Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47193 * 2 1 4 4 C 1.36932 * 120.00267 * 264.29101 * 3 2 1 5 5 H 1.08003 * 119.99803 * 188.64100 * 4 3 2 6 6 C 1.38808 * 120.00241 * 8.63493 * 4 3 2 7 7 N 1.31623 * 119.99718 * 24.60558 * 6 4 3 8 8 Si 1.86798 * 120.00523 * 204.60618 * 6 4 3 9 9 H 1.48498 * 109.47304 * 85.02704 * 8 6 4 10 10 H 1.48498 * 109.47227 * 205.02706 * 8 6 4 11 11 H 1.48504 * 109.47151 * 325.02732 * 8 6 4 12 12 C 1.46504 * 119.99784 * 84.29201 * 3 2 1 13 13 C 1.52999 * 109.46750 * 269.99740 * 12 3 2 14 14 C 1.53006 * 109.46679 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47009 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00079 * 179.97438 * 15 14 13 17 17 O 1.21275 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99738 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.47692 * 300.00069 * 18 16 15 20 20 C 1.53004 * 109.47255 * 60.00329 * 18 16 15 21 21 C 1.50701 * 109.46789 * 180.02562 * 18 16 15 22 22 C 1.38258 * 119.96309 * 299.72577 * 21 18 16 23 23 C 1.38217 * 120.06696 * 179.72836 * 22 21 18 24 24 C 1.38408 * 120.00128 * 0.54619 * 23 22 21 25 25 F 1.35099 * 120.03848 * 179.74657 * 24 23 22 26 26 C 1.38647 * 119.93077 * 359.73172 * 24 23 22 27 27 F 1.35095 * 120.03832 * 180.02562 * 26 24 23 28 28 C 1.38211 * 119.96376 * 120.00276 * 21 18 16 29 29 H 1.08998 * 109.46776 * 300.00013 * 1 2 3 30 30 H 1.09001 * 109.47043 * 60.00058 * 1 2 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46981 * 239.99893 * 2 1 3 33 33 H 1.08995 * 109.47127 * 120.00647 * 2 1 3 34 34 H 0.97000 * 119.99878 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.47032 * 149.99956 * 12 3 2 36 36 H 1.08996 * 109.47244 * 29.99688 * 12 3 2 37 37 H 1.08999 * 109.47098 * 60.00710 * 13 12 3 38 38 H 1.08997 * 109.47708 * 299.99813 * 13 12 3 39 39 H 1.08997 * 109.47064 * 60.00920 * 14 13 12 40 40 H 1.08996 * 109.47400 * 300.00000 * 14 13 12 41 41 H 0.97004 * 119.99845 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.46648 * 59.99977 * 20 18 16 43 43 H 1.08996 * 109.47013 * 179.97438 * 20 18 16 44 44 H 1.08998 * 109.47005 * 299.99673 * 20 18 16 45 45 H 1.07999 * 119.96640 * 0.02562 * 22 21 18 46 46 H 1.07998 * 119.99903 * 180.27516 * 23 22 21 47 47 H 1.08003 * 120.00466 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1712 6 6 2.0732 1.3645 -2.3873 7 7 1.0959 0.4858 -2.4602 8 14 3.0771 1.7731 -3.9087 9 1 4.3047 0.9378 -3.9309 10 1 2.2690 1.4977 -5.1237 11 1 3.4557 3.2088 -3.8810 12 6 2.1435 2.1138 1.2625 13 6 0.8339 2.8473 1.5584 14 6 0.9644 3.6120 2.8773 15 7 -0.2894 4.3149 3.1604 16 6 -0.4076 5.0585 4.2782 17 8 0.5242 5.1461 5.0495 18 6 -1.6975 5.7810 4.5696 19 1 -1.9115 6.4822 3.7631 20 6 -2.8372 4.7660 4.6788 21 6 -1.5689 6.5342 5.8686 22 6 -1.3022 5.8501 7.0400 23 6 -1.1782 6.5394 8.2316 24 6 -1.3324 7.9146 8.2549 25 9 -1.2165 8.5885 9.4200 26 6 -1.6056 8.6001 7.0811 27 9 -1.7560 9.9425 7.1012 28 6 -1.7235 7.9075 5.8884 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.8973 0.0502 -3.3039 35 1 2.9553 2.8370 1.1839 36 1 2.3579 1.4132 2.0695 37 1 0.0221 2.1241 1.6370 38 1 0.6194 3.5480 0.7515 39 1 1.7761 4.3352 2.7991 40 1 1.1786 2.9110 3.6840 41 1 -1.0349 4.2445 2.5436 42 1 -2.6232 4.0649 5.4854 43 1 -3.7701 5.2886 4.8900 44 1 -2.9301 4.2216 3.7391 45 1 -1.1857 4.7765 7.0232 46 1 -0.9654 6.0043 9.1453 47 1 -1.9367 8.4403 4.9734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266112355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = -85.363517 kcal Electronic energy + Delta-G solvation = -28783.152991 eV Core-core repulsion = 24409.568482 eV Total energy + Delta-G solvation = -4373.584509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -49.73546 -48.81275 -40.54230 -38.81740 -36.61368 -34.97740 -34.38767 -32.07104 -31.25861 -30.45341 -29.45521 -28.76533 -25.74584 -24.75513 -23.62486 -23.43326 -22.20870 -21.15982 -20.41804 -19.82640 -18.27114 -17.73758 -17.38327 -16.82334 -16.65261 -16.48515 -16.00453 -15.66250 -15.22642 -15.06969 -14.83929 -14.74660 -14.31360 -14.27678 -13.94972 -13.51408 -13.39618 -13.22645 -13.09402 -12.81633 -12.63786 -12.26021 -11.99325 -11.91853 -11.86098 -11.66552 -11.45883 -11.40650 -11.30157 -10.90024 -10.73975 -10.43565 -10.34501 -9.93024 -9.79440 -9.60470 -9.38331 -9.36768 -9.01020 -8.93538 -8.38000 -6.92082 -5.79196 -3.10124 0.56280 0.67908 2.53493 2.88633 3.27151 3.37773 3.45428 3.46192 3.47521 3.95379 4.07337 4.21507 4.48271 4.55021 4.65420 4.70006 4.77506 4.85441 5.17310 5.25849 5.32060 5.35565 5.41438 5.44529 5.45774 5.56374 5.66617 5.74538 5.76367 5.84839 6.01646 6.06722 6.15470 6.37071 6.40536 6.50933 6.57841 6.71934 6.83834 6.90338 7.07779 7.14916 7.47476 7.64681 7.75106 8.06645 8.14792 8.34526 9.22368 9.85501 10.30307 11.24700 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.001828 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.987101 B =15316.166383 C =15672.826741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.155 4.155 14 C 0.119 3.881 15 N -0.722 5.722 16 C 0.513 3.487 17 O -0.536 6.536 18 C -0.074 4.074 19 H 0.110 0.890 20 C -0.143 4.143 21 C -0.045 4.045 22 C -0.064 4.064 23 C -0.125 4.125 24 C 0.065 3.935 25 F -0.131 7.131 26 C 0.064 3.936 27 F -0.130 7.130 28 C -0.118 4.118 29 H 0.012 0.988 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.002 0.998 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.401 0.599 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.146 0.854 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.107 10.151 17.950 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.377 4.377 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.726 3.274 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.195 4.195 14 C -0.004 4.004 15 N -0.373 5.373 16 C 0.298 3.702 17 O -0.413 6.413 18 C -0.096 4.096 19 H 0.128 0.872 20 C -0.201 4.201 21 C -0.046 4.046 22 C -0.083 4.083 23 C -0.144 4.144 24 C 0.045 3.955 25 F -0.110 7.110 26 C 0.044 3.956 27 F -0.109 7.109 28 C -0.137 4.137 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.235 0.765 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.441 10.177 18.378 23.032 hybrid contribution 0.010 0.644 -0.987 1.178 sum -9.431 10.820 17.391 22.549 Atomic orbital electron populations 1.22412 0.99391 0.98144 1.00965 1.20800 0.92447 0.84513 0.98173 1.44254 1.75761 1.10225 1.01589 1.19277 1.31207 1.03599 0.83582 0.90916 1.24717 0.98001 1.00079 0.97316 1.70149 1.27321 1.31972 1.24878 0.86386 0.80365 0.77834 0.82768 1.21633 1.22017 1.20808 1.20668 0.93649 0.94163 0.88750 1.22723 1.02906 0.99705 0.94213 1.21535 0.85125 0.95354 0.98414 1.46155 1.17632 1.49790 1.23731 1.20325 0.89055 0.79295 0.81493 1.90728 1.40561 1.62513 1.47491 1.20338 0.94936 0.98257 0.96023 0.87206 1.21833 0.96726 0.98095 1.03419 1.19218 0.98549 0.92233 0.94605 1.20894 0.95893 1.00951 0.90532 1.21064 1.01771 0.91213 1.00373 1.17709 1.06095 0.90855 0.80825 1.91523 1.93666 1.80213 1.45552 1.17564 1.06427 0.77803 0.93776 1.91527 1.93366 1.28820 1.97170 1.20931 1.01966 0.93998 0.96797 0.96856 0.89171 0.96327 0.89511 0.97985 0.93849 0.93561 0.94231 0.91585 0.91457 0.91811 0.91894 0.76464 0.91553 0.90961 0.91029 0.84337 0.83602 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.58 37.16 0.36 -2.91 16 2 C 0.17 3.84 5.64 -4.04 -0.02 3.81 16 3 N -0.60 -13.99 2.54 -173.24 -0.44 -14.42 16 4 C -0.25 -6.41 9.70 -15.06 -0.15 -6.56 16 5 H 0.07 1.86 7.93 -52.48 -0.42 1.45 16 6 C 0.00 -0.11 4.91 -17.43 -0.09 -0.20 16 7 N -0.90 -24.20 8.54 55.49 0.47 -23.73 16 8 Si 0.90 21.04 29.62 -169.99 -5.03 16.01 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.16 2.95 5.71 -4.04 -0.02 2.92 16 13 C -0.15 -2.47 5.53 -26.73 -0.15 -2.62 16 14 C 0.12 1.62 5.68 -4.04 -0.02 1.59 16 15 N -0.72 -8.05 5.45 -60.29 -0.33 -8.38 16 16 C 0.51 5.86 7.03 -10.99 -0.08 5.78 16 17 O -0.54 -8.12 15.12 5.56 0.08 -8.03 16 18 C -0.07 -0.58 2.90 -92.92 -0.27 -0.85 16 19 H 0.11 0.65 7.87 -51.93 -0.41 0.24 16 20 C -0.14 -0.84 8.90 37.16 0.33 -0.51 16 21 C -0.05 -0.40 4.39 -104.62 -0.46 -0.86 16 22 C -0.06 -0.58 7.93 -39.58 -0.31 -0.89 16 23 C -0.13 -1.10 10.02 -39.53 -0.40 -1.49 16 24 C 0.07 0.67 7.31 -39.37 -0.29 0.38 16 25 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 26 C 0.06 0.66 7.31 -39.36 -0.29 0.38 16 27 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 28 C -0.12 -1.04 9.65 -39.52 -0.38 -1.42 16 29 H 0.01 0.25 5.98 -51.93 -0.31 -0.06 16 30 H 0.09 2.24 6.28 -51.93 -0.33 1.92 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 2.26 5.87 -51.93 -0.31 1.96 16 33 H 0.00 0.04 7.97 -51.93 -0.41 -0.37 16 34 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 36 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 37 H 0.07 1.09 5.93 -51.93 -0.31 0.78 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.40 3.65 7.89 -40.82 -0.32 3.33 16 42 H 0.07 0.41 7.37 -51.93 -0.38 0.02 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.38 7.56 -51.93 -0.39 -0.02 16 45 H 0.14 1.14 7.51 -52.49 -0.39 0.75 16 46 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.15 0.97 7.94 -52.48 -0.42 0.55 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -30.03 388.32 -8.45 -38.48 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.90 Total: 0.50 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.24 Total: -3.43 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.29 Total: -46.53 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.03 -8.45 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266112355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.882 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds