Wall clock time and date at job start Sat Apr 11 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99930 * 2 1 4 4 H 1.08999 * 109.46824 * 330.00373 * 3 2 1 5 5 C 1.53001 * 109.47185 * 90.00305 * 3 2 1 6 6 C 1.50703 * 109.47018 * 209.99947 * 3 2 1 7 7 O 1.21284 * 120.00166 * 350.77062 * 6 3 2 8 8 N 1.34774 * 119.99859 * 170.76354 * 6 3 2 9 9 C 1.47093 * 125.62876 * 355.05278 * 8 6 3 10 10 C 1.54465 * 107.29871 * 180.96258 * 9 8 6 11 11 C 1.54331 * 102.86935 * 21.45381 * 10 9 8 12 12 C 1.47585 * 125.63074 * 175.02815 * 8 6 3 13 13 C 1.52172 * 110.85582 * 207.16027 * 11 10 9 14 14 N 1.46276 * 109.88256 * 283.82967 * 13 11 10 15 15 C 1.46496 * 118.81505 * 162.76681 * 14 13 11 16 16 C 1.53004 * 109.47210 * 269.72987 * 15 14 13 17 17 C 1.50696 * 109.47224 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00130 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00333 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99947 * 359.72641 * 19 17 16 22 22 H 1.48500 * 109.47456 * 89.99612 * 21 19 17 23 23 H 1.48502 * 109.47326 * 210.00095 * 21 19 17 24 24 H 1.48503 * 109.47086 * 329.99907 * 21 19 17 25 25 C 1.33835 * 122.37129 * 342.48767 * 14 13 11 26 26 O 1.21279 * 118.62116 * 183.02446 * 25 14 13 27 27 C 1.50284 * 122.76046 * 2.99850 * 25 14 13 28 28 O 1.42099 * 110.69517 * 83.70752 * 11 10 9 29 29 H 1.09003 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47236 * 299.99513 * 1 2 3 31 31 H 1.08997 * 109.47523 * 59.99938 * 1 2 3 32 32 H 1.09004 * 109.46930 * 65.34400 * 5 3 2 33 33 H 1.08994 * 109.47529 * 185.35134 * 5 3 2 34 34 H 1.09007 * 109.46986 * 305.34824 * 5 3 2 35 35 H 1.08995 * 109.87873 * 300.39500 * 9 8 6 36 36 H 1.09003 * 109.87775 * 61.39435 * 9 8 6 37 37 H 1.08998 * 110.73872 * 263.11431 * 10 9 8 38 38 H 1.08996 * 110.73207 * 139.79697 * 10 9 8 39 39 H 1.08994 * 110.37556 * 37.92931 * 12 8 6 40 40 H 1.09004 * 110.37274 * 275.58214 * 12 8 6 41 41 H 1.09007 * 109.56840 * 163.62545 * 13 11 10 42 42 H 1.08998 * 109.29868 * 43.87359 * 13 11 10 43 43 H 1.08998 * 109.47343 * 149.73440 * 15 14 13 44 44 H 1.08997 * 109.47374 * 29.73174 * 15 14 13 45 45 H 1.08998 * 109.46597 * 59.99996 * 16 15 14 46 46 H 1.08997 * 109.47105 * 300.00352 * 16 15 14 47 47 H 0.97004 * 120.00249 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.38855 * 103.40946 * 27 25 14 49 49 H 1.09002 * 109.39134 * 223.20714 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.8260 0.1983 -1.0232 8 7 3.9850 2.4110 -0.9983 9 6 3.4649 3.7679 -0.7708 10 6 4.5362 4.7607 -1.2734 11 6 5.3654 3.9044 -2.2538 12 6 5.3317 2.5129 -1.5934 13 6 6.7933 4.4214 -2.3505 14 7 6.8298 5.6314 -3.1715 15 6 8.0038 6.5040 -3.0914 16 6 7.7848 7.5548 -2.0011 17 6 8.9927 8.4520 -1.9182 18 1 9.8328 8.2888 -2.5769 19 6 9.0258 9.4806 -1.0006 20 7 10.0797 10.2639 -0.9286 21 14 7.5702 9.7668 0.1345 22 1 7.7524 8.9806 1.3811 23 1 7.4795 11.2108 0.4688 24 1 6.3213 9.3364 -0.5439 25 6 5.8317 5.9673 -3.9975 26 8 5.9570 6.9563 -4.6881 27 6 4.5624 5.1700 -4.1055 28 8 4.7513 3.8715 -3.5348 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9558 1.1329 1.9279 33 1 2.5717 2.8023 1.4441 34 1 1.2732 1.7109 1.9833 35 1 2.5389 3.9082 -1.3283 36 1 3.2838 3.9219 0.2930 37 1 5.1558 5.1106 -0.4477 38 1 4.0719 5.5998 -1.7915 39 1 5.4757 1.7340 -2.3421 40 1 6.0952 2.4419 -0.8188 41 1 7.4280 3.6587 -2.8018 42 1 7.1617 4.6513 -1.3507 43 1 8.1534 7.0008 -4.0499 44 1 8.8838 5.9078 -2.8499 45 1 7.6352 7.0580 -1.0425 46 1 6.9048 8.1509 -2.2425 47 1 10.1032 10.9873 -0.2828 48 1 3.7640 5.6868 -3.5728 49 1 4.2885 5.0661 -5.1554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269774636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:17 Heat of formation + Delta-G solvation = -136.210448 kcal Electronic energy + Delta-G solvation = -31224.527560 eV Core-core repulsion = 26959.825679 eV Total energy + Delta-G solvation = -4264.701881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45219 -40.18237 -38.70609 -37.71725 -36.32471 -35.67892 -33.19016 -32.64589 -31.28358 -30.46906 -30.17330 -27.74908 -27.25849 -26.57382 -24.72692 -24.55097 -23.10112 -21.84854 -20.56242 -19.99644 -18.55906 -18.18224 -17.69440 -17.15850 -16.88517 -16.42443 -16.14140 -15.95564 -15.72884 -15.62778 -15.23479 -14.73575 -14.37713 -14.25571 -14.14551 -13.90550 -13.58474 -13.47596 -13.19676 -13.09699 -12.98173 -12.92535 -12.78605 -12.67358 -12.33471 -12.21412 -11.83879 -11.72162 -11.63300 -11.49439 -11.29267 -11.03379 -10.65151 -10.42985 -10.36294 -10.12894 -9.92834 -9.84608 -9.41794 -9.19786 -9.02386 -8.62182 -8.37602 -6.11999 -4.11118 2.26409 2.28207 2.67375 2.97868 3.21511 3.24510 3.30838 3.33534 3.44337 3.92261 4.01884 4.18259 4.27774 4.37086 4.40060 4.49770 4.55044 4.70248 4.84077 4.84814 4.91910 4.92571 4.97482 5.14706 5.20312 5.21501 5.23789 5.26001 5.27132 5.31450 5.35909 5.40765 5.51105 5.63150 5.65441 5.79864 5.89324 6.25788 6.44238 6.54933 6.57793 6.66995 7.08466 7.09929 7.24643 7.61202 7.69618 7.82612 8.27616 8.42979 8.91506 9.49249 11.01189 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.002848 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.594046 B = 9830.451892 C =10745.354034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.173 4.173 6 C 0.534 3.466 7 O -0.516 6.516 8 N -0.614 5.614 9 C 0.101 3.899 10 C -0.162 4.162 11 C 0.088 3.912 12 C 0.129 3.871 13 C 0.099 3.901 14 N -0.599 5.599 15 C 0.120 3.880 16 C -0.019 4.019 17 C -0.520 4.520 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.480 3.520 26 O -0.535 6.535 27 C 0.048 3.952 28 O -0.351 6.351 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.010 0.990 46 H 0.020 0.980 47 H 0.264 0.736 48 H 0.088 0.912 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -17.702 3.511 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.230 4.230 6 C 0.321 3.679 7 O -0.390 6.390 8 N -0.351 5.351 9 C -0.022 4.022 10 C -0.200 4.200 11 C 0.047 3.953 12 C 0.006 3.994 13 C -0.025 4.025 14 N -0.332 5.332 15 C 0.000 4.000 16 C -0.058 4.058 17 C -0.559 4.559 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.192 1.192 25 C 0.266 3.734 26 O -0.413 6.413 27 C -0.031 4.031 28 O -0.269 6.269 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.028 0.972 46 H 0.038 0.962 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.294 -18.052 2.999 26.592 hybrid contribution -0.865 0.911 0.859 1.522 sum -20.159 -17.142 3.858 26.742 Atomic orbital electron populations 1.22898 0.80442 1.03373 1.00105 1.88049 1.19776 1.25061 1.94943 1.21862 0.93146 0.86855 0.96801 0.89732 1.22274 1.03743 1.02287 0.94710 1.19998 0.86152 0.82600 0.79129 1.90742 1.67491 1.28753 1.52020 1.48341 1.18101 1.05630 1.63033 1.22193 0.97674 0.81097 1.01247 1.23282 0.98124 0.98167 1.00391 1.22221 0.92393 0.96171 0.84518 1.21990 0.84534 0.95331 0.97519 1.21811 0.95362 0.87635 0.97687 1.47736 1.20320 1.24023 1.41145 1.21762 0.84383 0.91682 1.02189 1.19828 0.98434 0.94265 0.93238 1.20944 1.01845 1.12936 1.20161 0.90788 1.24984 0.95727 0.95495 0.97043 1.69900 1.28973 1.18625 1.36305 0.86772 0.83839 0.77505 0.81119 1.20309 1.21265 1.19169 1.20725 0.85872 0.86391 0.80385 1.90773 1.79948 1.27368 1.43189 1.22905 0.95015 0.83505 1.01680 1.88015 1.80751 1.27073 1.31086 0.89013 0.93748 0.93759 0.90973 0.90573 0.90974 0.90937 0.90390 0.88240 0.88864 0.88508 0.88852 0.90254 0.88744 0.89797 0.90959 0.97204 0.96180 0.92612 0.89404 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.74 9.90 -54.97 -0.54 -4.29 16 3 C 0.07 0.64 2.53 -27.88 -0.07 0.57 16 4 H 0.08 0.53 7.60 -51.93 -0.39 0.13 16 5 C -0.17 -1.10 9.40 37.16 0.35 -0.75 16 6 C 0.53 6.15 7.17 -10.99 -0.08 6.07 16 7 O -0.52 -8.18 16.77 -14.18 -0.24 -8.42 16 8 N -0.61 -5.85 3.33 -170.78 -0.57 -6.42 16 9 C 0.10 0.71 6.18 -2.95 -0.02 0.70 16 10 C -0.16 -1.41 5.78 -25.27 -0.15 -1.56 16 11 C 0.09 0.89 0.82 -89.79 -0.07 0.81 16 12 C 0.13 1.23 6.10 -2.89 -0.02 1.21 16 13 C 0.10 1.14 5.36 -4.59 -0.02 1.12 16 14 N -0.60 -9.42 2.82 -174.82 -0.49 -9.91 16 15 C 0.12 2.32 5.27 -4.04 -0.02 2.30 16 16 C -0.02 -0.45 4.36 -27.88 -0.12 -0.57 16 17 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 21 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 25 C 0.48 7.78 7.46 -11.61 -0.09 7.69 16 26 O -0.54 -11.05 16.33 5.56 0.09 -10.96 16 27 C 0.05 0.56 6.37 35.80 0.23 0.78 16 28 O -0.35 -4.00 10.43 -35.23 -0.37 -4.37 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.20 7.78 -51.93 -0.40 -0.21 16 31 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.38 5.69 -51.93 -0.30 0.08 16 34 H 0.07 0.36 7.78 -51.93 -0.40 -0.04 16 35 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.08 0.41 5.91 -51.93 -0.31 0.11 16 37 H 0.10 0.86 7.81 -51.93 -0.41 0.45 16 38 H 0.09 0.85 5.95 -51.93 -0.31 0.54 16 39 H 0.10 1.05 8.01 -51.93 -0.42 0.63 16 40 H 0.09 0.75 8.01 -51.93 -0.42 0.33 16 41 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.09 1.01 7.84 -51.93 -0.41 0.60 16 43 H 0.08 1.80 7.22 -51.93 -0.37 1.43 16 44 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 45 H 0.01 0.21 7.58 -51.93 -0.39 -0.18 16 46 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.09 0.86 6.59 -51.93 -0.34 0.52 16 49 H 0.13 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -37.15 388.59 -7.36 -44.51 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.78 Total: -2.72 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 0.58 Total: 6.75 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.29 Total: -42.82 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.06 Total: -28.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.15 -7.36 -44.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269774636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.703 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds