Wall clock time and date at job start Sat Apr 11 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00417 * 2 1 4 4 H 1.09000 * 109.46786 * 30.00268 * 3 2 1 5 5 C 1.53003 * 109.47110 * 270.00654 * 3 2 1 6 6 C 1.50697 * 109.47315 * 150.00236 * 3 2 1 7 7 O 1.21277 * 119.99760 * 12.33934 * 6 3 2 8 8 N 1.34776 * 120.00262 * 192.33620 * 6 3 2 9 9 C 1.47481 * 125.66753 * 175.03041 * 8 6 3 10 10 C 1.55039 * 104.90770 * 204.04384 * 9 8 6 11 11 C 1.54456 * 101.52702 * 323.67582 * 10 9 8 12 12 C 1.47196 * 125.66308 * 355.07207 * 8 6 3 13 13 C 1.52179 * 110.34626 * 153.46201 * 11 10 9 14 14 N 1.46242 * 109.96174 * 169.57824 * 13 11 10 15 15 C 1.46502 * 118.79952 * 162.74461 * 14 13 11 16 16 C 1.53001 * 109.46820 * 269.99316 * 15 14 13 17 17 C 1.50704 * 109.46908 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00370 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99615 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99433 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00234 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47429 * 89.99850 * 21 19 17 23 23 H 1.48500 * 109.47237 * 209.99658 * 21 19 17 24 24 H 1.48499 * 109.47205 * 329.99563 * 21 19 17 25 25 C 1.33841 * 122.40445 * 342.73331 * 14 13 11 26 26 O 1.21280 * 118.65036 * 182.88107 * 25 14 13 27 27 C 1.50290 * 122.69861 * 2.60467 * 25 14 13 28 28 O 1.42281 * 110.33702 * 276.04103 * 11 10 9 29 29 H 1.08997 * 109.47243 * 59.99447 * 1 2 3 30 30 H 1.08991 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46541 * 299.99917 * 1 2 3 32 32 H 1.08998 * 109.47163 * 64.74655 * 5 3 2 33 33 H 1.09003 * 109.46712 * 184.73829 * 5 3 2 34 34 H 1.08995 * 109.47175 * 304.73548 * 5 3 2 35 35 H 1.08996 * 110.35451 * 322.89823 * 9 8 6 36 36 H 1.09006 * 110.35318 * 85.18650 * 9 8 6 37 37 H 1.08993 * 111.01450 * 205.61693 * 10 9 8 38 38 H 1.09000 * 111.01199 * 81.73374 * 10 9 8 39 39 H 1.09000 * 109.91068 * 59.05361 * 12 8 6 40 40 H 1.08996 * 109.91248 * 297.78746 * 12 8 6 41 41 H 1.09007 * 109.38782 * 289.72453 * 13 11 10 42 42 H 1.09003 * 109.38893 * 49.41957 * 13 11 10 43 43 H 1.09000 * 109.47059 * 29.98828 * 15 14 13 44 44 H 1.08998 * 109.47379 * 149.99613 * 15 14 13 45 45 H 1.08996 * 109.47501 * 300.00040 * 16 15 14 46 46 H 1.09002 * 109.47354 * 59.99867 * 16 15 14 47 47 H 0.96996 * 119.99428 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.39276 * 103.52767 * 27 25 14 49 49 H 1.08990 * 109.39508 * 223.33945 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3387 1.2638 0.7103 7 8 3.8528 0.1972 0.9728 8 7 3.9555 2.4118 1.0539 9 6 5.1997 2.5181 1.8387 10 6 5.1517 3.9320 2.4729 11 6 4.4904 4.7540 1.3447 12 6 3.4987 3.7679 0.7090 13 6 3.7600 5.9565 1.9247 14 7 3.3506 6.8585 0.8488 15 6 2.3209 7.8636 1.1240 16 6 0.9409 7.2757 0.8221 17 6 -0.1184 8.3094 1.1058 18 1 0.1642 9.2878 1.4649 19 6 -1.4485 8.0062 0.9057 20 7 -2.3730 8.9085 1.1527 21 14 -1.9375 6.3140 0.2838 22 1 -2.1612 5.4077 1.4386 23 1 -3.1874 6.4208 -0.5109 24 1 -0.8527 5.7683 -0.5709 25 6 3.8824 6.7995 -0.3780 26 8 3.5308 7.6149 -1.2040 27 6 4.9019 5.7680 -0.7722 28 8 5.4676 5.1695 0.3977 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.2497 1.8825 -1.9311 33 1 2.7373 2.7296 -1.4436 34 1 2.8137 1.0342 -1.9803 35 1 5.2239 1.7545 2.6161 36 1 6.0683 2.4243 1.1867 37 1 6.1555 4.2987 2.6868 38 1 4.5357 3.9363 3.3721 39 1 2.4993 3.9362 1.1101 40 1 3.4929 3.8935 -0.3737 41 1 2.8779 5.6169 2.4675 42 1 4.4223 6.4867 2.6091 43 1 2.3696 8.1560 2.1729 44 1 2.4889 8.7377 0.4948 45 1 0.8921 6.9832 -0.2267 46 1 0.7728 6.4016 1.4512 47 1 -3.3087 8.6950 1.0123 48 1 4.4227 4.9982 -1.3770 49 1 5.6926 6.2439 -1.3521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269774634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:02 Heat of formation + Delta-G solvation = -136.396014 kcal Electronic energy + Delta-G solvation = -32059.886194 eV Core-core repulsion = 27795.176266 eV Total energy + Delta-G solvation = -4264.709928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.52443 -40.10423 -38.68944 -37.66419 -36.27668 -35.71694 -33.20773 -32.79561 -31.39916 -30.62213 -29.33976 -28.15558 -27.08726 -26.53505 -24.80974 -24.74850 -22.81950 -21.81798 -20.60199 -19.97160 -18.60913 -18.19191 -17.74823 -17.17287 -16.77958 -16.48577 -16.32462 -15.79920 -15.71010 -15.50964 -15.01232 -14.80646 -14.45899 -14.36012 -14.06255 -13.89296 -13.50073 -13.33021 -13.19468 -13.10632 -13.01041 -12.80228 -12.69590 -12.65420 -12.28169 -12.08987 -11.93329 -11.76247 -11.72764 -11.40322 -11.26519 -11.05121 -10.73131 -10.51223 -10.26269 -10.17303 -9.97856 -9.75389 -9.46314 -9.24482 -9.00043 -8.66120 -8.43448 -6.15997 -4.15090 2.31453 2.35624 2.61516 2.90755 3.16642 3.23917 3.26229 3.28038 3.51828 3.91274 3.96895 4.09314 4.30781 4.32736 4.50958 4.58063 4.68075 4.75376 4.81553 4.88678 5.05311 5.06333 5.12986 5.15810 5.18035 5.20802 5.23764 5.29863 5.34119 5.38180 5.41386 5.44566 5.55654 5.61715 5.78560 5.83543 5.86629 6.20787 6.37935 6.49788 6.58720 6.71456 7.04220 7.10196 7.19326 7.55656 7.65061 7.86872 8.21887 8.38921 8.87687 9.45250 10.97321 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.004819 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.456473 B = 5808.484118 C = 8007.286077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.071 3.929 4 H 0.087 0.913 5 C -0.174 4.174 6 C 0.536 3.464 7 O -0.517 6.517 8 N -0.616 5.616 9 C 0.111 3.889 10 C -0.114 4.114 11 C 0.091 3.909 12 C 0.066 3.934 13 C 0.099 3.901 14 N -0.602 5.602 15 C 0.120 3.880 16 C -0.020 4.020 17 C -0.521 4.521 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.479 3.521 26 O -0.533 6.533 27 C 0.045 3.955 28 O -0.350 6.350 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.020 0.980 46 H 0.009 0.991 47 H 0.264 0.736 48 H 0.087 0.913 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.959 -14.034 0.951 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.279 6.279 3 C 0.009 3.991 4 H 0.105 0.895 5 C -0.232 4.232 6 C 0.323 3.677 7 O -0.391 6.391 8 N -0.353 5.353 9 C -0.011 4.011 10 C -0.152 4.152 11 C 0.050 3.950 12 C -0.057 4.057 13 C -0.025 4.025 14 N -0.335 5.335 15 C 0.000 4.000 16 C -0.058 4.058 17 C -0.559 4.559 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.192 1.192 25 C 0.265 3.735 26 O -0.410 6.410 27 C -0.034 4.034 28 O -0.268 6.268 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.038 0.962 46 H 0.027 0.973 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.118 -14.443 0.656 20.207 hybrid contribution -1.079 -0.455 -0.404 1.239 sum 13.039 -14.897 0.252 19.799 Atomic orbital electron populations 1.22926 0.80243 1.03332 1.00511 1.88016 1.19942 1.24896 1.94997 1.21899 0.93130 0.87045 0.96980 0.89532 1.22286 1.03854 1.02174 0.94843 1.20034 0.86182 0.82527 0.78931 1.90719 1.66068 1.28560 1.53782 1.48395 1.26508 1.05133 1.55223 1.22279 0.86712 0.97002 0.95093 1.22781 1.03324 0.93044 0.96075 1.22162 0.89216 0.92845 0.90740 1.22886 0.99243 0.81984 1.01573 1.21932 1.00089 0.89821 0.90707 1.47794 1.40198 1.35471 1.10038 1.21768 0.86704 0.90566 1.01011 1.19836 0.92265 0.96898 0.96820 1.20940 0.89891 1.00003 1.45100 0.90736 1.24972 0.96528 0.96850 0.94760 1.69898 1.00789 1.34120 1.48895 0.86817 0.78246 0.85168 0.79335 1.20305 1.21159 1.19154 1.20725 0.83261 0.86661 0.82807 1.90780 1.61695 1.39904 1.48620 1.22938 0.97510 0.94370 0.88615 1.88051 1.30959 1.78648 1.29179 0.93554 0.88958 0.93585 0.90729 0.90982 0.90764 0.89746 0.90551 0.87730 0.88250 0.89324 0.89965 0.88858 0.89913 0.90930 0.89725 0.96158 0.97324 0.92575 0.89510 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.69 9.91 -54.83 -0.54 -5.23 16 3 C 0.07 0.83 2.54 -27.88 -0.07 0.76 16 4 H 0.09 0.92 7.49 -51.93 -0.39 0.53 16 5 C -0.17 -1.77 9.44 37.16 0.35 -1.41 16 6 C 0.54 7.09 7.17 -10.99 -0.08 7.01 16 7 O -0.52 -8.69 16.84 -14.04 -0.24 -8.92 16 8 N -0.62 -6.63 3.33 -170.69 -0.57 -7.20 16 9 C 0.11 0.98 6.89 -2.43 -0.02 0.96 16 10 C -0.11 -0.79 6.20 -24.89 -0.15 -0.94 16 11 C 0.09 0.85 0.80 -89.95 -0.07 0.78 16 12 C 0.07 0.67 5.05 -3.34 -0.02 0.65 16 13 C 0.10 1.05 5.27 -4.60 -0.02 1.02 16 14 N -0.60 -8.97 2.82 -174.83 -0.49 -9.47 16 15 C 0.12 2.23 5.27 -4.04 -0.02 2.20 16 16 C -0.02 -0.45 4.36 -27.88 -0.12 -0.57 16 17 C -0.52 -14.19 9.66 -34.44 -0.33 -14.52 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 1.99 5.47 -17.81 -0.10 1.89 16 20 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 21 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 25 C 0.48 7.43 7.47 -11.60 -0.09 7.34 16 26 O -0.53 -10.62 16.33 5.56 0.09 -10.53 16 27 C 0.04 0.49 6.43 35.81 0.23 0.72 16 28 O -0.35 -3.60 10.41 -35.23 -0.37 -3.96 16 29 H 0.05 0.39 7.98 -51.93 -0.41 -0.02 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.69 7.98 -51.93 -0.41 0.27 16 33 H 0.07 0.68 5.51 -51.93 -0.29 0.39 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.56 8.02 -51.93 -0.42 0.14 16 39 H 0.09 0.92 7.37 -51.93 -0.38 0.54 16 40 H 0.08 0.84 3.72 -51.93 -0.19 0.65 16 41 H 0.09 0.95 7.78 -51.92 -0.40 0.55 16 42 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 44 H 0.08 1.76 7.22 -51.93 -0.37 1.38 16 45 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 46 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.09 0.85 6.43 -51.93 -0.33 0.52 16 49 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -35.87 388.28 -7.34 -43.21 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.75 Total: -0.95 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 0.58 Total: 7.25 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.29 Total: -42.80 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.06 Total: -28.65 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.87 -7.34 -43.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269774634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.185 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds