Wall clock time and date at job start Sat Apr 11 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 H 1.09002 * 109.47077 * 29.99848 * 3 2 1 5 5 C 1.53001 * 109.47406 * 270.00546 * 3 2 1 6 6 C 1.50691 * 109.47488 * 150.00147 * 3 2 1 7 7 O 1.21288 * 119.99855 * 9.62033 * 6 3 2 8 8 N 1.34780 * 120.00548 * 189.62304 * 6 3 2 9 9 C 1.47082 * 125.62999 * 175.24206 * 8 6 3 10 10 C 1.54474 * 107.29666 * 181.00516 * 9 8 6 11 11 C 1.54322 * 102.86659 * 21.45115 * 10 9 8 12 12 C 1.47579 * 125.62406 * 355.25917 * 8 6 3 13 13 C 1.52177 * 110.85704 * 207.16052 * 11 10 9 14 14 N 1.46280 * 109.88186 * 283.83519 * 13 11 10 15 15 C 1.46499 * 118.81276 * 162.76369 * 14 13 11 16 16 C 1.53009 * 109.46910 * 269.72409 * 15 14 13 17 17 C 1.50698 * 109.47118 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99755 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99896 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00070 * 359.72558 * 19 17 16 22 22 H 1.48501 * 109.46970 * 90.00036 * 21 19 17 23 23 H 1.48504 * 109.47136 * 210.00065 * 21 19 17 24 24 H 1.48501 * 109.47174 * 330.00170 * 21 19 17 25 25 C 1.33838 * 122.37217 * 342.48012 * 14 13 11 26 26 O 1.21281 * 118.62237 * 183.02721 * 25 14 13 27 27 C 1.50281 * 122.75537 * 3.00243 * 25 14 13 28 28 O 1.42098 * 110.69865 * 83.71387 * 11 10 9 29 29 H 1.08999 * 109.47195 * 59.99919 * 1 2 3 30 30 H 1.09003 * 109.46518 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46871 * 299.99239 * 1 2 3 32 32 H 1.09003 * 109.46897 * 304.95811 * 5 3 2 33 33 H 1.08996 * 109.47112 * 64.95123 * 5 3 2 34 34 H 1.08998 * 109.47263 * 184.95229 * 5 3 2 35 35 H 1.08999 * 109.87950 * 300.42704 * 9 8 6 36 36 H 1.08999 * 109.88095 * 61.57942 * 9 8 6 37 37 H 1.08994 * 110.73389 * 263.11023 * 10 9 8 38 38 H 1.08997 * 110.73070 * 139.79421 * 10 9 8 39 39 H 1.08997 * 110.37765 * 37.89190 * 12 8 6 40 40 H 1.09001 * 110.47452 * 275.59244 * 12 8 6 41 41 H 1.08997 * 109.57217 * 163.62376 * 13 11 10 42 42 H 1.09000 * 109.29228 * 43.86755 * 13 11 10 43 43 H 1.09001 * 109.47054 * 149.72955 * 15 14 13 44 44 H 1.08993 * 109.47338 * 29.72630 * 15 14 13 45 45 H 1.09001 * 109.46817 * 60.00400 * 16 15 14 46 46 H 1.08993 * 109.47300 * 300.00243 * 16 15 14 47 47 H 0.96997 * 120.00219 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.38957 * 103.41208 * 27 25 14 49 49 H 1.09000 * 109.38759 * 223.20787 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7103 7 8 3.8294 0.1979 1.0168 8 7 3.9814 2.4113 1.0052 9 6 5.2280 2.5208 1.7780 10 6 5.5731 4.0228 1.8828 11 6 4.2127 4.7063 1.6303 12 6 3.5503 3.7651 0.6061 13 6 4.4056 6.0957 1.0403 14 7 4.8268 7.0266 2.0871 15 6 5.4318 8.3022 1.6960 16 6 6.9487 8.1349 1.5864 17 6 7.5710 9.4469 1.1834 18 1 6.9470 10.3135 1.0220 19 6 8.9369 9.5408 1.0207 20 7 9.4800 10.6860 0.6695 21 14 10.0169 8.0439 1.3072 22 1 10.1670 7.2912 0.0359 23 1 11.3534 8.4816 1.7841 24 1 9.3887 7.1687 2.3293 25 6 4.6744 6.7574 3.3893 26 8 4.9967 7.6012 4.1986 27 6 4.1202 5.4535 3.8905 28 8 3.4510 4.7668 2.8284 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.8105 1.0323 -1.9814 33 1 1.2495 1.8861 -1.9300 34 1 2.7406 2.7278 -1.4437 35 1 5.0842 2.1032 2.7746 36 1 6.0304 1.9912 1.2644 37 1 6.2955 4.3071 1.1177 38 1 5.9475 4.2643 2.8775 39 1 2.4649 3.8491 0.6600 40 1 3.8985 3.9947 -0.4010 41 1 3.4678 6.4410 0.6051 42 1 5.1697 6.0544 0.2641 43 1 5.2031 9.0583 2.4471 44 1 5.0301 8.6145 0.7321 45 1 7.1775 7.3788 0.8352 46 1 7.3504 7.8226 2.5502 47 1 10.4409 10.7521 0.5546 48 1 4.9350 4.8341 4.2652 49 1 3.4127 5.6472 4.6968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269774635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:12 Heat of formation + Delta-G solvation = -137.026737 kcal Electronic energy + Delta-G solvation = -31313.143888 eV Core-core repulsion = 27048.406610 eV Total energy + Delta-G solvation = -4264.737278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48589 -40.18605 -38.71134 -37.74130 -36.29960 -35.69327 -33.16998 -32.70242 -31.44988 -30.41327 -30.09248 -27.76936 -27.23855 -26.42403 -24.95112 -24.71857 -22.83508 -21.88565 -20.60988 -20.00100 -18.57844 -18.15818 -17.70585 -17.18912 -16.87488 -16.47295 -16.23538 -16.03663 -15.81431 -15.41848 -15.18544 -14.76647 -14.36059 -14.22829 -14.08012 -13.82751 -13.61592 -13.48844 -13.40050 -13.12890 -13.03594 -12.94023 -12.74757 -12.70126 -12.33339 -12.15628 -11.76159 -11.67272 -11.64510 -11.53029 -11.36342 -11.04099 -10.66627 -10.43002 -10.37701 -10.13601 -9.92831 -9.84070 -9.42921 -9.21472 -9.03083 -8.62282 -8.40460 -6.12452 -4.11734 2.26156 2.30570 2.64717 2.94375 3.17409 3.22687 3.32449 3.35324 3.41594 3.86578 4.06017 4.15433 4.31241 4.37467 4.41990 4.49785 4.55348 4.77323 4.86148 4.87179 4.90204 4.94436 4.95554 5.01911 5.14726 5.20994 5.22052 5.25945 5.27345 5.28529 5.35826 5.46550 5.55834 5.62504 5.67333 5.83274 5.86917 6.23576 6.40820 6.53094 6.59446 6.61959 7.06945 7.08752 7.23968 7.58844 7.68704 7.82897 8.25305 8.42061 8.90660 9.48978 11.00650 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002810 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.203896 B = 9963.190260 C =10497.181891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.073 3.927 4 H 0.088 0.912 5 C -0.174 4.174 6 C 0.534 3.466 7 O -0.517 6.517 8 N -0.614 5.614 9 C 0.116 3.884 10 C -0.162 4.162 11 C 0.088 3.912 12 C 0.117 3.883 13 C 0.099 3.901 14 N -0.600 5.600 15 C 0.121 3.879 16 C -0.020 4.020 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.480 3.520 26 O -0.534 6.534 27 C 0.049 3.951 28 O -0.352 6.352 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.010 0.990 46 H 0.020 0.980 47 H 0.264 0.736 48 H 0.090 0.910 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.318 -18.628 -2.851 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.012 3.988 4 H 0.105 0.895 5 C -0.232 4.232 6 C 0.321 3.679 7 O -0.391 6.391 8 N -0.351 5.351 9 C -0.006 4.006 10 C -0.200 4.200 11 C 0.047 3.953 12 C -0.007 4.007 13 C -0.025 4.025 14 N -0.333 5.333 15 C 0.000 4.000 16 C -0.058 4.058 17 C -0.559 4.559 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.538 5.538 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.191 1.191 25 C 0.267 3.733 26 O -0.411 6.411 27 C -0.030 4.030 28 O -0.271 6.271 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.028 0.972 46 H 0.038 0.962 47 H 0.074 0.926 48 H 0.107 0.893 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.837 -19.033 -2.295 26.185 hybrid contribution 0.783 -0.247 0.064 0.824 sum -17.053 -19.280 -2.231 25.836 Atomic orbital electron populations 1.22901 0.80401 1.03350 1.00174 1.88047 1.19818 1.25058 1.94951 1.21880 0.93124 0.86930 0.96859 0.89455 1.22292 1.03614 1.02492 0.94795 1.20022 0.86056 0.82529 0.79291 1.90740 1.67049 1.28649 1.52668 1.48358 1.25998 1.05639 1.55069 1.21915 0.86004 0.96125 0.96546 1.23310 0.97298 0.94152 1.05239 1.22208 0.91975 0.94235 0.86919 1.22228 1.00995 0.80629 0.96823 1.21818 1.01792 0.87259 0.91621 1.47731 1.60380 1.20253 1.04914 1.21762 0.95249 0.82674 1.00279 1.19834 0.91218 0.98020 0.96757 1.20935 0.92691 0.95440 1.46860 0.90798 1.24980 0.97999 0.95816 0.94409 1.69899 1.11627 1.24641 1.47626 0.86783 0.80058 0.83590 0.78873 1.20292 1.21240 1.19141 1.20724 0.79623 0.89963 0.83038 1.90778 1.50412 1.46794 1.53164 1.22908 0.99534 0.89815 0.90782 1.87966 1.42104 1.76681 1.20332 0.93684 0.89062 0.93716 0.90817 0.90977 0.90637 0.90941 0.90661 0.88340 0.88878 0.88851 0.88516 0.90338 0.88744 0.89794 0.90971 0.97190 0.96162 0.92598 0.89274 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.75 9.90 -54.96 -0.54 -4.29 16 3 C 0.07 0.62 2.47 -27.89 -0.07 0.56 16 4 H 0.09 0.55 7.15 -51.93 -0.37 0.18 16 5 C -0.17 -1.07 9.43 37.16 0.35 -0.72 16 6 C 0.53 6.18 7.20 -10.99 -0.08 6.10 16 7 O -0.52 -8.28 16.86 -14.17 -0.24 -8.52 16 8 N -0.61 -5.88 3.33 -170.78 -0.57 -6.45 16 9 C 0.12 1.14 6.88 -2.95 -0.02 1.12 16 10 C -0.16 -1.55 5.78 -25.27 -0.15 -1.70 16 11 C 0.09 0.81 0.82 -89.79 -0.07 0.74 16 12 C 0.12 0.82 4.62 -2.90 -0.01 0.80 16 13 C 0.10 1.04 5.36 -4.58 -0.02 1.01 16 14 N -0.60 -9.07 2.82 -174.81 -0.49 -9.56 16 15 C 0.12 2.27 5.27 -4.04 -0.02 2.25 16 16 C -0.02 -0.46 4.36 -27.88 -0.12 -0.58 16 17 C -0.52 -14.37 9.66 -34.44 -0.33 -14.71 16 18 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 21 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 25 C 0.48 7.62 7.46 -11.61 -0.09 7.53 16 26 O -0.53 -10.90 16.33 5.56 0.09 -10.81 16 27 C 0.05 0.55 6.37 35.80 0.23 0.78 16 28 O -0.35 -3.70 10.43 -35.23 -0.37 -4.07 16 29 H 0.04 0.20 7.99 -51.93 -0.41 -0.22 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.33 7.99 -51.93 -0.41 -0.09 16 34 H 0.07 0.35 5.81 -51.93 -0.30 0.05 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.93 7.81 -51.93 -0.41 0.52 16 38 H 0.09 0.95 5.95 -51.93 -0.31 0.64 16 39 H 0.09 0.52 7.22 -51.93 -0.37 0.14 16 40 H 0.10 0.48 7.18 -51.93 -0.37 0.10 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.93 7.84 -51.93 -0.41 0.52 16 43 H 0.08 1.77 7.22 -51.93 -0.37 1.39 16 44 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 45 H 0.01 0.21 7.58 -51.93 -0.39 -0.18 16 46 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.09 0.91 6.59 -51.93 -0.34 0.57 16 49 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -37.23 388.61 -7.39 -44.63 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -7.82 Total: -3.32 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 0.59 Total: 6.34 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.29 Total: -42.46 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.06 Total: -27.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.23 -7.39 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269774635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.400 kcal (2) G-P(sol) polarization free energy of solvation -37.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds