751 1.66812 1.22608 0.90889 0.91140 0.94154 0.87356 1.22406 1.01927 1.03984 0.94915 1.19770 0.82399 0.81083 0.87169 1.90707 1.72626 1.50010 1.26039 1.47722 1.30350 1.35478 1.18855 1.21922 1.01358 0.97923 0.85659 1.19725 0.85821 0.97423 0.87298 1.21314 1.03977 1.19800 1.12063 0.90722 1.24865 0.98297 0.94639 0.95199 1.69897 1.37361 1.28963 1.17097 0.86836 0.84313 0.79368 0.79077 1.19850 1.21002 1.19037 1.22047 0.90174 0.85211 1.02618 0.91933 0.91875 0.91932 0.88802 0.88899 0.90549 0.90436 0.87921 0.89708 0.88806 0.91276 0.90975 0.92881 0.90040 0.91936 0.94803 0.94354 0.92475 0.89237 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.16 0.34 -0.55 16 2 C -0.14 -0.81 5.61 -27.88 -0.16 -0.97 16 3 C 0.53 5.24 7.85 -10.98 -0.09 5.15 16 4 O -0.54 -7.64 16.24 5.55 0.09 -7.55 16 5 N -0.62 -5.41 3.33 -170.51 -0.57 -5.97 16 6 C 0.10 0.53 6.49 -3.06 -0.02 0.51 16 7 C -0.12 -0.75 6.41 -24.89 -0.16 -0.91 16 8 C -0.10 -0.93 3.55 -89.62 -0.32 -1.25 16 9 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 10 C 0.47 6.23 7.25 36.00 0.26 6.49 16 11 O -0.50 -7.57 14.94 -18.75 -0.28 -7.85 16 12 O -0.32 -4.90 9.41 -45.90 -0.43 -5.33 16 13 C 0.07 1.10 2.18 -27.88 -0.06 1.03 16 14 H 0.11 1.67 6.41 -51.93 -0.33 1.34 16 15 C -0.18 -2.01 9.18 37.16 0.34 -1.67 16 16 C 0.51 10.38 7.15 -10.98 -0.08 10.30 16 17 O -0.52 -12.80 16.08 -14.10 -0.23 -13.02 16 18 N -0.59 -11.80 2.86 -182.95 -0.52 -12.32 16 19 C 0.07 1.08 8.80 59.85 0.53 1.61 16 20 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 21 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 22 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 24 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 25 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 29 C 0.12 1.25 6.02 -2.53 -0.02 1.24 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 39 H 0.09 0.95 4.53 -51.93 -0.24 0.71 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 43 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 45 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 46 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 49 H 0.09 0.96 7.41 -51.93 -0.38 0.57 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -38.08 399.65 -7.54 -45.62 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.84 Total: -2.12 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 0.11 Total: 12.65 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.32 Total: -44.96 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.85 Total: -33.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.08 -7.54 -45.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773223206.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.782 kcal (2) G-P(sol) polarization free energy of solvation -38.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds