Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 H 1.09002 * 109.47077 * 29.99848 * 3 2 1 5 5 C 1.53001 * 109.47406 * 270.00546 * 3 2 1 6 6 C 1.50691 * 109.47488 * 150.00147 * 3 2 1 7 7 O 1.21288 * 119.99855 * 9.62033 * 6 3 2 8 8 N 1.34780 * 120.00548 * 189.62304 * 6 3 2 9 9 C 1.47082 * 125.62999 * 175.24206 * 8 6 3 10 10 C 1.54474 * 107.29666 * 181.00516 * 9 8 6 11 11 C 1.54322 * 102.86659 * 21.45115 * 10 9 8 12 12 C 1.47579 * 125.62406 * 355.25917 * 8 6 3 13 13 C 1.52177 * 110.85704 * 207.16052 * 11 10 9 14 14 N 1.46280 * 109.88186 * 283.83519 * 13 11 10 15 15 C 1.46499 * 118.81276 * 162.76369 * 14 13 11 16 16 C 1.53009 * 109.46910 * 269.72409 * 15 14 13 17 17 C 1.50698 * 109.47118 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99755 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99896 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00070 * 359.72558 * 19 17 16 22 22 H 1.48501 * 109.46970 * 90.00036 * 21 19 17 23 23 H 1.48504 * 109.47136 * 210.00065 * 21 19 17 24 24 H 1.48501 * 109.47174 * 330.00170 * 21 19 17 25 25 C 1.33838 * 122.37217 * 342.48012 * 14 13 11 26 26 O 1.21281 * 118.62237 * 183.02721 * 25 14 13 27 27 C 1.50281 * 122.75537 * 3.00243 * 25 14 13 28 28 O 1.42098 * 110.69865 * 83.71387 * 11 10 9 29 29 H 1.08999 * 109.47195 * 59.99919 * 1 2 3 30 30 H 1.09003 * 109.46518 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46871 * 299.99239 * 1 2 3 32 32 H 1.09003 * 109.46897 * 304.95811 * 5 3 2 33 33 H 1.08996 * 109.47112 * 64.95123 * 5 3 2 34 34 H 1.08998 * 109.47263 * 184.95229 * 5 3 2 35 35 H 1.08999 * 109.87950 * 300.42704 * 9 8 6 36 36 H 1.08999 * 109.88095 * 61.57942 * 9 8 6 37 37 H 1.08994 * 110.73389 * 263.11023 * 10 9 8 38 38 H 1.08997 * 110.73070 * 139.79421 * 10 9 8 39 39 H 1.08997 * 110.37765 * 37.89190 * 12 8 6 40 40 H 1.09001 * 110.47452 * 275.59244 * 12 8 6 41 41 H 1.08997 * 109.57217 * 163.62376 * 13 11 10 42 42 H 1.09000 * 109.29228 * 43.86755 * 13 11 10 43 43 H 1.09001 * 109.47054 * 149.72955 * 15 14 13 44 44 H 1.08993 * 109.47338 * 29.72630 * 15 14 13 45 45 H 1.09001 * 109.46817 * 60.00400 * 16 15 14 46 46 H 1.08993 * 109.47300 * 300.00243 * 16 15 14 47 47 H 0.96997 * 120.00219 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.38957 * 103.41208 * 27 25 14 49 49 H 1.09000 * 109.38759 * 223.20787 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7103 7 8 3.8294 0.1979 1.0168 8 7 3.9814 2.4113 1.0052 9 6 5.2280 2.5208 1.7780 10 6 5.5731 4.0228 1.8828 11 6 4.2127 4.7063 1.6303 12 6 3.5503 3.7651 0.6061 13 6 4.4056 6.0957 1.0403 14 7 4.8268 7.0266 2.0871 15 6 5.4318 8.3022 1.6960 16 6 6.9487 8.1349 1.5864 17 6 7.5710 9.4469 1.1834 18 1 6.9470 10.3135 1.0220 19 6 8.9369 9.5408 1.0207 20 7 9.4800 10.6860 0.6695 21 14 10.0169 8.0439 1.3072 22 1 10.1670 7.2912 0.0359 23 1 11.3534 8.4816 1.7841 24 1 9.3887 7.1687 2.3293 25 6 4.6744 6.7574 3.3893 26 8 4.9967 7.6012 4.1986 27 6 4.1202 5.4535 3.8905 28 8 3.4510 4.7668 2.8284 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 2.8105 1.0323 -1.9814 33 1 1.2495 1.8861 -1.9300 34 1 2.7406 2.7278 -1.4437 35 1 5.0842 2.1032 2.7746 36 1 6.0304 1.9912 1.2644 37 1 6.2955 4.3071 1.1177 38 1 5.9475 4.2643 2.8775 39 1 2.4649 3.8491 0.6600 40 1 3.8985 3.9947 -0.4010 41 1 3.4678 6.4410 0.6051 42 1 5.1697 6.0544 0.2641 43 1 5.2031 9.0583 2.4471 44 1 5.0301 8.6145 0.7321 45 1 7.1775 7.3788 0.8352 46 1 7.3504 7.8226 2.5502 47 1 10.4409 10.7521 0.5546 48 1 4.9350 4.8341 4.2652 49 1 3.4127 5.6472 4.6968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269774635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -164.845732 kcal Electronic energy + Delta-G solvation = -31314.350210 eV Core-core repulsion = 27048.406610 eV Total energy + Delta-G solvation = -4265.943601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.38071 -41.09358 -39.67904 -38.49545 -37.17431 -37.03112 -35.07350 -33.46908 -32.64375 -31.77014 -30.79915 -28.92320 -27.71834 -27.32854 -26.30093 -25.59720 -23.58787 -23.14676 -22.02713 -20.72260 -19.62927 -19.11597 -18.94893 -18.49671 -17.71844 -17.49576 -17.14722 -16.95934 -16.74129 -16.34079 -16.08123 -15.96166 -15.74245 -15.25631 -14.93608 -14.79730 -14.67187 -14.61525 -14.52968 -14.16566 -14.11398 -13.90128 -13.57930 -13.48917 -13.36083 -12.99258 -12.90087 -12.71910 -12.58416 -12.47941 -12.31701 -12.18700 -12.08244 -11.95782 -11.73013 -11.54428 -11.33338 -11.07584 -10.78778 -10.58270 -10.41363 -9.79863 -9.70368 -8.31586 -6.36122 1.31018 1.36391 1.45010 1.46543 1.47012 1.59901 1.85038 2.33123 2.36303 2.84038 3.03821 3.13255 3.30801 3.37539 3.59264 3.62979 3.90077 4.01952 4.04986 4.08658 4.13070 4.28249 4.37672 4.40730 4.46364 4.48366 4.52252 4.57374 4.58758 4.65782 4.70647 4.74459 4.78874 4.83327 4.85596 4.88919 4.90647 5.03420 5.12940 5.23621 5.33405 5.46171 5.63122 5.77934 6.06734 6.22626 6.34965 6.40621 6.71010 7.03239 7.04601 7.28538 8.84789 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002810 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.203896 B = 9963.190260 C =10497.181891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.074 3.926 4 H 0.114 0.886 5 C -0.169 4.169 6 C 0.526 3.474 7 O -0.575 6.575 8 N -0.610 5.610 9 C 0.116 3.884 10 C -0.160 4.160 11 C 0.088 3.912 12 C 0.117 3.883 13 C 0.092 3.908 14 N -0.598 5.598 15 C 0.133 3.867 16 C -0.010 4.010 17 C -0.529 4.529 18 H 0.038 0.962 19 C 0.008 3.992 20 N -0.947 5.947 21 Si 0.948 3.052 22 H -0.254 1.254 23 H -0.288 1.288 24 H -0.258 1.258 25 C 0.473 3.527 26 O -0.590 6.590 27 C 0.061 3.939 28 O -0.350 6.350 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.033 0.967 46 H -0.001 1.001 47 H 0.267 0.733 48 H 0.103 0.897 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.954 -20.366 -4.252 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.013 3.987 4 H 0.132 0.868 5 C -0.227 4.227 6 C 0.316 3.684 7 O -0.454 6.454 8 N -0.345 5.345 9 C -0.006 4.006 10 C -0.198 4.198 11 C 0.047 3.953 12 C -0.005 4.005 13 C -0.030 4.030 14 N -0.329 5.329 15 C 0.011 3.989 16 C -0.049 4.049 17 C -0.568 4.568 18 H 0.056 0.944 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.772 3.228 22 H -0.179 1.179 23 H -0.214 1.214 24 H -0.182 1.182 25 C 0.262 3.738 26 O -0.472 6.472 27 C -0.018 4.018 28 O -0.268 6.268 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.076 0.924 48 H 0.121 0.879 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.521 -20.775 -3.737 28.751 hybrid contribution 1.241 0.376 0.499 1.390 sum -18.280 -20.400 -3.238 27.582 Atomic orbital electron populations 1.23093 0.78515 1.04161 1.01566 1.88004 1.22012 1.26522 1.95212 1.22042 0.91590 0.86926 0.98104 0.86821 1.22298 1.04776 1.02634 0.92959 1.20743 0.86952 0.82028 0.78708 1.90707 1.68643 1.30783 1.55241 1.48400 1.25500 1.06357 1.54242 1.21854 0.86333 0.96295 0.96124 1.23294 0.97764 0.93755 1.04993 1.22309 0.92011 0.94009 0.86958 1.22524 1.02480 0.78246 0.97264 1.22195 1.03603 0.86693 0.90539 1.47724 1.59536 1.19696 1.05978 1.21314 0.93135 0.84145 1.00352 1.19682 0.93585 0.95776 0.95813 1.21290 0.92766 0.96531 1.46194 0.94401 1.25941 0.99727 0.99066 0.94218 1.70051 1.12141 1.27201 1.49369 0.85692 0.77567 0.79738 0.79812 1.17868 1.21439 1.18218 1.21584 0.78673 0.90858 0.82718 1.90754 1.52906 1.48853 1.54666 1.22839 1.00313 0.87430 0.91204 1.87991 1.42154 1.76099 1.20560 0.91626 0.88760 0.92854 0.92688 0.88848 0.88732 0.92007 0.91119 0.87771 0.89744 0.86369 0.85376 0.87341 0.87404 0.92967 0.88907 0.94912 0.98248 0.92444 0.87945 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.69 9.90 -130.12 -1.29 -8.98 16 3 C 0.07 1.06 2.47 29.85 0.07 1.13 16 4 H 0.11 0.96 7.15 -2.39 -0.02 0.94 16 5 C -0.17 -1.47 9.43 71.98 0.68 -0.80 16 6 C 0.53 11.32 7.20 87.65 0.63 11.95 16 7 O -0.58 -18.54 16.86 15.81 0.27 -18.28 16 8 N -0.61 -10.00 3.33 -812.63 -2.71 -12.71 16 9 C 0.12 2.08 6.88 86.77 0.60 2.68 16 10 C -0.16 -2.62 5.78 31.54 0.18 -2.44 16 11 C 0.09 1.28 0.82 -10.26 -0.01 1.27 16 12 C 0.12 1.08 4.62 86.53 0.40 1.48 16 13 C 0.09 1.53 5.36 86.15 0.46 1.99 16 14 N -0.60 -16.80 2.82 -825.90 -2.33 -19.13 16 15 C 0.13 4.89 5.27 86.38 0.46 5.35 16 16 C -0.01 -0.46 4.36 29.85 0.13 -0.33 16 17 C -0.53 -29.68 9.66 25.60 0.25 -29.43 16 18 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 19 C 0.01 0.45 5.47 84.65 0.46 0.91 16 20 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 21 Si 0.95 43.54 27.47 68.60 1.88 45.43 16 22 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 24 H -0.26 -11.38 6.54 99.48 0.65 -10.73 16 25 C 0.47 14.43 7.46 87.67 0.65 15.09 16 26 O -0.59 -24.41 16.33 -3.03 -0.05 -24.46 16 27 C 0.06 1.25 6.37 71.10 0.45 1.70 16 28 O -0.35 -6.10 10.43 -148.98 -1.55 -7.66 16 29 H 0.07 0.37 7.99 -2.39 -0.02 0.35 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.43 8.09 -2.39 -0.02 0.41 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.43 7.99 -2.39 -0.02 0.41 16 34 H 0.09 0.42 5.81 -2.39 -0.01 0.41 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.61 7.81 -2.39 -0.02 1.59 16 38 H 0.08 1.55 5.95 -2.39 -0.01 1.54 16 39 H 0.12 0.60 7.22 -2.39 -0.02 0.58 16 40 H 0.13 0.48 7.18 -2.39 -0.02 0.46 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.58 7.84 -2.39 -0.02 1.56 16 43 H 0.05 2.26 7.22 -2.39 -0.02 2.24 16 44 H 0.09 3.01 8.04 -2.39 -0.02 2.99 16 45 H 0.03 1.32 7.58 -2.39 -0.02 1.30 16 46 H 0.00 -0.04 7.19 -2.39 -0.02 -0.06 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.10 1.88 6.59 -2.39 -0.02 1.86 16 49 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -86.09 388.61 2.05 -84.04 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.89 Total: 8.00 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.65 Total: 12.00 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -4.74 Total: -90.09 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -2.63 Total: -59.38 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.43 kcal Total: -86.09 2.05 -84.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269774635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.808 kcal (2) G-P(sol) polarization free energy of solvation -86.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds