Wall clock time and date at job start Sat Apr 11 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00417 * 2 1 4 4 H 1.09000 * 109.46786 * 30.00268 * 3 2 1 5 5 C 1.53003 * 109.47110 * 270.00654 * 3 2 1 6 6 C 1.50697 * 109.47315 * 150.00236 * 3 2 1 7 7 O 1.21277 * 119.99760 * 12.33934 * 6 3 2 8 8 N 1.34776 * 120.00262 * 192.33620 * 6 3 2 9 9 C 1.47481 * 125.66753 * 175.03041 * 8 6 3 10 10 C 1.55039 * 104.90770 * 204.04384 * 9 8 6 11 11 C 1.54456 * 101.52702 * 323.67582 * 10 9 8 12 12 C 1.47196 * 125.66308 * 355.07207 * 8 6 3 13 13 C 1.52179 * 110.34626 * 153.46201 * 11 10 9 14 14 N 1.46242 * 109.96174 * 169.57824 * 13 11 10 15 15 C 1.46502 * 118.79952 * 162.74461 * 14 13 11 16 16 C 1.53001 * 109.46820 * 269.99316 * 15 14 13 17 17 C 1.50704 * 109.46908 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00370 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99615 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99433 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00234 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47429 * 89.99850 * 21 19 17 23 23 H 1.48500 * 109.47237 * 209.99658 * 21 19 17 24 24 H 1.48499 * 109.47205 * 329.99563 * 21 19 17 25 25 C 1.33841 * 122.40445 * 342.73331 * 14 13 11 26 26 O 1.21280 * 118.65036 * 182.88107 * 25 14 13 27 27 C 1.50290 * 122.69861 * 2.60467 * 25 14 13 28 28 O 1.42281 * 110.33702 * 276.04103 * 11 10 9 29 29 H 1.08997 * 109.47243 * 59.99447 * 1 2 3 30 30 H 1.08991 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46541 * 299.99917 * 1 2 3 32 32 H 1.08998 * 109.47163 * 64.74655 * 5 3 2 33 33 H 1.09003 * 109.46712 * 184.73829 * 5 3 2 34 34 H 1.08995 * 109.47175 * 304.73548 * 5 3 2 35 35 H 1.08996 * 110.35451 * 322.89823 * 9 8 6 36 36 H 1.09006 * 110.35318 * 85.18650 * 9 8 6 37 37 H 1.08993 * 111.01450 * 205.61693 * 10 9 8 38 38 H 1.09000 * 111.01199 * 81.73374 * 10 9 8 39 39 H 1.09000 * 109.91068 * 59.05361 * 12 8 6 40 40 H 1.08996 * 109.91248 * 297.78746 * 12 8 6 41 41 H 1.09007 * 109.38782 * 289.72453 * 13 11 10 42 42 H 1.09003 * 109.38893 * 49.41957 * 13 11 10 43 43 H 1.09000 * 109.47059 * 29.98828 * 15 14 13 44 44 H 1.08998 * 109.47379 * 149.99613 * 15 14 13 45 45 H 1.08996 * 109.47501 * 300.00040 * 16 15 14 46 46 H 1.09002 * 109.47354 * 59.99867 * 16 15 14 47 47 H 0.96996 * 119.99428 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.39276 * 103.52767 * 27 25 14 49 49 H 1.08990 * 109.39508 * 223.33945 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3387 1.2638 0.7103 7 8 3.8528 0.1972 0.9728 8 7 3.9555 2.4118 1.0539 9 6 5.1997 2.5181 1.8387 10 6 5.1517 3.9320 2.4729 11 6 4.4904 4.7540 1.3447 12 6 3.4987 3.7679 0.7090 13 6 3.7600 5.9565 1.9247 14 7 3.3506 6.8585 0.8488 15 6 2.3209 7.8636 1.1240 16 6 0.9409 7.2757 0.8221 17 6 -0.1184 8.3094 1.1058 18 1 0.1642 9.2878 1.4649 19 6 -1.4485 8.0062 0.9057 20 7 -2.3730 8.9085 1.1527 21 14 -1.9375 6.3140 0.2838 22 1 -2.1612 5.4077 1.4386 23 1 -3.1874 6.4208 -0.5109 24 1 -0.8527 5.7683 -0.5709 25 6 3.8824 6.7995 -0.3780 26 8 3.5308 7.6149 -1.2040 27 6 4.9019 5.7680 -0.7722 28 8 5.4676 5.1695 0.3977 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.2497 1.8825 -1.9311 33 1 2.7373 2.7296 -1.4436 34 1 2.8137 1.0342 -1.9803 35 1 5.2239 1.7545 2.6161 36 1 6.0683 2.4243 1.1867 37 1 6.1555 4.2987 2.6868 38 1 4.5357 3.9363 3.3721 39 1 2.4993 3.9362 1.1101 40 1 3.4929 3.8935 -0.3737 41 1 2.8779 5.6169 2.4675 42 1 4.4223 6.4867 2.6091 43 1 2.3696 8.1560 2.1729 44 1 2.4889 8.7377 0.4948 45 1 0.8921 6.9832 -0.2267 46 1 0.7728 6.4016 1.4512 47 1 -3.3087 8.6950 1.0123 48 1 4.4227 4.9982 -1.3770 49 1 5.6926 6.2439 -1.3521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269774634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:00 Heat of formation + Delta-G solvation = -162.535915 kcal Electronic energy + Delta-G solvation = -32061.019706 eV Core-core repulsion = 27795.176266 eV Total energy + Delta-G solvation = -4265.843439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -42.43705 -41.11687 -39.71257 -38.58408 -37.18192 -37.03418 -35.07338 -33.69951 -32.64767 -31.90215 -30.18934 -29.20699 -27.87798 -27.58676 -26.25600 -25.61999 -23.71629 -23.07937 -21.89674 -20.84822 -19.67531 -19.13197 -19.00645 -18.62936 -17.69690 -17.53007 -17.40159 -16.85626 -16.62752 -16.42138 -16.29105 -15.85937 -15.73020 -15.35713 -15.16871 -14.81864 -14.72980 -14.65439 -14.47817 -14.14854 -13.97018 -13.89991 -13.64825 -13.44675 -13.42218 -13.12334 -12.90321 -12.87617 -12.68806 -12.46234 -12.35102 -12.15914 -12.10329 -11.91599 -11.71438 -11.56789 -11.44439 -11.15755 -10.78537 -10.67859 -10.43047 -9.86503 -9.71437 -8.31106 -6.36056 1.30116 1.35895 1.35981 1.44774 1.46355 1.53691 1.81362 2.33638 2.42411 2.72805 3.04335 3.11899 3.16855 3.26498 3.52138 3.61935 3.76445 3.87169 3.98386 4.12424 4.14239 4.28778 4.35428 4.37249 4.37852 4.41074 4.45082 4.50107 4.53701 4.57778 4.63676 4.67461 4.76968 4.78339 4.82557 4.87825 5.02550 5.03805 5.05643 5.13881 5.32987 5.45471 5.62852 5.76626 5.93204 6.22752 6.23008 6.39116 6.71206 6.93669 7.03792 7.28551 8.85507 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.004819 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.456473 B = 5808.484118 C = 8007.286077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.389 6.389 3 C 0.068 3.932 4 H 0.099 0.901 5 C -0.170 4.170 6 C 0.531 3.469 7 O -0.563 6.563 8 N -0.609 5.609 9 C 0.104 3.896 10 C -0.099 4.099 11 C 0.093 3.907 12 C 0.062 3.938 13 C 0.092 3.908 14 N -0.600 5.600 15 C 0.132 3.868 16 C -0.010 4.010 17 C -0.531 4.531 18 H 0.035 0.965 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.255 1.255 23 H -0.288 1.288 24 H -0.250 1.250 25 C 0.473 3.527 26 O -0.587 6.587 27 C 0.056 3.944 28 O -0.346 6.346 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.004 0.996 46 H 0.032 0.968 47 H 0.266 0.734 48 H 0.104 0.896 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.099 -15.961 1.508 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.307 6.307 3 C 0.007 3.993 4 H 0.117 0.883 5 C -0.228 4.228 6 C 0.320 3.680 7 O -0.441 6.441 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.137 4.137 11 C 0.052 3.948 12 C -0.061 4.061 13 C -0.030 4.030 14 N -0.331 5.331 15 C 0.009 3.991 16 C -0.048 4.048 17 C -0.570 4.570 18 H 0.054 0.946 19 C -0.190 4.190 20 N -0.589 5.589 21 Si 0.768 3.232 22 H -0.179 1.179 23 H -0.214 1.214 24 H -0.174 1.174 25 C 0.261 3.739 26 O -0.468 6.468 27 C -0.023 4.023 28 O -0.264 6.264 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.022 0.978 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.122 0.878 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.302 -16.368 1.253 22.441 hybrid contribution -1.416 0.254 -0.533 1.534 sum 13.886 -16.114 0.720 21.284 Atomic orbital electron populations 1.23116 0.78704 1.04486 1.01269 1.87985 1.21752 1.25810 1.95175 1.22022 0.92579 0.86992 0.97756 0.88286 1.22270 1.04431 1.02188 0.93896 1.20370 0.86634 0.82438 0.78576 1.90692 1.67329 1.30194 1.55875 1.48416 1.26719 1.04837 1.54446 1.22454 0.85894 0.98325 0.95034 1.22832 1.04686 0.90709 0.95470 1.22227 0.89103 0.92210 0.91229 1.22982 0.99660 0.81649 1.01800 1.22275 1.01247 0.89664 0.89802 1.47782 1.38954 1.35217 1.11183 1.21320 0.86143 0.90420 1.01188 1.19679 0.92850 0.96229 0.96026 1.21299 0.91541 0.99758 1.44369 0.94622 1.25967 0.96497 1.01507 0.95000 1.70063 1.01301 1.36819 1.50719 0.85730 0.77979 0.79899 0.79554 1.17915 1.21429 1.17385 1.21589 0.83395 0.86713 0.82160 1.90759 1.63641 1.42173 1.50206 1.22912 0.96822 0.93468 0.89104 1.88085 1.30977 1.78251 1.29070 0.92450 0.87788 0.93067 0.89686 0.90255 0.91459 0.89869 0.90535 0.85715 0.86321 0.89071 0.89923 0.87758 0.87539 0.89292 0.92837 0.97751 0.95003 0.92470 0.87803 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.39 -9.64 9.91 -130.24 -1.29 -10.93 16 3 C 0.07 1.47 2.54 29.85 0.08 1.54 16 4 H 0.10 1.84 7.49 -2.39 -0.02 1.82 16 5 C -0.17 -3.11 9.44 71.98 0.68 -2.43 16 6 C 0.53 13.29 7.17 87.66 0.63 13.92 16 7 O -0.56 -18.70 16.84 15.72 0.26 -18.43 16 8 N -0.61 -11.58 3.33 -812.33 -2.71 -14.29 16 9 C 0.10 1.54 6.89 86.89 0.60 2.14 16 10 C -0.10 -0.94 6.20 31.79 0.20 -0.74 16 11 C 0.09 1.38 0.80 -10.36 -0.01 1.37 16 12 C 0.06 1.05 5.05 86.46 0.44 1.48 16 13 C 0.09 1.61 5.27 86.16 0.45 2.06 16 14 N -0.60 -16.55 2.82 -825.96 -2.33 -18.88 16 15 C 0.13 4.79 5.27 86.38 0.46 5.25 16 16 C -0.01 -0.42 4.36 29.85 0.13 -0.29 16 17 C -0.53 -29.41 9.66 25.60 0.25 -29.16 16 18 H 0.04 2.18 7.99 -2.91 -0.02 2.15 16 19 C 0.01 0.42 5.47 84.66 0.46 0.89 16 20 N -0.95 -58.11 13.96 21.45 0.30 -57.81 16 21 Si 0.95 41.90 27.47 68.60 1.88 43.79 16 22 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 25 C 0.47 13.88 7.47 87.67 0.66 14.53 16 26 O -0.59 -23.39 16.33 -3.03 -0.05 -23.44 16 27 C 0.06 1.07 6.43 71.11 0.46 1.53 16 28 O -0.35 -5.78 10.41 -148.98 -1.55 -7.33 16 29 H 0.06 0.83 7.98 -2.39 -0.02 0.81 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.08 1.36 7.98 -2.39 -0.02 1.34 16 33 H 0.08 1.30 5.51 -2.39 -0.01 1.29 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.12 0.74 8.02 -2.39 -0.02 0.72 16 39 H 0.09 1.54 7.37 -2.39 -0.02 1.52 16 40 H 0.08 1.41 3.72 -2.39 -0.01 1.41 16 41 H 0.10 1.65 7.78 -2.38 -0.02 1.63 16 42 H 0.11 1.43 8.12 -2.39 -0.02 1.41 16 43 H 0.09 2.91 8.04 -2.39 -0.02 2.90 16 44 H 0.05 2.28 7.22 -2.39 -0.02 2.26 16 45 H 0.00 0.19 7.20 -2.39 -0.02 0.18 16 46 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 47 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 48 H 0.10 1.70 6.43 -2.39 -0.02 1.69 16 49 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -81.36 388.28 2.11 -79.25 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.90 Total: 14.43 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.70 Total: 13.65 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -4.74 Total: -90.98 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -2.63 Total: -60.14 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.79 kcal Total: -81.36 2.11 -79.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269774634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.285 kcal (2) G-P(sol) polarization free energy of solvation -81.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds