Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00598 * 2 1 4 4 O 1.20830 * 119.99749 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00369 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.64309 * 33.33120 * 5 3 2 7 7 C 1.55164 * 110.72222 * 156.47008 * 5 3 2 8 8 C 1.54911 * 101.58037 * 154.04344 * 7 5 3 9 9 N 1.47424 * 104.83353 * 322.98702 * 8 7 5 10 10 C 1.34775 * 125.64976 * 204.07992 * 9 8 7 11 11 O 1.21351 * 120.00021 * 180.02562 * 10 9 8 12 12 C 1.49449 * 119.99942 * 0.06242 * 10 9 8 13 13 O 1.21347 * 120.00164 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99853 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00044 * 180.02562 * 14 12 10 16 16 C 1.52992 * 109.47546 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47059 * 299.99993 * 16 15 14 18 18 C 1.53004 * 109.47132 * 59.99428 * 16 15 14 19 19 C 1.50702 * 109.47655 * 180.02562 * 16 15 14 20 20 H 1.08002 * 119.99663 * 359.97438 * 19 16 15 21 21 C 1.37870 * 119.99962 * 180.02562 * 19 16 15 22 22 N 1.31516 * 120.00196 * 359.97438 * 21 19 16 23 23 Si 1.86808 * 119.99854 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46700 * 59.99832 * 23 21 19 25 25 H 1.48494 * 109.47189 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47139 * 300.00169 * 23 21 19 27 27 C 1.47027 * 108.70100 * 24.13388 * 9 8 7 28 28 H 1.09004 * 109.87989 * 118.35524 * 27 9 8 29 29 C 1.52997 * 110.01206 * 239.44790 * 27 9 8 30 30 H 1.08996 * 109.47174 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.46998 * 60.00483 * 1 2 3 32 32 H 1.09003 * 109.47528 * 180.02562 * 1 2 3 33 33 H 1.09002 * 111.00399 * 272.11450 * 7 5 3 34 34 H 1.08997 * 111.00047 * 35.96853 * 7 5 3 35 35 H 1.09001 * 110.36939 * 81.83032 * 8 7 5 36 36 H 1.09005 * 110.36431 * 204.15428 * 8 7 5 37 37 H 0.96995 * 120.00109 * 359.97438 * 14 12 10 38 38 H 1.08998 * 109.46831 * 300.00252 * 15 14 12 39 39 H 1.09004 * 109.47495 * 59.99535 * 15 14 12 40 40 H 1.09007 * 109.47057 * 59.99600 * 17 16 15 41 41 H 1.09004 * 109.47382 * 179.97438 * 17 16 15 42 42 H 1.08997 * 109.46924 * 299.99797 * 17 16 15 43 43 H 1.09009 * 109.46897 * 60.00457 * 18 16 15 44 44 H 1.08997 * 109.47329 * 179.97438 * 18 16 15 45 45 H 1.08994 * 109.47397 * 300.00542 * 18 16 15 46 46 H 0.96998 * 119.99616 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.47646 * 181.97650 * 29 27 9 48 48 H 1.09006 * 109.47029 * 301.97765 * 29 27 9 49 49 H 1.09005 * 109.46709 * 61.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9944 0.4438 -0.5614 7 6 4.0447 2.6323 -0.5799 8 6 5.4247 2.7937 0.1052 9 7 5.2375 2.2517 1.4634 10 6 5.9733 2.5733 2.5458 11 8 5.7291 2.0624 3.6191 12 6 7.0893 3.5599 2.4245 13 8 7.3334 4.0709 1.3513 14 7 7.8247 3.8819 3.5070 15 6 8.9184 4.8493 3.3883 16 6 9.5859 5.0346 4.7524 17 6 8.5553 5.5510 5.7585 18 6 10.1417 3.6932 5.2347 19 6 10.7105 6.0303 4.6303 20 1 10.9277 6.4852 3.6751 21 6 11.4627 6.3598 5.7378 22 7 11.1985 5.8056 6.9008 23 14 12.8573 7.5935 5.5863 24 1 12.3175 8.8956 5.1188 25 1 13.5058 7.7725 6.9101 26 1 13.8573 7.0927 4.6094 27 6 4.1161 1.3011 1.4412 28 1 4.4663 0.3080 1.7227 29 6 3.0217 1.7598 2.4070 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.1504 2.5792 -1.6635 34 1 3.3697 3.4388 -0.2937 35 1 6.1832 2.2225 -0.4300 36 1 5.7041 3.8463 0.1521 37 1 7.6294 3.4737 4.3650 38 1 9.6523 4.4817 2.6711 39 1 8.5224 5.8052 3.0451 40 1 7.7415 4.8311 5.8469 41 1 9.0307 5.6826 6.7305 42 1 8.1593 6.5066 5.4149 43 1 10.8759 3.3253 4.5179 44 1 10.6176 3.8253 6.2063 45 1 9.3280 2.9734 5.3231 46 1 11.7280 6.0371 7.6798 47 1 2.2109 1.0315 2.4098 48 1 3.4363 1.8459 3.4114 49 1 2.6384 2.7291 2.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261416067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = -167.392145 kcal Electronic energy + Delta-G solvation = -30570.639078 eV Core-core repulsion = 26304.585057 eV Total energy + Delta-G solvation = -4266.054021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = -0.16 seconds Orbital eigenvalues (eV) -42.34212 -41.50255 -40.05076 -38.73965 -38.18359 -37.43044 -35.11208 -33.37230 -32.74129 -32.38584 -29.19233 -27.98533 -27.58732 -27.31531 -27.13821 -25.65511 -23.67835 -23.25928 -21.25806 -20.76052 -20.50568 -19.11619 -18.60667 -18.09485 -17.77847 -17.68086 -17.50008 -17.12084 -16.66042 -16.56661 -16.18378 -15.68114 -15.28215 -14.96118 -14.76435 -14.73298 -14.44213 -14.25020 -14.13454 -14.05232 -13.73605 -13.45021 -13.23329 -13.20320 -13.11472 -12.96212 -12.93249 -12.67771 -12.61342 -12.42926 -12.27113 -12.11941 -12.10363 -11.83562 -11.78805 -11.52097 -11.50216 -11.27799 -10.74762 -10.54004 -10.40060 -10.15493 -9.92062 -8.00549 -6.17062 0.32827 0.94790 1.21083 1.46699 1.47822 1.54236 1.70082 2.11798 2.42195 2.53280 3.15601 3.23199 3.28070 3.41878 3.66882 3.93111 4.06744 4.15832 4.20180 4.30684 4.34289 4.35122 4.36379 4.48246 4.55549 4.68148 4.72604 4.74530 4.78814 4.86160 4.94324 5.01559 5.04030 5.07204 5.10243 5.17385 5.17712 5.26191 5.34323 5.49154 5.64825 5.68101 5.95778 6.11274 6.19006 6.23512 6.41539 6.64274 6.65775 6.86479 6.95540 7.50752 8.98454 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.002104 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.339903 B =13303.824339 C =13692.649352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.481 3.519 4 O -0.526 6.526 5 C -0.088 4.088 6 H 0.156 0.844 7 C -0.113 4.113 8 C 0.095 3.905 9 N -0.585 5.585 10 C 0.526 3.474 11 O -0.539 6.539 12 C 0.500 3.500 13 O -0.539 6.539 14 N -0.682 5.682 15 C 0.145 3.855 16 C 0.049 3.951 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.025 3.975 22 N -0.901 5.901 23 Si 0.949 3.051 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.147 3.853 28 H 0.107 0.893 29 C -0.170 4.170 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.412 0.588 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.260 0.740 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.097 -13.632 -15.537 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.324 3.676 4 O -0.415 6.415 5 C -0.107 4.107 6 H 0.174 0.826 7 C -0.151 4.151 8 C -0.026 4.026 9 N -0.319 5.319 10 C 0.309 3.691 11 O -0.416 6.416 12 C 0.281 3.719 13 O -0.417 6.417 14 N -0.334 5.334 15 C 0.023 3.977 16 C 0.049 3.951 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.563 4.563 20 H 0.071 0.929 21 C -0.175 4.175 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.200 1.200 27 C 0.044 3.956 28 H 0.125 0.875 29 C -0.228 4.228 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.160 -13.223 -15.453 27.942 hybrid contribution 0.551 0.821 0.782 1.261 sum -18.608 -12.403 -14.670 26.745 Atomic orbital electron populations 1.23569 0.74711 1.05776 1.02570 1.86514 1.24971 1.32490 1.83508 1.23324 0.91638 0.81401 0.71239 1.90688 1.67532 1.37253 1.46039 1.22211 0.87555 1.03639 0.97314 0.82644 1.22928 0.94938 0.94580 1.02658 1.22855 0.98040 1.01919 0.79817 1.48331 1.31230 1.42699 1.09684 1.19752 0.83045 0.82747 0.83569 1.90741 1.69668 1.53914 1.27277 1.20127 0.83622 0.83288 0.84860 1.90670 1.69461 1.54402 1.27196 1.46065 1.32269 1.43236 1.11810 1.21537 0.86572 0.90042 0.99593 1.18390 0.93099 0.94090 0.89550 1.21707 0.96598 0.97636 1.02199 1.21697 0.98515 0.95766 1.02104 1.21199 1.15342 1.24571 0.95191 0.92943 1.25514 0.99204 0.97621 0.95162 1.69923 1.40515 1.43584 0.99944 0.85764 0.79902 0.79834 0.76978 1.20137 1.21219 1.20031 1.21578 0.86066 0.93860 0.94056 0.87482 1.22249 0.98117 1.01908 1.00536 0.92235 0.91637 0.85070 0.85608 0.90381 0.88475 0.89017 0.75038 0.92487 0.92745 0.95307 0.91821 0.95836 0.95676 0.91858 0.95230 0.93082 0.90471 0.91846 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.85 10.56 -51.37 -0.54 -5.39 16 3 C 0.48 7.73 5.11 71.23 0.36 8.10 16 4 O -0.53 -11.54 14.76 21.95 0.32 -11.21 16 5 C -0.09 -1.12 3.37 -10.35 -0.03 -1.16 16 6 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 7 C -0.11 -1.54 6.38 31.99 0.20 -1.33 16 8 C 0.09 1.76 6.06 86.86 0.53 2.29 16 9 N -0.59 -13.62 3.08 -789.59 -2.44 -16.06 16 10 C 0.53 15.92 7.70 87.27 0.67 16.59 16 11 O -0.54 -18.23 15.33 -3.25 -0.05 -18.28 16 12 C 0.50 16.99 7.86 87.27 0.69 17.67 16 13 O -0.54 -19.18 13.78 -3.24 -0.04 -19.22 16 14 N -0.68 -24.71 4.95 -464.43 -2.30 -27.01 16 15 C 0.15 5.96 4.50 86.38 0.39 6.35 16 16 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 17 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 18 C -0.12 -5.58 8.08 71.98 0.58 -5.00 16 19 C -0.52 -27.12 8.01 25.60 0.21 -26.92 16 20 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 21 C 0.02 1.29 5.15 84.65 0.44 1.73 16 22 N -0.90 -48.34 9.35 21.45 0.20 -48.14 16 23 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.15 2.69 3.42 45.34 0.16 2.84 16 28 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 29 C -0.17 -3.61 8.12 71.98 0.58 -3.03 16 30 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 31 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.39 7.23 -2.39 -0.02 1.38 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.13 6.16 -2.38 -0.01 2.11 16 37 H 0.41 14.74 5.63 -92.71 -0.52 14.22 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.03 1.16 6.86 -2.38 -0.02 1.14 16 41 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 45 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 46 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 47 H 0.08 1.39 7.26 -2.39 -0.02 1.37 16 48 H 0.06 1.62 6.65 -2.38 -0.02 1.61 16 49 H 0.05 1.31 7.46 -2.38 -0.02 1.29 16 Total: -1.00 -63.67 387.43 4.15 -59.52 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.45 Total: 24.87 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.52 Total: 16.75 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -4.53 Total: -91.21 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -0.31 Total: -54.11 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.67 4.15 -59.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.871 kcal (2) G-P(sol) polarization free energy of solvation -63.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.16 seconds