Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9 16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21279 * 120.00041 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99935 * 180.02562 * 18 17 2 21 21 C 1.50699 * 109.47042 * 180.02562 * 20 18 17 22 22 C 1.38255 * 120.00321 * 100.00195 * 21 20 18 23 23 C 1.38216 * 120.07483 * 180.02562 * 22 21 20 24 24 C 1.38252 * 120.06811 * 359.97438 * 23 22 21 25 25 C 1.38373 * 120.00047 * 359.97438 * 24 23 22 26 26 F 1.35102 * 120.03279 * 180.02562 * 25 24 23 27 27 C 1.38369 * 119.99819 * 279.72415 * 21 20 18 28 28 F 1.35093 * 120.03950 * 359.97438 * 27 21 20 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 36 36 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 37 37 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 38 38 H 1.09001 * 109.46908 * 300.00434 * 7 6 5 39 39 H 1.08996 * 109.46687 * 59.99974 * 7 6 5 40 40 H 0.96999 * 120.00405 * 0.02562 * 8 7 6 41 41 H 0.97006 * 119.99411 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 43 43 H 1.08999 * 109.47030 * 300.00189 * 20 18 17 44 44 H 1.08995 * 109.47091 * 59.99897 * 20 18 17 45 45 H 1.08004 * 119.96430 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.96521 * 179.97438 * 23 22 21 47 47 H 1.08005 * 119.99987 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 6 5.5998 -1.2267 -2.6272 8 7 6.0882 -1.9173 -3.8232 9 6 7.4303 -1.9546 -4.0924 10 1 8.1287 -1.4745 -3.4231 11 6 7.8930 -2.6086 -5.2260 12 7 7.0417 -3.1933 -6.0419 13 14 9.7238 -2.6588 -5.5934 14 1 10.4623 -1.9316 -4.5299 15 1 10.1813 -4.0709 -5.6374 16 1 9.9833 -2.0133 -6.9054 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1584 2.4117 20 6 2.6498 -0.7285 3.5875 21 6 2.6997 0.2397 4.7413 22 6 1.6866 0.2470 5.6820 23 6 1.7307 1.1347 6.7404 24 6 2.7883 2.0169 6.8611 25 6 3.8045 2.0113 5.9219 26 9 4.8386 2.8728 6.0394 27 6 3.7626 1.1173 4.8623 28 9 4.7561 1.1067 3.9470 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9995 -1.0728 -0.4258 36 1 3.7865 -2.3844 -2.5199 37 1 3.6403 -0.8743 -3.4507 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6868 -1.7396 40 1 5.4608 -2.3483 -4.4246 41 1 7.3651 -3.6500 -6.8343 42 1 2.2490 -1.6318 1.1527 43 1 1.9776 -1.5508 3.8325 44 1 3.6490 -1.1203 3.3980 45 1 0.8593 -0.4411 5.5892 46 1 0.9381 1.1393 7.4740 47 1 2.8218 2.7098 7.6889 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175470049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = -137.344663 kcal Electronic energy + Delta-G solvation = -28500.333526 eV Core-core repulsion = 24124.494945 eV Total energy + Delta-G solvation = -4375.838580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.53712 -49.63384 -41.10268 -39.72730 -38.02785 -36.82880 -34.78451 -34.03125 -32.90111 -31.64552 -31.28142 -28.85681 -28.66295 -25.95310 -24.10799 -23.83509 -23.38261 -22.07993 -21.82036 -21.42452 -19.15177 -18.95398 -18.38125 -18.20737 -17.97424 -17.32731 -17.09305 -16.70266 -16.32252 -16.10496 -16.04249 -15.73678 -15.50038 -15.44496 -15.29038 -14.97626 -14.66785 -14.36416 -14.32400 -14.10569 -13.93127 -13.33288 -13.11655 -13.07914 -12.97474 -12.90963 -12.86905 -12.68922 -12.46873 -12.28355 -12.22149 -12.12844 -11.90617 -11.81900 -11.51255 -11.40187 -10.97259 -10.96834 -10.05256 -9.90620 -9.74066 -9.03753 -7.98854 -5.28123 -0.05438 -0.03606 1.45112 1.46255 1.56681 1.64990 2.14534 2.52913 2.53362 2.81032 3.27991 3.34365 3.45290 3.59047 3.75875 3.89745 3.98177 4.03900 4.04908 4.14563 4.19139 4.32413 4.35757 4.42522 4.51101 4.59729 4.64080 4.77826 4.82699 4.86648 4.88536 4.92922 4.98542 4.99334 5.01449 5.13003 5.16593 5.26019 5.27296 5.33239 5.43533 5.44252 5.51299 5.61155 5.77959 6.24432 6.58880 7.28829 7.30005 8.06184 8.30187 9.24876 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.001971 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.691616 B =14200.851109 C =15907.415442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.059 0.941 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.111 4.111 7 C 0.147 3.853 8 N -0.748 5.748 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.291 1.291 17 N -0.712 5.712 18 C 0.513 3.487 19 O -0.581 6.581 20 C -0.103 4.103 21 C -0.084 4.084 22 C -0.086 4.086 23 C -0.090 4.090 24 C -0.126 4.126 25 C 0.034 3.966 26 F -0.147 7.147 27 C 0.046 3.954 28 F -0.148 7.148 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.010 0.990 39 H 0.018 0.982 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.416 0.584 43 H 0.156 0.844 44 H 0.115 0.885 45 H 0.175 0.825 46 H 0.181 0.819 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.871 4.352 29.631 35.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.149 4.149 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.805 3.195 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.218 1.218 17 N -0.364 5.364 18 C 0.300 3.700 19 O -0.461 6.461 20 C -0.142 4.142 21 C -0.085 4.085 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.144 4.144 25 C 0.014 3.986 26 F -0.126 7.126 27 C 0.026 3.974 28 F -0.126 7.126 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.207 0.793 41 H 0.062 0.938 42 H 0.253 0.747 43 H 0.174 0.826 44 H 0.133 0.867 45 H 0.192 0.808 46 H 0.198 0.802 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.811 5.266 29.664 36.057 hybrid contribution 1.857 -0.073 -1.169 2.196 sum -17.954 5.194 28.494 34.077 Atomic orbital electron populations 1.22088 0.94046 1.03020 1.02110 1.20928 0.94656 0.96395 0.84158 0.92238 1.21838 0.94402 1.02189 0.96907 1.21433 0.96115 0.99853 0.96996 1.21596 0.93568 1.01075 0.98670 1.20859 0.94420 0.94120 0.88509 1.42622 1.04526 1.65367 1.26601 1.19680 0.85323 1.27743 1.05446 0.91027 1.25619 1.02339 1.01185 0.97769 1.69821 1.34603 1.41938 1.15525 0.85036 0.79768 0.77162 0.77563 1.19300 1.21565 1.21806 1.46021 1.66698 1.14784 1.08924 1.20871 0.76879 0.86896 0.85354 1.90715 1.51759 1.17883 1.85713 1.20746 1.06243 0.98207 0.88980 1.19556 0.93634 0.96985 0.98332 1.21493 0.97111 0.99349 0.92410 1.21556 0.97694 0.92969 0.98499 1.21480 0.92718 1.01621 0.98594 1.18145 0.89220 0.92680 0.98530 1.91478 1.57063 1.68154 1.95928 1.18015 0.89478 1.00575 0.89292 1.91468 1.59959 1.95859 1.65361 0.93679 0.90958 0.90713 0.89323 0.89763 0.93221 0.91539 0.91537 0.92457 0.97246 0.96444 0.79333 0.93846 0.74722 0.82617 0.86702 0.80787 0.80173 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.48 71.98 0.68 -1.63 16 2 C 0.14 2.56 2.57 44.99 0.12 2.67 16 3 H 0.06 1.43 7.58 -2.39 -0.02 1.42 16 4 C -0.12 -1.99 4.75 30.60 0.15 -1.84 16 5 C -0.11 -2.51 5.10 30.60 0.16 -2.35 16 6 C -0.11 -3.45 5.33 30.60 0.16 -3.29 16 7 C 0.15 6.15 6.26 86.38 0.54 6.69 16 8 N -0.75 -39.78 5.60 -343.47 -1.92 -41.70 16 9 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 10 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 11 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 12 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 13 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 17 N -0.71 -10.90 4.53 -442.53 -2.00 -12.90 16 18 C 0.51 9.93 7.78 87.66 0.68 10.61 16 19 O -0.58 -16.81 15.62 -3.03 -0.05 -16.85 16 20 C -0.10 -1.25 5.56 29.10 0.16 -1.09 16 21 C -0.08 -1.35 4.42 -19.83 -0.09 -1.44 16 22 C -0.09 -0.81 9.67 22.27 0.22 -0.59 16 23 C -0.09 -0.70 10.04 22.27 0.22 -0.48 16 24 C -0.13 -1.61 10.02 22.31 0.22 -1.39 16 25 C 0.03 0.73 7.31 22.41 0.16 0.90 16 26 F -0.15 -3.74 17.18 44.97 0.77 -2.96 16 27 C 0.05 1.08 7.14 22.41 0.16 1.24 16 28 F -0.15 -4.25 16.57 44.97 0.75 -3.50 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.50 7.75 -2.39 -0.02 1.48 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.37 20.80 7.67 -92.71 -0.71 20.08 16 41 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 42 H 0.42 3.97 8.60 -92.71 -0.80 3.17 16 43 H 0.16 0.48 8.00 -2.39 -0.02 0.46 16 44 H 0.11 1.34 7.94 -2.39 -0.02 1.32 16 45 H 0.17 0.36 8.04 -2.91 -0.02 0.34 16 46 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 47 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -81.33 403.63 4.18 -77.15 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.52 Total: 21.34 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.85 Total: -9.82 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -3.65 Total: -114.56 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.05 Total: -16.85 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 1.52 Total: -6.47 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -81.33 4.18 -77.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175470049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.197 kcal (2) G-P(sol) polarization free energy of solvation -81.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds