Wall clock time and date at job start Sat Apr 11 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00598 * 2 1 4 4 O 1.20830 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00369 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.64309 * 33.33120 * 5 3 2 7 7 C 1.55164 * 110.72222 * 156.47008 * 5 3 2 8 8 C 1.54911 * 101.58037 * 154.04344 * 7 5 3 9 9 N 1.47424 * 104.83353 * 322.98702 * 8 7 5 10 10 C 1.34775 * 125.64976 * 204.07992 * 9 8 7 11 11 O 1.21351 * 120.00021 * 180.02562 * 10 9 8 12 12 C 1.49449 * 119.99942 * 0.06242 * 10 9 8 13 13 O 1.21347 * 120.00164 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99853 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00044 * 180.02562 * 14 12 10 16 16 C 1.52992 * 109.47546 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47059 * 299.99993 * 16 15 14 18 18 C 1.53004 * 109.47132 * 59.99428 * 16 15 14 19 19 C 1.50702 * 109.47655 * 180.02562 * 16 15 14 20 20 H 1.08002 * 119.99663 * 359.97438 * 19 16 15 21 21 C 1.37870 * 119.99962 * 180.02562 * 19 16 15 22 22 N 1.31516 * 120.00196 * 359.97438 * 21 19 16 23 23 Si 1.86808 * 119.99854 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46700 * 59.99832 * 23 21 19 25 25 H 1.48494 * 109.47189 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47139 * 300.00169 * 23 21 19 27 27 C 1.47027 * 108.70100 * 24.13388 * 9 8 7 28 28 H 1.09004 * 109.87989 * 118.35524 * 27 9 8 29 29 C 1.52997 * 110.01206 * 239.44790 * 27 9 8 30 30 H 1.08996 * 109.47174 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.46998 * 60.00483 * 1 2 3 32 32 H 1.09003 * 109.47528 * 180.02562 * 1 2 3 33 33 H 1.09002 * 111.00399 * 272.11450 * 7 5 3 34 34 H 1.08997 * 111.00047 * 35.96853 * 7 5 3 35 35 H 1.09001 * 110.36939 * 81.83032 * 8 7 5 36 36 H 1.09005 * 110.36431 * 204.15428 * 8 7 5 37 37 H 0.96995 * 120.00109 * 359.97438 * 14 12 10 38 38 H 1.08998 * 109.46831 * 300.00252 * 15 14 12 39 39 H 1.09004 * 109.47495 * 59.99535 * 15 14 12 40 40 H 1.09007 * 109.47057 * 59.99600 * 17 16 15 41 41 H 1.09004 * 109.47382 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.46924 * 299.99797 * 17 16 15 43 43 H 1.09009 * 109.46897 * 60.00457 * 18 16 15 44 44 H 1.08997 * 109.47329 * 179.97438 * 18 16 15 45 45 H 1.08994 * 109.47397 * 300.00542 * 18 16 15 46 46 H 0.96998 * 119.99616 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.47646 * 181.97650 * 29 27 9 48 48 H 1.09006 * 109.47029 * 301.97765 * 29 27 9 49 49 H 1.09005 * 109.46709 * 61.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9944 0.4438 -0.5614 7 6 4.0447 2.6323 -0.5799 8 6 5.4247 2.7937 0.1052 9 7 5.2375 2.2517 1.4634 10 6 5.9733 2.5733 2.5458 11 8 5.7291 2.0624 3.6191 12 6 7.0893 3.5599 2.4245 13 8 7.3334 4.0709 1.3513 14 7 7.8247 3.8819 3.5070 15 6 8.9184 4.8493 3.3883 16 6 9.5859 5.0346 4.7524 17 6 8.5553 5.5510 5.7585 18 6 10.1417 3.6932 5.2347 19 6 10.7105 6.0303 4.6303 20 1 10.9277 6.4852 3.6751 21 6 11.4627 6.3598 5.7378 22 7 11.1985 5.8056 6.9008 23 14 12.8573 7.5935 5.5863 24 1 12.3175 8.8956 5.1188 25 1 13.5058 7.7725 6.9101 26 1 13.8573 7.0927 4.6094 27 6 4.1161 1.3011 1.4412 28 1 4.4663 0.3080 1.7227 29 6 3.0217 1.7598 2.4070 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.1504 2.5792 -1.6635 34 1 3.3697 3.4388 -0.2937 35 1 6.1832 2.2225 -0.4300 36 1 5.7041 3.8463 0.1521 37 1 7.6294 3.4737 4.3650 38 1 9.6523 4.4817 2.6711 39 1 8.5224 5.8052 3.0451 40 1 7.7415 4.8311 5.8469 41 1 9.0307 5.6826 6.7305 42 1 8.1593 6.5066 5.4149 43 1 10.8759 3.3253 4.5179 44 1 10.6176 3.8253 6.2063 45 1 9.3280 2.9734 5.3231 46 1 11.7280 6.0371 7.6798 47 1 2.2109 1.0315 2.4098 48 1 3.4363 1.8459 3.4114 49 1 2.6384 2.7291 2.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261416067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:06 Heat of formation + Delta-G solvation = -149.688190 kcal Electronic energy + Delta-G solvation = -30569.871377 eV Core-core repulsion = 26304.585057 eV Total energy + Delta-G solvation = -4265.286320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.48216 -40.44145 -38.86516 -37.67738 -36.73356 -36.44103 -33.46720 -32.39421 -31.57848 -30.89722 -28.57369 -26.70607 -26.28761 -25.72881 -25.34102 -24.35822 -22.94454 -22.10852 -20.30378 -19.61563 -18.86071 -18.11327 -17.69369 -17.07393 -16.85519 -16.76907 -16.01907 -15.87240 -15.29664 -15.17204 -14.75030 -14.42488 -14.11344 -14.01959 -13.65946 -13.50952 -13.40861 -12.98893 -12.90413 -12.79760 -12.52808 -12.44790 -12.37857 -12.22972 -12.01009 -11.42055 -11.41062 -11.34054 -11.20386 -11.18946 -11.00654 -10.86682 -10.77576 -10.74386 -10.40429 -10.20674 -9.65952 -9.50970 -9.20408 -8.97002 -8.81606 -8.60299 -8.37435 -6.02990 -4.13944 1.61836 1.70946 2.11381 2.48759 3.29341 3.34148 3.36892 3.42400 3.63266 3.93125 4.05260 4.32939 4.38309 4.63015 4.68879 4.70579 4.74386 4.77722 4.93472 4.97908 5.10118 5.19816 5.23490 5.27272 5.47251 5.63065 5.68573 5.80344 5.87671 5.99030 6.09813 6.10074 6.22181 6.45995 6.62502 6.82334 6.84396 6.93093 6.99580 7.06174 7.31147 7.32099 7.54370 7.55131 7.68314 7.93625 7.99401 8.11703 8.30935 8.39831 8.85951 9.51894 10.98332 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.002104 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.339903 B =13303.824339 C =13692.649352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.478 3.522 4 O -0.498 6.498 5 C -0.097 4.097 6 H 0.121 0.879 7 C -0.123 4.123 8 C 0.099 3.901 9 N -0.592 5.592 10 C 0.525 3.475 11 O -0.517 6.517 12 C 0.500 3.500 13 O -0.530 6.530 14 N -0.679 5.679 15 C 0.129 3.871 16 C 0.056 3.944 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.507 4.507 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.152 3.848 28 H 0.094 0.906 29 C -0.177 4.177 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.411 0.589 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.008 0.992 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.261 0.739 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 -12.215 -13.739 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.320 3.680 4 O -0.384 6.384 5 C -0.117 4.117 6 H 0.139 0.861 7 C -0.161 4.161 8 C -0.023 4.023 9 N -0.328 5.328 10 C 0.309 3.691 11 O -0.392 6.392 12 C 0.279 3.721 13 O -0.409 6.409 14 N -0.331 5.331 15 C 0.007 3.993 16 C 0.055 3.945 17 C -0.191 4.191 18 C -0.191 4.191 19 C -0.546 4.546 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.049 3.951 28 H 0.112 0.888 29 C -0.235 4.235 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.106 0.894 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.106 0.894 45 H 0.027 0.973 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.281 -11.786 -13.614 25.660 hybrid contribution 0.390 0.413 0.281 0.634 sum -17.892 -11.373 -13.333 25.044 Atomic orbital electron populations 1.23307 0.76028 1.03880 1.02720 1.86520 1.23656 1.33265 1.83998 1.23146 0.91259 0.81518 0.72042 1.90687 1.66801 1.36246 1.44680 1.22178 0.88206 1.02526 0.98787 0.86124 1.22978 0.97013 0.94997 1.01078 1.22712 0.96048 1.02860 0.80673 1.48254 1.31721 1.43122 1.09707 1.20204 0.83037 0.82909 0.82976 1.90748 1.68995 1.53048 1.26382 1.19797 0.83506 0.83302 0.85477 1.90671 1.69173 1.54066 1.26954 1.46219 1.32348 1.43252 1.11244 1.21946 0.86189 0.89795 1.01354 1.18383 0.93420 0.94478 0.88221 1.21858 0.96291 0.97297 1.03671 1.21855 0.98129 0.95397 1.03726 1.20897 1.14376 1.23919 0.95391 0.92406 1.24888 0.97260 0.96121 0.95264 1.69799 1.39932 1.42840 0.99667 0.86612 0.82247 0.81710 0.77141 1.20281 1.21334 1.20287 1.21368 0.87112 0.94065 0.92564 0.88836 1.22341 0.97509 1.02131 1.01503 0.91727 0.91766 0.87932 0.88707 0.88598 0.90309 0.87041 0.75185 0.91952 0.91975 0.97293 0.89438 0.95345 0.95352 0.89440 0.97275 0.92878 0.91852 0.89770 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.89 10.56 -39.24 -0.41 -3.30 16 3 C 0.48 4.38 5.11 36.00 0.18 4.57 16 4 O -0.50 -5.76 14.76 -18.75 -0.28 -6.04 16 5 C -0.10 -0.77 3.37 -89.94 -0.30 -1.07 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.12 -0.99 6.38 -24.58 -0.16 -1.14 16 8 C 0.10 1.02 6.06 -2.53 -0.02 1.00 16 9 N -0.59 -7.32 3.08 -163.51 -0.50 -7.83 16 10 C 0.52 8.14 7.70 -11.59 -0.09 8.05 16 11 O -0.52 -8.87 15.33 5.50 0.08 -8.79 16 12 C 0.50 8.62 7.86 -11.58 -0.09 8.53 16 13 O -0.53 -9.61 13.78 5.50 0.08 -9.53 16 14 N -0.68 -12.45 4.95 -60.74 -0.30 -12.75 16 15 C 0.13 2.65 4.50 -4.05 -0.02 2.63 16 16 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 17 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 18 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 19 C -0.51 -13.04 8.01 -34.44 -0.28 -13.32 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 22 N -0.88 -23.47 9.35 55.43 0.52 -22.96 16 23 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.15 1.55 3.42 -66.95 -0.23 1.32 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 C -0.18 -1.95 8.12 37.16 0.30 -1.65 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.92 7.23 -51.93 -0.38 0.54 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 1.34 6.16 -51.93 -0.32 1.02 16 37 H 0.41 7.46 5.63 -40.82 -0.23 7.23 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.01 0.17 6.86 -51.92 -0.36 -0.19 16 41 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 44 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 45 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 46 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 47 H 0.06 0.61 7.26 -51.93 -0.38 0.23 16 48 H 0.08 1.08 6.65 -51.93 -0.35 0.74 16 49 H 0.07 0.82 7.46 -51.93 -0.39 0.44 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -29.50 387.43 -6.77 -36.26 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.57 Total: 6.05 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 0.80 Total: 7.55 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.29 Total: -43.53 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.53 Total: -27.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.50 -6.77 -36.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.426 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds