Wall clock time and date at job start Sat Apr 11 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46861 * 2 1 4 4 O 1.42895 * 109.47538 * 119.99650 * 2 1 3 5 5 C 1.53005 * 109.47421 * 240.00408 * 2 1 3 6 6 C 1.52994 * 109.47344 * 179.07225 * 5 2 1 7 7 H 1.09002 * 109.68473 * 59.81226 * 6 5 2 8 8 C 1.53296 * 109.68162 * 299.25747 * 6 5 2 9 9 O 1.42961 * 109.22529 * 187.97742 * 8 6 5 10 10 C 1.42961 * 114.16910 * 62.57553 * 9 8 6 11 11 C 1.53712 * 109.14709 * 297.29474 * 10 9 8 12 12 N 1.47147 * 109.68366 * 180.33198 * 6 5 2 13 13 C 1.34777 * 120.98136 * 350.22888 * 12 6 5 14 14 O 1.21352 * 119.99736 * 7.04309 * 13 12 6 15 15 C 1.49454 * 120.00199 * 187.03886 * 13 12 6 16 16 O 1.21351 * 119.99691 * 6.65905 * 15 13 12 17 17 N 1.34773 * 119.99603 * 186.37668 * 15 13 12 18 18 C 1.46507 * 119.99640 * 175.26278 * 17 15 13 19 19 C 1.52997 * 109.47192 * 185.01608 * 18 17 15 20 20 C 1.50696 * 115.55303 * 55.06453 * 19 18 17 21 21 H 1.08000 * 120.00210 * 274.76036 * 20 19 18 22 22 C 1.37879 * 120.00005 * 94.76334 * 20 19 18 23 23 N 1.31512 * 120.00154 * 4.92887 * 22 20 19 24 24 Si 1.86802 * 119.99938 * 184.93206 * 22 20 19 25 25 H 1.48499 * 109.47301 * 59.99412 * 24 22 20 26 26 H 1.48494 * 109.47017 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46670 * 299.99668 * 24 22 20 28 28 C 1.53001 * 117.49593 * 269.39528 * 19 18 17 29 29 C 1.53003 * 117.49710 * 200.73997 * 19 18 17 30 30 H 1.08998 * 109.47517 * 60.00306 * 1 2 3 31 31 H 1.09000 * 109.46861 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47712 * 299.99485 * 1 2 3 33 33 H 0.96698 * 114.00118 * 304.98691 * 4 2 1 34 34 H 1.08991 * 109.47186 * 59.06745 * 5 2 1 35 35 H 1.09004 * 109.46208 * 299.06818 * 5 2 1 36 36 H 1.09006 * 109.51283 * 307.89843 * 8 6 5 37 37 H 1.08997 * 109.51519 * 67.99949 * 8 6 5 38 38 H 1.09001 * 109.51004 * 57.34572 * 10 9 8 39 39 H 1.09000 * 109.51399 * 177.49473 * 10 9 8 40 40 H 1.08996 * 109.83461 * 292.85046 * 11 10 9 41 41 H 1.09005 * 109.74717 * 172.16322 * 11 10 9 42 42 H 0.97000 * 120.00721 * 355.26642 * 17 15 13 43 43 H 1.09010 * 109.47156 * 305.01312 * 18 17 15 44 44 H 1.08991 * 109.46930 * 65.00972 * 18 17 15 45 45 H 0.97000 * 120.00268 * 185.00416 * 23 22 20 46 46 H 1.09001 * 117.49894 * 359.97438 * 28 19 18 47 47 H 1.08997 * 117.50257 * 145.02100 * 28 19 18 48 48 H 1.08997 * 117.49795 * 214.97842 * 29 19 18 49 49 H 1.08995 * 117.49775 * 359.96839 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5698 -0.7010 -1.2610 7 1 3.9504 -1.2015 -0.3707 8 6 4.0667 0.7489 -1.2913 9 8 5.4825 0.7572 -1.4893 10 6 5.9029 0.1912 -2.7330 11 6 5.5010 -1.2919 -2.7734 12 7 4.0653 -1.3866 -2.4650 13 6 3.2299 -2.0855 -3.2588 14 8 2.0333 -2.0520 -3.0591 15 6 3.7770 -2.9017 -4.3848 16 8 4.9766 -3.0333 -4.5119 17 7 2.9378 -3.4963 -5.2558 18 6 3.4732 -4.2095 -6.4182 19 6 2.3182 -4.6796 -7.3046 20 6 1.3630 -3.6036 -7.7527 21 1 0.5404 -3.3126 -7.1163 22 6 1.5392 -2.9907 -8.9751 23 7 2.4809 -3.4105 -9.7915 24 14 0.4404 -1.5639 -9.4716 25 1 0.5908 -0.4588 -8.4911 26 1 0.8317 -1.0842 -10.8213 27 1 -0.9744 -2.0143 -9.4967 28 6 1.7393 -6.0695 -7.0324 29 6 2.5962 -5.8274 -8.2774 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6599 -0.3166 1.9960 34 1 1.6632 -0.2171 -2.1391 35 1 1.6903 -1.7536 -1.2409 36 1 3.5817 1.2830 -2.1084 37 1 3.8278 1.2355 -0.3457 38 1 5.4246 0.7232 -3.5553 39 1 6.9858 0.2763 -2.8242 40 1 6.0732 -1.8505 -2.0328 41 1 5.6906 -1.6979 -3.7671 42 1 1.9794 -3.4522 -5.1132 43 1 4.1199 -3.5419 -6.9879 44 1 4.0478 -5.0724 -6.0820 45 1 2.6530 -2.9345 -10.6190 46 1 2.1817 -6.6491 -6.2221 47 1 0.6677 -6.2057 -7.1777 48 1 2.0880 -5.8043 -9.2414 49 1 3.6021 -6.2471 -8.2863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256791924.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:25 Heat of formation + Delta-G solvation = -133.726256 kcal Electronic energy + Delta-G solvation = -31269.042096 eV Core-core repulsion = 27004.447937 eV Total energy + Delta-G solvation = -4264.594159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.29218 -40.47826 -39.26893 -38.63488 -38.39682 -36.22405 -34.96788 -34.14816 -33.92514 -31.60986 -29.78011 -28.58267 -27.40643 -27.31292 -25.41494 -24.24570 -22.92985 -22.44706 -22.00288 -21.47448 -20.60566 -18.87311 -18.38973 -18.14683 -17.86214 -17.34915 -17.19006 -16.87658 -16.70056 -16.36304 -16.11153 -15.95179 -15.81643 -15.48607 -15.29985 -14.98633 -14.60663 -14.53259 -14.26433 -13.88410 -13.76862 -13.56860 -13.45230 -13.32435 -12.95653 -12.81299 -12.79805 -12.69185 -12.41987 -12.32893 -12.08438 -11.97074 -11.83875 -11.49981 -11.37820 -11.28068 -11.05473 -10.86236 -10.40672 -10.22489 -10.10997 -9.84605 -9.61859 -8.11358 -6.25004 0.30877 1.20890 1.41063 1.42908 1.48970 2.09286 2.36575 2.42481 2.78034 3.14528 3.26748 3.37190 3.56720 3.64360 3.71252 3.92562 3.99702 4.08553 4.10997 4.20199 4.21852 4.30613 4.46786 4.50282 4.56875 4.61361 4.63135 4.67993 4.75949 4.80712 4.85730 4.93307 4.95652 5.04121 5.05183 5.17526 5.27446 5.30414 5.39221 5.46950 5.55314 5.72829 5.77596 5.89247 6.03113 6.28608 6.35235 6.69481 6.81565 6.94731 6.97063 7.44271 8.94182 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.003205 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.567014 B = 8735.521124 C = 9230.328717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.098 3.902 3 H 0.075 0.925 4 O -0.582 6.582 5 C -0.099 4.099 6 C 0.115 3.885 7 H 0.089 0.911 8 C 0.055 3.945 9 O -0.388 6.388 10 C 0.049 3.951 11 C 0.038 3.962 12 N -0.584 5.584 13 C 0.511 3.489 14 O -0.526 6.526 15 C 0.495 3.505 16 O -0.542 6.542 17 N -0.664 5.664 18 C 0.174 3.826 19 C -0.007 4.007 20 C -0.506 4.506 21 H 0.056 0.944 22 C 0.031 3.969 23 N -0.901 5.901 24 Si 0.942 3.058 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.272 1.272 28 C -0.188 4.188 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.415 0.585 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.260 0.740 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 8.733 19.512 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.039 3.961 3 H 0.093 0.907 4 O -0.391 6.391 5 C -0.137 4.137 6 C 0.013 3.987 7 H 0.107 0.893 8 C -0.023 4.023 9 O -0.307 6.307 10 C -0.028 4.028 11 C -0.084 4.084 12 N -0.318 5.318 13 C 0.294 3.706 14 O -0.403 6.403 15 C 0.276 3.724 16 O -0.423 6.423 17 N -0.313 5.313 18 C 0.051 3.949 19 C -0.008 4.008 20 C -0.544 4.544 21 H 0.074 0.926 22 C -0.170 4.170 23 N -0.539 5.539 24 Si 0.768 3.232 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.197 1.197 28 C -0.225 4.225 29 C -0.175 4.175 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.244 0.756 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.072 0.928 39 H 0.150 0.850 40 H 0.102 0.898 41 H 0.152 0.848 42 H 0.251 0.749 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.818 8.375 18.963 20.921 hybrid contribution -1.393 0.729 -0.599 1.683 sum 1.425 9.105 18.364 20.547 Atomic orbital electron populations 1.22445 0.95586 1.02435 1.03420 1.21982 0.93590 0.95446 0.85127 0.90715 1.86514 1.73240 1.62365 1.17009 1.22060 0.92222 1.02798 0.96625 1.22189 0.96014 0.94324 0.86171 0.89320 1.23204 0.81379 0.93913 1.03766 1.87939 1.22394 1.81626 1.38700 1.23236 1.02527 0.91066 0.85997 1.23636 0.78640 0.98907 1.07184 1.48136 1.09792 1.49068 1.24791 1.20097 0.86419 0.80828 0.83279 1.90779 1.15216 1.63792 1.70509 1.20397 0.86709 0.81468 0.83836 1.90447 1.15019 1.61916 1.74959 1.45785 1.11271 1.50791 1.23440 1.20882 0.95546 0.94344 0.84176 1.19109 0.95647 0.88072 0.97962 1.20573 1.11835 1.20006 1.01969 0.92570 1.25582 0.96617 0.98829 0.95956 1.70099 1.33290 1.39148 1.11330 0.85872 0.79740 0.80404 0.77160 1.20202 1.21207 1.19704 1.23101 0.98693 1.01092 0.99594 1.22341 0.98605 1.02751 0.93812 0.91645 0.93198 0.90082 0.75622 0.90507 0.90907 0.92493 0.85310 0.92809 0.85018 0.89794 0.84752 0.74878 0.93699 0.92396 0.93088 0.89219 0.90374 0.91239 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.49 71.98 0.68 -2.06 16 2 C 0.10 1.61 3.34 30.59 0.10 1.71 16 3 H 0.08 0.92 6.60 -2.39 -0.02 0.90 16 4 O -0.58 -9.66 12.71 -148.98 -1.89 -11.56 16 5 C -0.10 -2.36 2.90 30.59 0.09 -2.27 16 6 C 0.11 2.70 3.06 44.96 0.14 2.84 16 7 H 0.09 2.18 7.71 -2.39 -0.02 2.16 16 8 C 0.05 1.06 5.71 72.08 0.41 1.47 16 9 O -0.39 -8.44 10.74 -148.98 -1.60 -10.04 16 10 C 0.05 1.00 7.00 72.22 0.51 1.50 16 11 C 0.04 0.93 6.19 86.50 0.54 1.47 16 12 N -0.58 -16.24 3.01 -794.30 -2.39 -18.63 16 13 C 0.51 16.94 7.68 87.27 0.67 17.61 16 14 O -0.53 -18.45 12.04 -3.25 -0.04 -18.49 16 15 C 0.49 18.14 7.75 87.27 0.68 18.82 16 16 O -0.54 -20.62 13.19 -3.25 -0.04 -20.66 16 17 N -0.66 -25.88 5.35 -464.40 -2.48 -28.36 16 18 C 0.17 7.40 5.57 86.38 0.48 7.88 16 19 C -0.01 -0.33 1.76 -52.93 -0.09 -0.42 16 20 C -0.51 -25.85 8.30 25.60 0.21 -25.64 16 21 H 0.06 2.85 7.82 -2.91 -0.02 2.83 16 22 C 0.03 1.64 5.41 84.66 0.46 2.10 16 23 N -0.90 -49.35 11.78 21.45 0.25 -49.10 16 24 Si 0.94 42.16 29.54 68.60 2.03 44.19 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 26 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.19 -7.56 9.93 30.62 0.30 -7.26 16 29 C -0.14 -6.16 8.86 30.62 0.27 -5.89 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.39 2.92 9.03 -74.06 -0.67 2.25 16 34 H 0.08 2.01 7.21 -2.39 -0.02 1.99 16 35 H 0.07 2.17 6.35 -2.39 -0.02 2.16 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 37 H 0.13 1.85 6.90 -2.39 -0.02 1.84 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.14 3.89 4.42 -40.88 -0.18 3.71 16 42 H 0.41 16.16 7.63 -92.71 -0.71 15.46 16 43 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.06 2.31 8.09 -2.39 -0.02 2.29 16 45 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 46 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 48 H 0.07 3.48 7.52 -2.39 -0.02 3.47 16 49 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -61.85 389.78 -1.29 -63.15 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.56 Total: 37.64 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.44 Total: 11.86 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.62 Total: -96.09 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -3.58 Total: -60.74 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -61.85 -1.29 -63.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791924.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.580 kcal (2) G-P(sol) polarization free energy of solvation -61.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds