Wall clock time and date at job start Sat Apr 11 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.46498 * 120.00070 * 269.99748 * 3 2 1 5 5 C 1.50699 * 109.47280 * 269.99917 * 4 3 2 6 6 H 1.08002 * 119.99842 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00043 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00270 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00027 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47729 * 89.99459 * 9 7 5 11 11 H 1.48502 * 109.47358 * 210.00247 * 9 7 5 12 12 H 1.48507 * 109.46676 * 329.99714 * 9 7 5 13 13 C 1.34775 * 119.99997 * 89.99698 * 3 2 1 14 14 O 1.21289 * 120.00098 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00274 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47138 * 179.97438 * 15 13 3 17 17 C 1.34538 * 116.99917 * 180.02562 * 16 15 13 18 18 O 1.21255 * 119.99621 * 0.02562 * 17 16 15 19 19 C 1.49431 * 120.00074 * 180.27993 * 17 16 15 20 20 O 1.21355 * 119.99821 * 352.80197 * 19 17 16 21 21 N 1.34778 * 120.00311 * 172.80912 * 19 17 16 22 22 C 1.46928 * 120.62730 * 1.68306 * 21 19 17 23 23 C 1.52760 * 109.00972 * 233.58887 * 22 21 19 24 24 C 1.53038 * 109.38086 * 305.58965 * 23 22 21 25 25 C 1.53044 * 109.54182 * 61.24144 * 24 23 22 26 26 H 1.09003 * 109.49555 * 58.58201 * 25 24 23 27 27 C 1.52995 * 109.49774 * 178.68089 * 25 24 23 28 28 C 1.46924 * 120.63364 * 181.97090 * 21 19 17 29 29 H 1.08998 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47416 * 300.00299 * 1 2 3 31 31 H 1.09006 * 109.47165 * 60.00088 * 1 2 3 32 32 H 1.08994 * 109.46994 * 239.99896 * 2 1 3 33 33 H 1.09001 * 109.46746 * 119.99723 * 2 1 3 34 34 H 1.09001 * 109.46972 * 29.99970 * 4 3 2 35 35 H 1.09001 * 109.47304 * 149.99451 * 4 3 2 36 36 H 0.96995 * 120.00051 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.46691 * 60.00323 * 15 13 3 38 38 H 1.08996 * 109.46855 * 300.00006 * 15 13 3 39 39 H 1.09001 * 109.58400 * 353.42244 * 22 21 19 40 40 H 1.09002 * 109.58481 * 113.84510 * 22 21 19 41 41 H 1.08995 * 109.56227 * 185.55466 * 23 22 21 42 42 H 1.08996 * 109.35997 * 65.49921 * 23 22 21 43 43 H 1.08998 * 109.46267 * 301.21714 * 24 23 22 44 44 H 1.09007 * 109.45946 * 181.25925 * 24 23 22 45 45 H 1.09009 * 109.46661 * 179.83521 * 27 25 24 46 46 H 1.08994 * 109.47351 * 299.83481 * 27 25 24 47 47 H 1.08997 * 109.47404 * 59.83840 * 27 25 24 48 48 H 1.08997 * 109.58628 * 246.15211 * 28 21 19 49 49 H 1.09004 * 109.58700 * 6.43003 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3896 -2.8778 8 7 3.3489 3.1248 -3.6186 9 14 5.9132 2.0955 -3.4174 10 1 5.9762 0.8743 -4.2599 11 1 6.3925 3.2626 -4.2007 12 1 6.7735 1.9159 -2.2203 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9911 1.3064 2.4724 16 8 2.3063 2.1958 3.5760 17 6 2.1350 1.7109 4.8192 18 8 1.7343 0.5776 4.9780 19 6 2.4331 2.5710 6.0042 20 8 2.9519 3.6573 5.8504 21 7 2.1259 2.1404 7.2439 22 6 1.5315 0.8125 7.4492 23 6 0.2459 0.9629 8.2605 24 6 0.5476 1.7237 9.5537 25 6 1.0733 3.1205 9.2151 26 1 0.3315 3.6542 8.6209 27 6 1.3434 3.8918 10.5085 28 6 2.3733 2.9924 8.4151 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6748 3.5147 -4.4448 37 1 2.6210 0.4187 2.5303 38 1 0.9431 1.0127 2.5299 39 1 1.3019 0.3618 6.4836 40 1 2.2318 0.1789 7.9933 41 1 -0.1504 -0.0232 8.5025 42 1 -0.4880 1.5169 7.6753 43 1 1.2998 1.1817 10.1268 44 1 -0.3644 1.8122 10.1441 45 1 1.7206 4.8856 10.2668 46 1 0.4182 3.9828 11.0774 47 1 2.0841 3.3567 11.1027 48 1 3.1437 2.5401 9.0397 49 1 2.7016 3.9786 8.0868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805559182.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:42 Heat of formation + Delta-G solvation = -135.087767 kcal Electronic energy + Delta-G solvation = -30147.732647 eV Core-core repulsion = 25883.079449 eV Total energy + Delta-G solvation = -4264.653198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48924 -39.95372 -38.93781 -38.06506 -36.87329 -35.36178 -34.07456 -32.85449 -32.29422 -30.22666 -29.50790 -27.77775 -26.88399 -26.31131 -24.15791 -23.10710 -22.72393 -22.49217 -21.08908 -20.08007 -18.74415 -18.12698 -17.51304 -17.12245 -16.66124 -16.47218 -16.20638 -15.69629 -15.51746 -15.40641 -14.79708 -14.67853 -14.48373 -14.29108 -13.93921 -13.57001 -13.50888 -13.41450 -13.14401 -13.01671 -12.74148 -12.61807 -12.30216 -12.19480 -12.08170 -11.82607 -11.68214 -11.51879 -11.28113 -11.25992 -11.03468 -10.94810 -10.91214 -10.81532 -10.71214 -10.55998 -10.15531 -9.67947 -9.66332 -9.13269 -9.04749 -8.45206 -7.78725 -6.06315 -4.11244 0.87259 1.54403 2.72797 3.00087 3.19779 3.30066 3.37329 3.42230 3.69011 4.19403 4.28174 4.34682 4.43084 4.44392 4.61541 4.73877 4.87114 4.92200 4.99504 5.07874 5.10297 5.14746 5.26455 5.28062 5.29335 5.31206 5.37165 5.42892 5.53560 5.54515 5.65588 5.67143 5.67998 5.73276 5.92528 5.93959 5.96633 6.15295 6.25254 6.40578 6.70721 6.94785 7.11345 7.37881 7.45227 7.58132 7.89469 8.19017 8.25349 8.81802 8.96854 9.53846 11.01878 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002228 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.819320 B =12562.130936 C =13335.120540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.512 6.512 15 C 0.044 3.956 16 O -0.294 6.294 17 C 0.465 3.535 18 O -0.480 6.480 19 C 0.532 3.468 20 O -0.483 6.483 21 N -0.580 5.580 22 C 0.044 3.956 23 C -0.134 4.134 24 C -0.117 4.117 25 C -0.108 4.108 26 H 0.077 0.923 27 C -0.145 4.145 28 C 0.114 3.886 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.155 0.845 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -8.145 26.302 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.387 6.387 15 C -0.033 4.033 16 O -0.205 6.205 17 C 0.304 3.696 18 O -0.370 6.370 19 C 0.314 3.686 20 O -0.355 6.355 21 N -0.315 5.315 22 C -0.076 4.076 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.127 4.127 26 H 0.095 0.905 27 C -0.203 4.203 28 C -0.007 4.007 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.171 0.829 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.237 -7.131 25.984 28.175 hybrid contribution 0.839 -0.503 -0.318 1.028 sum -7.398 -7.634 25.666 27.780 Atomic orbital electron populations 1.22240 0.96503 1.01702 1.02459 1.21518 0.93764 0.83937 1.03073 1.48210 1.63860 1.13408 1.07030 1.19348 0.96525 0.93754 0.77427 1.21416 0.96838 1.32133 1.06361 0.92370 1.24936 0.97948 0.94834 0.96378 1.69927 1.35733 1.33323 1.14276 0.86477 0.84565 0.77671 0.78604 1.20639 1.21047 1.19855 1.19611 0.80065 0.87231 0.84149 1.90763 1.44060 1.17330 1.86544 1.23225 1.03125 0.92729 0.84229 1.86730 1.76473 1.44157 1.13135 1.23607 0.74552 0.85954 0.85445 1.90359 1.41954 1.20002 1.84670 1.18731 0.81197 0.85959 0.82744 1.90861 1.39933 1.20248 1.84477 1.47869 1.60690 1.18493 1.04497 1.23232 0.94595 0.82745 1.07038 1.21840 0.97629 1.01262 0.96482 1.21641 1.01322 0.95123 0.97414 1.21523 0.97284 0.96916 0.96976 0.90497 1.21762 1.02021 1.00184 0.96319 1.21873 0.97215 0.96323 0.85314 0.91861 0.93166 0.91725 0.89324 0.91776 0.94551 0.93647 0.92651 0.87999 0.88108 0.82931 0.91141 0.90296 0.91544 0.91627 0.91529 0.92159 0.92119 0.92363 0.90623 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.35 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.51 10.67 7.75 -10.98 -0.09 10.59 16 14 O -0.51 -13.49 16.08 -14.11 -0.23 -13.71 16 15 C 0.04 0.69 4.50 36.01 0.16 0.85 16 16 O -0.29 -5.09 9.63 -49.07 -0.47 -5.57 16 17 C 0.46 6.61 7.94 35.40 0.28 6.89 16 18 O -0.48 -6.11 12.81 -19.08 -0.24 -6.36 16 19 C 0.53 7.36 7.76 -11.59 -0.09 7.27 16 20 O -0.48 -8.27 16.39 -7.51 -0.12 -8.40 16 21 N -0.58 -5.97 2.98 -173.54 -0.52 -6.49 16 22 C 0.04 0.37 6.20 -3.93 -0.02 0.34 16 23 C -0.13 -0.86 6.07 -26.83 -0.16 -1.03 16 24 C -0.12 -0.66 5.17 -26.69 -0.14 -0.80 16 25 C -0.11 -0.70 2.87 -90.50 -0.26 -0.96 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 C -0.15 -0.74 9.20 37.16 0.34 -0.39 16 28 C 0.11 0.95 5.71 -3.71 -0.02 0.93 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.10 1.37 7.39 -51.93 -0.38 0.98 16 38 H 0.10 1.28 7.18 -51.93 -0.37 0.91 16 39 H 0.15 1.47 3.79 -56.97 -0.22 1.25 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.94 7.01 -51.93 -0.36 0.58 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -34.91 400.25 -8.24 -43.16 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.89 Total: -3.44 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -0.09 Total: 16.24 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.21 Total: -44.84 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.07 Total: -34.03 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.91 -8.24 -43.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805559182.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.931 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds