Wall clock time and date at job start Sat Apr 11 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46861 * 2 1 4 4 O 1.42895 * 109.47538 * 119.99650 * 2 1 3 5 5 C 1.53005 * 109.47421 * 240.00408 * 2 1 3 6 6 C 1.52994 * 109.47344 * 179.07225 * 5 2 1 7 7 H 1.09002 * 109.68473 * 59.81226 * 6 5 2 8 8 C 1.53296 * 109.68162 * 299.25747 * 6 5 2 9 9 O 1.42961 * 109.22529 * 187.97742 * 8 6 5 10 10 C 1.42961 * 114.16910 * 62.57553 * 9 8 6 11 11 C 1.53712 * 109.14709 * 297.29474 * 10 9 8 12 12 N 1.47147 * 109.68366 * 180.33198 * 6 5 2 13 13 C 1.34777 * 120.98136 * 350.22888 * 12 6 5 14 14 O 1.21352 * 119.99736 * 7.04309 * 13 12 6 15 15 C 1.49454 * 120.00199 * 187.03886 * 13 12 6 16 16 O 1.21351 * 119.99691 * 6.65905 * 15 13 12 17 17 N 1.34773 * 119.99603 * 186.37668 * 15 13 12 18 18 C 1.46507 * 119.99640 * 175.26278 * 17 15 13 19 19 C 1.52997 * 109.47192 * 185.01608 * 18 17 15 20 20 C 1.50696 * 115.55303 * 55.06453 * 19 18 17 21 21 H 1.08000 * 120.00210 * 274.76036 * 20 19 18 22 22 C 1.37879 * 120.00005 * 94.76334 * 20 19 18 23 23 N 1.31512 * 120.00154 * 4.92887 * 22 20 19 24 24 Si 1.86802 * 119.99938 * 184.93206 * 22 20 19 25 25 H 1.48499 * 109.47301 * 59.99412 * 24 22 20 26 26 H 1.48494 * 109.47017 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46670 * 299.99668 * 24 22 20 28 28 C 1.53001 * 117.49593 * 269.39528 * 19 18 17 29 29 C 1.53003 * 117.49710 * 200.73997 * 19 18 17 30 30 H 1.08998 * 109.47517 * 60.00306 * 1 2 3 31 31 H 1.09000 * 109.46861 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47712 * 299.99485 * 1 2 3 33 33 H 0.96698 * 114.00118 * 304.98691 * 4 2 1 34 34 H 1.08991 * 109.47186 * 59.06745 * 5 2 1 35 35 H 1.09004 * 109.46208 * 299.06818 * 5 2 1 36 36 H 1.09006 * 109.51283 * 307.89843 * 8 6 5 37 37 H 1.08997 * 109.51519 * 67.99949 * 8 6 5 38 38 H 1.09001 * 109.51004 * 57.34572 * 10 9 8 39 39 H 1.09000 * 109.51399 * 177.49473 * 10 9 8 40 40 H 1.08996 * 109.83461 * 292.85046 * 11 10 9 41 41 H 1.09005 * 109.74717 * 172.16322 * 11 10 9 42 42 H 0.97000 * 120.00721 * 355.26642 * 17 15 13 43 43 H 1.09010 * 109.47156 * 305.01312 * 18 17 15 44 44 H 1.08991 * 109.46930 * 65.00972 * 18 17 15 45 45 H 0.97000 * 120.00268 * 185.00416 * 23 22 20 46 46 H 1.09001 * 117.49894 * 359.97438 * 28 19 18 47 47 H 1.08997 * 117.50257 * 145.02100 * 28 19 18 48 48 H 1.08997 * 117.49795 * 214.97842 * 29 19 18 49 49 H 1.08995 * 117.49775 * 359.96839 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5698 -0.7010 -1.2610 7 1 3.9504 -1.2015 -0.3707 8 6 4.0667 0.7489 -1.2913 9 8 5.4825 0.7572 -1.4893 10 6 5.9029 0.1912 -2.7330 11 6 5.5010 -1.2919 -2.7734 12 7 4.0653 -1.3866 -2.4650 13 6 3.2299 -2.0855 -3.2588 14 8 2.0333 -2.0520 -3.0591 15 6 3.7770 -2.9017 -4.3848 16 8 4.9766 -3.0333 -4.5119 17 7 2.9378 -3.4963 -5.2558 18 6 3.4732 -4.2095 -6.4182 19 6 2.3182 -4.6796 -7.3046 20 6 1.3630 -3.6036 -7.7527 21 1 0.5404 -3.3126 -7.1163 22 6 1.5392 -2.9907 -8.9751 23 7 2.4809 -3.4105 -9.7915 24 14 0.4404 -1.5639 -9.4716 25 1 0.5908 -0.4588 -8.4911 26 1 0.8317 -1.0842 -10.8213 27 1 -0.9744 -2.0143 -9.4967 28 6 1.7393 -6.0695 -7.0324 29 6 2.5962 -5.8274 -8.2774 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6599 -0.3166 1.9960 34 1 1.6632 -0.2171 -2.1391 35 1 1.6903 -1.7536 -1.2409 36 1 3.5817 1.2830 -2.1084 37 1 3.8278 1.2355 -0.3457 38 1 5.4246 0.7232 -3.5553 39 1 6.9858 0.2763 -2.8242 40 1 6.0732 -1.8505 -2.0328 41 1 5.6906 -1.6979 -3.7671 42 1 1.9794 -3.4522 -5.1132 43 1 4.1199 -3.5419 -6.9879 44 1 4.0478 -5.0724 -6.0820 45 1 2.6530 -2.9345 -10.6190 46 1 2.1817 -6.6491 -6.2221 47 1 0.6677 -6.2057 -7.1777 48 1 2.0880 -5.8043 -9.2414 49 1 3.6021 -6.2471 -8.2863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256791924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:28 Heat of formation + Delta-G solvation = -112.454842 kcal Electronic energy + Delta-G solvation = -31268.119699 eV Core-core repulsion = 27004.447937 eV Total energy + Delta-G solvation = -4263.671761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.06793 -39.19833 -38.07442 -37.69100 -36.82143 -35.04554 -33.55082 -33.12401 -31.97239 -30.81546 -28.70108 -27.02079 -26.40876 -25.51188 -24.20254 -23.19387 -21.46119 -21.18494 -20.96920 -19.83464 -19.10363 -17.67600 -17.48048 -16.85042 -16.39299 -16.16470 -15.94048 -15.61621 -15.35852 -14.99825 -14.86776 -14.82237 -14.56268 -14.24046 -13.97737 -13.89429 -13.17556 -13.14288 -12.81791 -12.79180 -12.61249 -12.56643 -12.09317 -12.02626 -11.78317 -11.61786 -11.39701 -11.09153 -11.03391 -10.95025 -10.84378 -10.57944 -10.49640 -10.31817 -10.21731 -10.06396 -9.57130 -9.20269 -8.81301 -8.60586 -8.51251 -8.41217 -8.15618 -6.13033 -4.23086 1.68921 2.46092 3.24631 3.30119 3.32885 3.48562 3.61665 3.73680 4.05759 4.31928 4.53251 4.56516 4.73912 4.83010 4.88039 4.90911 4.96024 5.11230 5.11794 5.16067 5.32391 5.34294 5.44986 5.48777 5.53611 5.61972 5.72853 5.90887 5.92462 5.94664 6.10148 6.12501 6.24037 6.36153 6.42132 6.45622 6.62632 6.73912 6.90855 7.00088 7.08416 7.11083 7.28494 7.42871 7.56553 7.72411 7.75826 8.08598 8.27042 8.45228 8.79053 9.44608 10.93277 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.003205 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.567014 B = 8735.521124 C = 9230.328717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 H 0.052 0.948 4 O -0.566 6.566 5 C -0.104 4.104 6 C 0.115 3.885 7 H 0.092 0.908 8 C 0.052 3.948 9 O -0.382 6.382 10 C 0.045 3.955 11 C 0.039 3.961 12 N -0.588 5.588 13 C 0.512 3.488 14 O -0.514 6.514 15 C 0.496 3.504 16 O -0.534 6.534 17 N -0.659 5.659 18 C 0.159 3.841 19 C 0.014 3.986 20 C -0.499 4.499 21 H 0.060 0.940 22 C 0.075 3.925 23 N -0.875 5.875 24 Si 0.889 3.111 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.213 4.213 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.374 0.626 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.153 0.847 42 H 0.415 0.585 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.262 0.738 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 7.441 17.485 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.032 3.968 3 H 0.070 0.930 4 O -0.372 6.372 5 C -0.142 4.142 6 C 0.012 3.988 7 H 0.110 0.890 8 C -0.026 4.026 9 O -0.300 6.300 10 C -0.032 4.032 11 C -0.082 4.082 12 N -0.323 5.323 13 C 0.295 3.705 14 O -0.389 6.389 15 C 0.276 3.724 16 O -0.415 6.415 17 N -0.308 5.308 18 C 0.036 3.964 19 C 0.013 3.987 20 C -0.536 4.536 21 H 0.078 0.922 22 C -0.129 4.129 23 N -0.511 5.511 24 Si 0.716 3.284 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.251 4.251 29 C -0.169 4.169 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.221 0.779 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.252 0.748 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.787 7.066 16.896 18.525 hybrid contribution -1.412 1.156 -0.046 1.826 sum 1.375 8.222 16.849 18.799 Atomic orbital electron populations 1.22464 0.96124 1.03202 1.02313 1.22098 0.93272 0.95098 0.86350 0.93016 1.86566 1.72879 1.61699 1.16030 1.22240 0.92405 1.04286 0.95222 1.22042 0.95858 0.93423 0.87455 0.89016 1.23114 0.81913 0.95224 1.02344 1.87938 1.21833 1.81792 1.38474 1.23184 1.01037 0.92780 0.86241 1.23626 0.79345 0.97263 1.08012 1.48015 1.09437 1.50032 1.24859 1.20412 0.86354 0.80429 0.83283 1.90763 1.14818 1.63165 1.70192 1.20026 0.86929 0.81757 0.83680 1.90431 1.14684 1.61813 1.74606 1.45869 1.11197 1.50203 1.23525 1.21228 0.96570 0.94541 0.84059 1.19044 0.95025 0.87710 0.96937 1.20307 1.11672 1.19519 1.02148 0.92156 1.24964 0.95459 0.96776 0.95699 1.69996 1.31844 1.38218 1.11075 0.86716 0.81100 0.82875 0.77697 1.20209 1.21228 1.20102 1.23125 0.98884 1.02892 1.00171 1.22450 0.97780 1.02203 0.94428 0.91367 0.91493 0.92563 0.77932 0.89229 0.87984 0.92674 0.87806 0.92588 0.87493 0.90628 0.83058 0.74841 0.90968 0.93527 0.92800 0.91778 0.90265 0.88626 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.49 37.15 0.35 -1.19 16 2 C 0.09 0.84 3.34 -26.73 -0.09 0.76 16 3 H 0.05 0.41 6.60 -51.93 -0.34 0.06 16 4 O -0.57 -5.33 12.71 -35.23 -0.45 -5.78 16 5 C -0.10 -1.27 2.90 -26.73 -0.08 -1.35 16 6 C 0.12 1.43 3.06 -67.43 -0.21 1.22 16 7 H 0.09 1.20 7.71 -51.93 -0.40 0.80 16 8 C 0.05 0.56 5.71 37.31 0.21 0.78 16 9 O -0.38 -4.64 10.74 -35.23 -0.38 -5.02 16 10 C 0.04 0.50 7.00 37.53 0.26 0.77 16 11 C 0.04 0.50 6.19 -3.32 -0.02 0.48 16 12 N -0.59 -8.37 3.01 -165.00 -0.50 -8.87 16 13 C 0.51 8.46 7.68 -11.58 -0.09 8.37 16 14 O -0.51 -8.89 12.04 5.49 0.07 -8.83 16 15 C 0.50 9.04 7.75 -11.58 -0.09 8.95 16 16 O -0.53 -10.12 13.19 5.50 0.07 -10.05 16 17 N -0.66 -12.75 5.35 -60.73 -0.32 -13.08 16 18 C 0.16 3.36 5.57 -4.04 -0.02 3.33 16 19 C 0.01 0.31 1.76 -155.66 -0.27 0.04 16 20 C -0.50 -12.64 8.30 -34.44 -0.29 -12.93 16 21 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 22 C 0.08 1.95 5.41 -17.82 -0.10 1.86 16 23 N -0.88 -23.55 11.78 55.43 0.65 -22.90 16 24 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.21 -4.42 9.93 -26.69 -0.26 -4.68 16 29 C -0.13 -2.93 8.86 -26.69 -0.24 -3.17 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.37 1.91 9.03 45.56 0.41 2.32 16 34 H 0.09 1.18 7.21 -51.93 -0.37 0.81 16 35 H 0.10 1.50 6.35 -51.93 -0.33 1.17 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.93 6.90 -51.93 -0.36 0.58 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.15 2.22 4.42 -54.36 -0.24 1.98 16 42 H 0.41 8.01 7.63 -40.82 -0.31 7.69 16 43 H 0.07 1.68 8.14 -51.92 -0.42 1.25 16 44 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.26 6.82 8.32 -40.82 -0.34 6.49 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 48 H 0.10 2.35 7.52 -51.93 -0.39 1.96 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -28.81 389.78 -7.88 -36.69 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -6.95 Total: 13.37 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.92 Total: 3.22 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.17 Total: -44.85 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.69 Total: -29.68 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.81 -7.88 -36.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.764 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds