Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 O 1.42899 * 109.47007 * 120.00436 * 2 1 3 5 5 C 1.53000 * 109.47038 * 240.00056 * 2 1 3 6 6 C 1.52999 * 109.47458 * 173.62612 * 5 2 1 7 7 H 1.09000 * 109.67623 * 298.93305 * 6 5 2 8 8 C 1.53292 * 109.67994 * 59.44700 * 6 5 2 9 9 O 1.42966 * 109.22171 * 172.03028 * 8 6 5 10 10 C 1.42964 * 114.16440 * 297.42062 * 9 8 6 11 11 C 1.53296 * 109.22157 * 62.58137 * 10 9 8 12 12 N 1.47144 * 109.68388 * 178.37771 * 6 5 2 13 13 C 1.34774 * 120.98549 * 9.72036 * 12 6 5 14 14 O 1.21353 * 119.99887 * 2.64443 * 13 12 6 15 15 C 1.49451 * 120.00334 * 182.64625 * 13 12 6 16 16 O 1.21343 * 120.00011 * 354.01846 * 15 13 12 17 17 N 1.34777 * 120.00006 * 174.01848 * 15 13 12 18 18 C 1.46507 * 119.99921 * 185.01041 * 17 15 13 19 19 C 1.52994 * 109.46816 * 184.99318 * 18 17 15 20 20 C 1.50701 * 115.55089 * 279.38585 * 19 18 17 21 21 H 1.07998 * 120.00049 * 95.10396 * 20 19 18 22 22 C 1.37881 * 119.99931 * 275.10022 * 20 19 18 23 23 N 1.31510 * 119.99806 * 5.07022 * 22 20 19 24 24 Si 1.86805 * 119.99895 * 185.06229 * 22 20 19 25 25 H 1.48499 * 109.46808 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46878 * 120.00391 * 24 22 20 27 27 H 1.48497 * 109.46994 * 240.00499 * 24 22 20 28 28 C 1.53001 * 117.49659 * 133.68223 * 19 18 17 29 29 C 1.52997 * 117.50139 * 65.05860 * 19 18 17 30 30 H 1.08999 * 109.47020 * 300.00139 * 1 2 3 31 31 H 1.09004 * 109.47061 * 59.99760 * 1 2 3 32 32 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 33 33 H 0.96698 * 113.99859 * 299.99670 * 4 2 1 34 34 H 1.09003 * 109.47402 * 293.62493 * 5 2 1 35 35 H 1.09008 * 109.47331 * 53.62549 * 5 2 1 36 36 H 1.08997 * 109.51621 * 291.95367 * 8 6 5 37 37 H 1.08999 * 109.51147 * 52.05691 * 8 6 5 38 38 H 1.09001 * 109.51206 * 182.50471 * 10 9 8 39 39 H 1.08997 * 109.51430 * 302.60697 * 10 9 8 40 40 H 1.08996 * 109.68064 * 67.42338 * 11 10 9 41 41 H 1.09010 * 109.68083 * 187.97367 * 11 10 9 42 42 H 0.96993 * 120.00076 * 5.02121 * 17 15 13 43 43 H 1.08992 * 109.47215 * 304.99808 * 18 17 15 44 44 H 1.08999 * 109.46736 * 64.99526 * 18 17 15 45 45 H 0.97005 * 119.99642 * 184.99732 * 23 22 20 46 46 H 1.09003 * 117.49713 * 359.97438 * 28 19 18 47 47 H 1.09006 * 117.50083 * 145.01590 * 28 19 18 48 48 H 1.08995 * 117.50412 * 214.97424 * 29 19 18 49 49 H 1.09004 * 117.49739 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5616 -0.5841 -1.3320 7 1 3.8316 0.4693 -1.4064 8 6 4.2037 -1.1945 -0.0810 9 8 5.6229 -1.2301 -0.2501 10 6 6.0626 -2.0506 -1.3351 11 6 5.5156 -1.4840 -2.6503 12 7 4.0612 -1.3091 -2.5110 13 6 3.2118 -1.7988 -3.4357 14 8 2.0190 -1.6032 -3.3280 15 6 3.7389 -2.5826 -4.5939 16 8 4.9362 -2.6865 -4.7616 17 7 2.8844 -3.1742 -5.4520 18 6 3.3981 -4.0325 -6.5224 19 6 2.2416 -4.4739 -7.4215 20 6 1.4186 -5.6252 -6.9036 21 1 0.5097 -5.4344 -6.3523 22 6 1.8259 -6.9222 -7.1338 23 7 2.9813 -7.1549 -7.7171 24 14 0.7364 -8.3490 -6.6168 25 1 -0.5014 -7.8235 -5.9869 26 1 0.3794 -9.1569 -7.8105 27 1 1.4651 -9.2005 -5.6427 28 6 2.4456 -4.3751 -8.9346 29 6 1.5159 -3.3907 -8.2221 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7210 -0.2702 1.9979 34 1 1.7728 -1.7766 -1.1941 35 1 1.5865 -0.2775 -2.1356 36 1 3.9559 -0.5866 0.7890 37 1 3.8280 -2.2074 0.0636 38 1 7.1521 -2.0585 -1.3673 39 1 5.6951 -3.0672 -1.1951 40 1 5.9830 -0.5214 -2.8578 41 1 5.7256 -2.1777 -3.4645 42 1 1.9293 -3.0315 -5.3610 43 1 4.1272 -3.4788 -7.1138 44 1 3.8751 -4.9104 -6.0867 45 1 3.2356 -8.0629 -7.9446 46 1 3.4037 -3.9952 -9.2895 47 1 1.9847 -5.1431 -9.5559 48 1 0.4434 -3.5109 -8.3747 49 1 1.8623 -2.3635 -8.1080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256791921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = -108.345079 kcal Electronic energy + Delta-G solvation = -31223.154169 eV Core-core repulsion = 26959.660621 eV Total energy + Delta-G solvation = -4263.493548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09583 -39.22831 -38.06381 -37.75198 -36.88033 -35.02979 -33.51860 -33.00555 -32.01713 -30.96211 -28.69958 -27.03731 -26.25754 -25.51184 -24.12018 -23.17829 -21.46107 -21.26920 -21.01542 -19.83477 -19.18003 -17.79487 -17.51090 -16.89534 -16.29617 -16.18719 -15.92097 -15.68060 -15.27928 -15.00034 -14.86213 -14.73777 -14.52382 -14.35942 -13.94053 -13.88060 -13.30940 -13.15616 -12.89471 -12.72890 -12.66092 -12.54650 -12.05352 -11.91682 -11.76905 -11.64671 -11.27143 -11.09836 -11.05092 -10.95443 -10.74588 -10.55525 -10.41315 -10.32449 -10.23639 -10.06124 -9.70722 -9.07812 -8.75119 -8.61162 -8.55017 -8.45780 -8.26410 -6.14483 -4.22834 1.64522 2.43236 3.23036 3.32519 3.35785 3.44826 3.64403 3.75042 4.10766 4.32785 4.52841 4.61176 4.71548 4.81638 4.92189 4.98616 5.06841 5.12832 5.14672 5.19878 5.25137 5.37338 5.49340 5.58754 5.64981 5.73639 5.84326 5.89162 5.92751 5.96713 6.04851 6.12320 6.24841 6.31478 6.42019 6.47509 6.60812 6.69053 6.98743 7.00700 7.08101 7.11348 7.31626 7.38470 7.38784 7.66660 7.77099 8.03555 8.26911 8.40078 8.80108 9.45281 10.93928 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.003026 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.277921 B = 9251.721378 C = 9857.927709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.054 0.946 4 O -0.565 6.565 5 C -0.110 4.110 6 C 0.112 3.888 7 H 0.079 0.921 8 C 0.057 3.943 9 O -0.389 6.389 10 C 0.047 3.953 11 C 0.018 3.982 12 N -0.584 5.584 13 C 0.511 3.489 14 O -0.517 6.517 15 C 0.497 3.503 16 O -0.528 6.528 17 N -0.665 5.665 18 C 0.157 3.843 19 C 0.024 3.976 20 C -0.500 4.500 21 H 0.062 0.938 22 C 0.073 3.927 23 N -0.875 5.875 24 Si 0.889 3.111 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.284 1.284 28 C -0.144 4.144 29 C -0.208 4.208 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.373 0.627 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.169 0.831 42 H 0.413 0.587 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 14.537 14.065 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.033 3.967 3 H 0.072 0.928 4 O -0.371 6.371 5 C -0.147 4.147 6 C 0.009 3.991 7 H 0.097 0.903 8 C -0.020 4.020 9 O -0.308 6.308 10 C -0.031 4.031 11 C -0.103 4.103 12 N -0.319 5.319 13 C 0.295 3.705 14 O -0.394 6.394 15 C 0.278 3.722 16 O -0.409 6.409 17 N -0.314 5.314 18 C 0.035 3.965 19 C 0.023 3.977 20 C -0.537 4.537 21 H 0.080 0.920 22 C -0.131 4.131 23 N -0.511 5.511 24 Si 0.717 3.283 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.210 1.210 28 C -0.182 4.182 29 C -0.246 4.246 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.220 0.780 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.185 0.815 42 H 0.249 0.751 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.793 14.074 13.624 19.670 hybrid contribution -1.367 -0.516 0.488 1.540 sum 0.426 13.557 14.112 19.574 Atomic orbital electron populations 1.22423 0.96069 1.03123 1.02242 1.22055 0.93305 0.95284 0.86025 0.92831 1.86615 1.76146 1.58268 1.16113 1.22328 0.92736 1.03331 0.96325 1.22115 0.95479 0.96091 0.85405 0.90337 1.23317 0.79875 1.01740 0.97079 1.87941 1.22328 1.69370 1.51114 1.23023 1.00263 0.93933 0.85866 1.23985 0.78216 1.05496 1.02606 1.48052 1.07805 1.54127 1.21899 1.20374 0.86245 0.80185 0.83707 1.90722 1.15328 1.57771 1.75548 1.20057 0.86845 0.81289 0.84009 1.90244 1.14883 1.62669 1.73139 1.46041 1.11014 1.45282 1.29015 1.21373 0.96318 0.91849 0.86928 1.19045 0.94402 0.94602 0.89607 1.20454 1.07841 0.89005 1.36426 0.91975 1.24976 0.94526 0.98728 0.94859 1.70009 1.19453 1.20858 1.40764 0.86580 0.80832 0.82480 0.78426 1.19647 1.20891 1.20979 1.22520 0.98201 1.00347 0.97151 1.22995 0.97974 0.93946 1.09669 0.92609 0.91404 0.91593 0.77992 0.90102 0.86728 0.85926 0.92677 0.87795 0.92770 0.91013 0.81497 0.75127 0.93169 0.90176 0.92864 0.91572 0.89668 0.90097 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.53 37.16 0.35 -1.10 16 2 C 0.09 0.80 3.46 -26.73 -0.09 0.71 16 3 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 4 O -0.57 -4.69 9.94 -35.23 -0.35 -5.04 16 5 C -0.11 -1.30 3.03 -26.73 -0.08 -1.38 16 6 C 0.11 1.36 3.21 -67.43 -0.22 1.14 16 7 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 8 C 0.06 0.67 5.04 37.31 0.19 0.86 16 9 O -0.39 -5.00 10.74 -35.23 -0.38 -5.38 16 10 C 0.05 0.55 6.98 37.31 0.26 0.81 16 11 C 0.02 0.23 6.42 -3.53 -0.02 0.21 16 12 N -0.58 -8.20 3.02 -165.25 -0.50 -8.70 16 13 C 0.51 8.23 7.63 -11.59 -0.09 8.14 16 14 O -0.52 -8.61 12.16 5.49 0.07 -8.55 16 15 C 0.50 8.87 7.81 -11.58 -0.09 8.78 16 16 O -0.53 -9.90 13.01 5.50 0.07 -9.83 16 17 N -0.67 -12.56 5.50 -60.73 -0.33 -12.89 16 18 C 0.16 3.38 5.59 -4.04 -0.02 3.36 16 19 C 0.02 0.55 1.34 -155.66 -0.21 0.34 16 20 C -0.50 -12.74 8.82 -34.44 -0.30 -13.04 16 21 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 22 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 23 N -0.87 -23.63 12.90 55.43 0.71 -22.92 16 24 Si 0.89 20.41 29.54 -169.99 -5.02 15.38 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 C -0.14 -3.17 9.36 -26.73 -0.25 -3.42 16 29 C -0.21 -4.20 9.91 -26.73 -0.26 -4.46 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.37 1.57 9.08 45.56 0.41 1.98 16 34 H 0.08 1.15 7.40 -51.93 -0.38 0.77 16 35 H 0.11 1.49 6.14 -51.92 -0.32 1.17 16 36 H 0.12 1.29 5.95 -51.93 -0.31 0.98 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.17 2.48 3.91 -56.53 -0.22 2.26 16 42 H 0.41 7.61 7.96 -40.82 -0.33 7.28 16 43 H 0.05 1.06 7.90 -51.93 -0.41 0.65 16 44 H 0.08 1.94 8.12 -51.93 -0.42 1.52 16 45 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 46 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 47 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 48 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 49 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -28.49 390.07 -7.80 -36.29 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.01 Total: 12.99 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.94 Total: 2.76 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.12 Total: -44.51 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.59 Total: -28.80 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.49 -7.80 -36.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.053 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds