Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.27691 * 2 1 4 4 C 1.54945 * 110.31454 * 237.90751 * 2 1 3 5 5 C 1.55300 * 100.94619 * 204.64041 * 4 2 1 6 6 H 1.09001 * 110.84511 * 275.94267 * 5 4 2 7 7 C 1.52994 * 110.84607 * 152.32388 * 5 4 2 8 8 N 1.46497 * 109.47478 * 66.45503 * 7 5 4 9 9 C 1.34782 * 120.00227 * 179.97438 * 8 7 5 10 10 O 1.21348 * 119.99818 * 359.97438 * 9 8 7 11 11 C 1.49447 * 119.99724 * 179.97438 * 9 8 7 12 12 O 1.21348 * 120.00458 * 0.02562 * 11 9 8 13 13 N 1.34782 * 119.99724 * 180.02562 * 11 9 8 14 14 C 1.47430 * 125.64686 * 0.02700 * 13 11 9 15 15 C 1.54910 * 104.82910 * 204.08944 * 14 13 11 16 16 C 1.55159 * 101.58230 * 322.99145 * 15 14 13 17 17 O 1.42899 * 110.71972 * 276.95995 * 16 15 14 18 18 C 1.50699 * 110.72015 * 153.86731 * 16 15 14 19 19 H 1.07998 * 119.99770 * 359.97438 * 18 16 15 20 20 C 1.37876 * 120.00060 * 180.02562 * 18 16 15 21 21 N 1.31519 * 119.99952 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99940 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 59.99709 * 22 20 18 24 24 H 1.48505 * 109.46709 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46849 * 299.99454 * 22 20 18 26 26 C 1.47020 * 125.64849 * 179.71256 * 13 11 9 27 27 C 1.54384 * 102.25022 * 34.13369 * 5 4 2 28 28 H 1.08997 * 109.82905 * 98.15891 * 27 5 4 29 29 C 1.53005 * 109.82597 * 219.03722 * 27 5 4 30 30 O 1.43234 * 107.58948 * 338.63933 * 27 5 4 31 31 H 1.09002 * 109.47153 * 182.08973 * 1 2 3 32 32 H 1.09001 * 109.46832 * 62.09164 * 1 2 3 33 33 H 1.09004 * 109.47261 * 302.09145 * 1 2 3 34 34 H 1.08999 * 111.12054 * 322.56644 * 4 2 1 35 35 H 1.09011 * 111.12251 * 86.71875 * 4 2 1 36 36 H 1.09009 * 109.47300 * 186.45645 * 7 5 4 37 37 H 1.08997 * 109.47194 * 306.44986 * 7 5 4 38 38 H 0.97004 * 119.99644 * 0.02562 * 8 7 5 39 39 H 1.08999 * 110.36379 * 322.92979 * 14 13 11 40 40 H 1.08996 * 110.36376 * 85.25059 * 14 13 11 41 41 H 1.08997 * 111.00580 * 81.06353 * 15 14 13 42 42 H 1.09000 * 111.00186 * 204.87882 * 15 14 13 43 43 H 0.96703 * 114.00359 * 179.97438 * 17 16 15 44 44 H 0.96999 * 119.99719 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.88781 * 298.40018 * 26 13 11 46 46 H 1.09001 * 109.87852 * 59.56436 * 26 13 11 47 47 H 1.09000 * 109.47152 * 60.00405 * 29 27 5 48 48 H 1.09003 * 109.46459 * 179.97438 * 29 27 5 49 49 H 1.08996 * 109.47500 * 300.00058 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0679 -0.7720 -1.2310 5 6 3.4700 -1.2019 -0.7200 6 1 4.1974 -0.4032 -0.8653 7 6 3.9285 -2.4898 -1.4068 8 7 4.1485 -2.2317 -2.8319 9 6 4.5593 -3.2277 -3.6417 10 8 4.7473 -4.3383 -3.1901 11 6 4.7832 -2.9644 -5.0956 12 8 4.5956 -1.8538 -5.5471 13 7 5.1934 -3.9606 -5.9055 14 6 5.4578 -5.3507 -5.4916 15 6 6.4474 -5.8982 -6.5502 16 6 5.9228 -5.2237 -7.8453 17 8 4.8332 -5.9661 -8.3963 18 6 7.0307 -5.0769 -8.8563 19 1 8.0259 -5.4242 -8.6210 20 6 6.7740 -4.4983 -10.0812 21 7 5.5622 -4.0749 -10.3674 22 14 8.1471 -4.3170 -11.3346 23 1 8.6851 -5.6580 -11.6770 24 1 7.6156 -3.6695 -12.5608 25 1 9.2320 -3.4796 -10.7627 26 6 5.4453 -3.8426 -7.3492 27 6 3.2112 -1.4427 0.7829 28 1 3.0624 -2.5067 0.9666 29 6 4.4001 -0.9360 1.6019 30 8 2.0286 -0.7177 1.1400 31 1 -0.3633 -1.0270 0.0375 32 1 -0.3633 0.4810 -0.9082 33 1 -0.3634 0.5460 0.8707 34 1 1.4471 -1.6402 -1.4522 35 1 2.1497 -0.1184 -2.0996 36 1 4.8578 -2.8331 -0.9520 37 1 3.1623 -3.2563 -1.2904 38 1 3.9993 -1.3437 -3.1926 39 1 5.9119 -5.3717 -4.5010 40 1 4.5349 -5.9307 -5.4992 41 1 7.4676 -5.5831 -6.3312 42 1 6.3827 -6.9840 -6.6207 43 1 4.4685 -5.5861 -9.2073 44 1 5.3815 -3.6682 -11.2293 45 1 4.5273 -3.5588 -7.8637 46 1 6.2199 -3.0974 -7.5306 47 1 4.5339 0.1314 1.4260 48 1 4.2111 -1.1084 2.6615 49 1 5.3019 -1.4695 1.3017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261473611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = -190.861037 kcal Electronic energy + Delta-G solvation = -30291.766597 eV Core-core repulsion = 26024.694889 eV Total energy + Delta-G solvation = -4267.071709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89454 -40.92732 -39.93542 -38.91454 -36.77000 -35.95986 -34.18451 -33.76722 -33.24307 -31.89929 -30.02030 -29.75471 -28.21442 -27.22606 -25.36209 -24.17906 -23.12143 -22.12381 -21.83905 -21.45108 -20.64609 -19.18399 -18.78504 -18.20978 -17.80899 -17.40702 -17.05379 -16.79870 -16.47788 -16.26866 -16.05851 -15.44001 -15.33748 -15.13630 -14.82705 -14.76506 -14.59345 -14.27821 -14.02601 -13.87333 -13.60831 -13.53589 -13.49797 -13.41968 -12.86145 -12.73955 -12.71443 -12.69886 -12.53750 -12.48398 -12.32263 -12.30586 -12.07813 -11.88088 -11.79120 -11.61478 -11.21413 -10.74405 -10.55759 -10.48211 -10.36315 -10.30814 -9.75716 -8.28135 -6.43905 0.31095 1.22175 1.44275 1.44971 1.52751 2.09244 2.36064 2.46950 2.76539 2.97980 3.25016 3.41034 3.52928 3.77444 3.79119 4.05532 4.07019 4.14714 4.16125 4.18997 4.34715 4.38210 4.41489 4.45879 4.59181 4.61567 4.67706 4.70081 4.76119 4.84182 4.91941 4.93685 5.02259 5.06060 5.09268 5.09849 5.16735 5.24050 5.30158 5.31697 5.32743 5.43063 5.72899 5.93688 6.03469 6.12769 6.35357 6.58484 6.65384 6.88928 7.27848 7.37707 8.78182 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002136 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.762506 B =13107.375754 C =13413.708433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 H 0.078 0.922 4 C -0.151 4.151 5 C -0.124 4.124 6 H 0.107 0.893 7 C 0.132 3.868 8 N -0.686 5.686 9 C 0.520 3.480 10 O -0.528 6.528 11 C 0.501 3.499 12 O -0.560 6.560 13 N -0.583 5.583 14 C 0.109 3.891 15 C -0.115 4.115 16 C 0.234 3.766 17 O -0.590 6.590 18 C -0.557 4.557 19 H 0.069 0.931 20 C 0.027 3.973 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.114 3.886 27 C 0.085 3.915 28 H 0.085 0.915 29 C -0.161 4.161 30 O -0.394 6.394 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.418 0.582 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.379 0.621 44 H 0.272 0.728 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 7.175 21.050 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.096 0.904 4 C -0.188 4.188 5 C -0.143 4.143 6 H 0.125 0.875 7 C 0.009 3.991 8 N -0.339 5.339 9 C 0.300 3.700 10 O -0.405 6.405 11 C 0.285 3.715 12 O -0.440 6.440 13 N -0.315 5.315 14 C -0.013 4.013 15 C -0.153 4.153 16 C 0.193 3.807 17 O -0.399 6.399 18 C -0.595 4.595 19 H 0.087 0.913 20 C -0.174 4.174 21 N -0.556 5.556 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.008 4.008 27 C 0.027 3.973 28 H 0.103 0.897 29 C -0.218 4.218 30 O -0.315 6.315 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.230 0.770 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.333 6.718 21.789 23.417 hybrid contribution 0.331 1.034 -1.957 2.238 sum -5.003 7.752 19.832 21.873 Atomic orbital electron populations 1.21900 0.93164 1.02716 1.03055 1.23051 0.95419 0.95676 0.84249 0.90445 1.23469 0.95078 1.01384 0.98904 1.22982 0.98641 0.97686 0.94961 0.87460 1.21515 1.02351 0.97353 0.77853 1.45658 1.65775 1.13144 1.09344 1.19692 0.78643 0.85377 0.86281 1.90702 1.50455 1.22940 1.76365 1.20273 0.79275 0.84100 0.87892 1.90700 1.52952 1.23127 1.77238 1.48720 1.61723 1.11155 1.09949 1.22644 0.99447 0.79720 0.99442 1.22834 0.98496 1.01303 0.92664 1.19710 0.84763 0.85226 0.90998 1.86085 1.52027 1.55741 1.46042 1.21797 0.96548 1.40936 1.00240 0.91288 1.25812 0.98172 0.93390 1.00020 1.69660 1.21241 1.40604 1.24113 0.85494 0.79095 0.78528 0.77852 1.19452 1.20867 1.19704 1.22803 0.98896 1.01813 0.77298 1.22675 0.85820 0.96703 0.92125 0.89744 1.22150 0.97047 1.02033 1.00593 1.88442 1.42641 1.65160 1.35214 0.92467 0.89930 0.91928 0.90310 0.88615 0.89796 0.90650 0.74455 0.87595 0.91417 0.89560 0.89151 0.76959 0.91804 0.93954 0.93308 0.92079 0.91922 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.62 71.98 0.69 -1.15 16 2 C 0.07 0.99 4.07 31.26 0.13 1.12 16 3 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 4 C -0.15 -1.91 5.73 32.05 0.18 -1.72 16 5 C -0.12 -1.53 2.59 -9.54 -0.02 -1.55 16 6 H 0.11 1.14 7.85 -2.39 -0.02 1.12 16 7 C 0.13 2.11 4.97 86.38 0.43 2.54 16 8 N -0.69 -14.86 5.40 -464.42 -2.51 -17.36 16 9 C 0.52 15.76 7.86 87.27 0.69 16.45 16 10 O -0.53 -17.15 13.78 -3.24 -0.04 -17.19 16 11 C 0.50 19.16 7.91 87.27 0.69 19.85 16 12 O -0.56 -23.54 16.80 -3.24 -0.05 -23.59 16 13 N -0.58 -24.21 3.33 -813.35 -2.70 -26.92 16 14 C 0.11 4.04 6.06 86.85 0.53 4.56 16 15 C -0.12 -4.57 6.23 31.99 0.20 -4.37 16 16 C 0.23 11.30 0.86 -10.35 -0.01 11.29 16 17 O -0.59 -30.08 13.08 -148.98 -1.95 -32.03 16 18 C -0.56 -28.76 8.11 25.60 0.21 -28.55 16 19 H 0.07 3.46 7.76 -2.91 -0.02 3.43 16 20 C 0.03 1.38 5.28 84.65 0.45 1.83 16 21 N -0.92 -48.57 10.97 21.45 0.24 -48.34 16 22 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.11 5.55 5.54 86.73 0.48 6.03 16 27 C 0.08 1.15 3.76 31.07 0.12 1.26 16 28 H 0.08 1.12 7.81 -2.39 -0.02 1.10 16 29 C -0.16 -1.83 9.44 71.98 0.68 -1.15 16 30 O -0.39 -6.85 10.70 -148.98 -1.59 -8.44 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.08 1.11 7.93 -2.39 -0.02 1.09 16 35 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.29 8.11 -2.39 -0.02 1.27 16 38 H 0.42 8.27 7.81 -92.71 -0.72 7.55 16 39 H 0.11 3.56 6.16 -2.39 -0.01 3.54 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.09 3.23 8.02 -2.39 -0.02 3.21 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.38 20.09 6.98 -74.06 -0.52 19.57 16 44 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.04 2.24 8.07 -2.39 -0.02 2.23 16 46 H 0.05 2.54 7.81 -2.39 -0.02 2.52 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -62.10 395.14 -1.44 -63.54 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -0.27 Total: 40.74 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 5.43 Total: 26.43 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -4.98 Total: -92.62 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -3.64 Total: -81.26 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -62.10 -1.44 -63.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261473611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.322 kcal (2) G-P(sol) polarization free energy of solvation -62.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds