Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99930 * 2 1 4 4 H 1.08999 * 109.46824 * 330.00373 * 3 2 1 5 5 C 1.53001 * 109.47185 * 90.00305 * 3 2 1 6 6 C 1.50703 * 109.47018 * 209.99947 * 3 2 1 7 7 O 1.21284 * 120.00166 * 350.77062 * 6 3 2 8 8 N 1.34774 * 119.99859 * 170.76354 * 6 3 2 9 9 C 1.47093 * 125.62876 * 355.05278 * 8 6 3 10 10 C 1.54465 * 107.29871 * 180.96258 * 9 8 6 11 11 C 1.54331 * 102.86935 * 21.45381 * 10 9 8 12 12 C 1.47585 * 125.63074 * 175.02815 * 8 6 3 13 13 C 1.52172 * 110.85582 * 207.16027 * 11 10 9 14 14 N 1.46276 * 109.88256 * 283.82967 * 13 11 10 15 15 C 1.46496 * 118.81505 * 162.76681 * 14 13 11 16 16 C 1.53004 * 109.47210 * 269.72987 * 15 14 13 17 17 C 1.50696 * 109.47224 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00106 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00130 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00333 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99947 * 359.72641 * 19 17 16 22 22 H 1.48500 * 109.47456 * 89.99612 * 21 19 17 23 23 H 1.48502 * 109.47326 * 210.00095 * 21 19 17 24 24 H 1.48503 * 109.47086 * 329.99907 * 21 19 17 25 25 C 1.33835 * 122.37129 * 342.48767 * 14 13 11 26 26 O 1.21279 * 118.62116 * 183.02446 * 25 14 13 27 27 C 1.50284 * 122.76046 * 2.99850 * 25 14 13 28 28 O 1.42099 * 110.69517 * 83.70752 * 11 10 9 29 29 H 1.09003 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47236 * 299.99513 * 1 2 3 31 31 H 1.08997 * 109.47523 * 59.99938 * 1 2 3 32 32 H 1.09004 * 109.46930 * 65.34400 * 5 3 2 33 33 H 1.08994 * 109.47529 * 185.35134 * 5 3 2 34 34 H 1.09007 * 109.46986 * 305.34824 * 5 3 2 35 35 H 1.08995 * 109.87873 * 300.39500 * 9 8 6 36 36 H 1.09003 * 109.87775 * 61.39435 * 9 8 6 37 37 H 1.08998 * 110.73872 * 263.11431 * 10 9 8 38 38 H 1.08996 * 110.73207 * 139.79697 * 10 9 8 39 39 H 1.08994 * 110.37556 * 37.92931 * 12 8 6 40 40 H 1.09004 * 110.37274 * 275.58214 * 12 8 6 41 41 H 1.09007 * 109.56840 * 163.62545 * 13 11 10 42 42 H 1.08998 * 109.29868 * 43.87359 * 13 11 10 43 43 H 1.08998 * 109.47343 * 149.73440 * 15 14 13 44 44 H 1.08997 * 109.47374 * 29.73174 * 15 14 13 45 45 H 1.08998 * 109.46597 * 59.99996 * 16 15 14 46 46 H 1.08997 * 109.47105 * 300.00352 * 16 15 14 47 47 H 0.97004 * 120.00249 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.38855 * 103.40946 * 27 25 14 49 49 H 1.09002 * 109.39134 * 223.20714 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.8260 0.1983 -1.0232 8 7 3.9850 2.4110 -0.9983 9 6 3.4649 3.7679 -0.7708 10 6 4.5362 4.7607 -1.2734 11 6 5.3654 3.9044 -2.2538 12 6 5.3317 2.5129 -1.5934 13 6 6.7933 4.4214 -2.3505 14 7 6.8298 5.6314 -3.1715 15 6 8.0038 6.5040 -3.0914 16 6 7.7848 7.5548 -2.0011 17 6 8.9927 8.4520 -1.9182 18 1 9.8328 8.2888 -2.5769 19 6 9.0258 9.4806 -1.0006 20 7 10.0797 10.2639 -0.9286 21 14 7.5702 9.7668 0.1345 22 1 7.7524 8.9806 1.3811 23 1 7.4795 11.2108 0.4688 24 1 6.3213 9.3364 -0.5439 25 6 5.8317 5.9673 -3.9975 26 8 5.9570 6.9563 -4.6881 27 6 4.5624 5.1700 -4.1055 28 8 4.7513 3.8715 -3.5348 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9558 1.1329 1.9279 33 1 2.5717 2.8023 1.4441 34 1 1.2732 1.7109 1.9833 35 1 2.5389 3.9082 -1.3283 36 1 3.2838 3.9219 0.2930 37 1 5.1558 5.1106 -0.4477 38 1 4.0719 5.5998 -1.7915 39 1 5.4757 1.7340 -2.3421 40 1 6.0952 2.4419 -0.8188 41 1 7.4280 3.6587 -2.8018 42 1 7.1617 4.6513 -1.3507 43 1 8.1534 7.0008 -4.0499 44 1 8.8838 5.9078 -2.8499 45 1 7.6352 7.0580 -1.0425 46 1 6.9048 8.1509 -2.2425 47 1 10.1032 10.9873 -0.2828 48 1 3.7640 5.6868 -3.5728 49 1 4.2885 5.0661 -5.1554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269774636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -163.840123 kcal Electronic energy + Delta-G solvation = -31225.725673 eV Core-core repulsion = 26959.825679 eV Total energy + Delta-G solvation = -4265.899994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.38228 -41.09206 -39.68916 -38.48225 -37.20097 -37.06035 -35.08181 -33.50747 -32.51231 -31.65578 -30.95878 -28.92840 -27.72838 -27.52724 -26.31445 -25.27614 -23.71843 -23.23650 -21.97396 -20.72013 -19.63954 -19.11727 -18.97485 -18.48505 -17.75550 -17.48941 -17.08006 -16.88743 -16.68733 -16.36454 -16.17372 -16.00094 -15.75039 -15.25777 -15.00291 -14.79813 -14.71386 -14.63066 -14.54478 -14.17525 -14.08286 -13.75433 -13.59400 -13.57126 -13.31667 -13.07595 -12.88550 -12.75634 -12.57217 -12.46771 -12.31596 -12.17907 -12.02519 -11.93964 -11.72523 -11.54926 -11.32616 -11.07743 -10.78064 -10.58651 -10.42709 -9.75877 -9.73842 -8.30530 -6.36163 1.32960 1.38423 1.44326 1.47952 1.49221 1.57418 1.83242 2.35248 2.37398 2.88598 3.04530 3.13290 3.30404 3.37079 3.55572 3.65094 3.88955 4.00483 4.04173 4.07832 4.18093 4.26466 4.33831 4.40875 4.45593 4.47812 4.50254 4.51029 4.55256 4.61260 4.70057 4.75790 4.80396 4.81231 4.86627 4.87453 4.96848 5.00312 5.13125 5.23347 5.32146 5.44443 5.62778 5.79407 6.05758 6.22744 6.36790 6.38891 6.70682 7.02255 7.04304 7.28487 8.86006 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.002848 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.594046 B = 9830.451892 C =10745.354034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.075 3.925 4 H 0.112 0.888 5 C -0.167 4.167 6 C 0.527 3.473 7 O -0.573 6.573 8 N -0.611 5.611 9 C 0.100 3.900 10 C -0.162 4.162 11 C 0.091 3.909 12 C 0.128 3.872 13 C 0.093 3.907 14 N -0.598 5.598 15 C 0.131 3.869 16 C -0.007 4.007 17 C -0.533 4.533 18 H 0.033 0.967 19 C 0.004 3.996 20 N -0.949 5.949 21 Si 0.954 3.046 22 H -0.254 1.254 23 H -0.288 1.288 24 H -0.252 1.252 25 C 0.473 3.527 26 O -0.589 6.589 27 C 0.061 3.939 28 O -0.356 6.356 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.004 0.996 47 H 0.267 0.733 48 H 0.116 0.884 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.962 -18.274 5.637 29.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.014 3.986 4 H 0.130 0.870 5 C -0.224 4.224 6 C 0.316 3.684 7 O -0.452 6.452 8 N -0.346 5.346 9 C -0.021 4.021 10 C -0.200 4.200 11 C 0.050 3.950 12 C 0.006 3.994 13 C -0.030 4.030 14 N -0.329 5.329 15 C 0.009 3.991 16 C -0.046 4.046 17 C -0.572 4.572 18 H 0.051 0.949 19 C -0.193 4.193 20 N -0.589 5.589 21 Si 0.777 3.223 22 H -0.178 1.178 23 H -0.214 1.214 24 H -0.176 1.176 25 C 0.261 3.739 26 O -0.470 6.470 27 C -0.018 4.018 28 O -0.274 6.274 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.052 0.948 46 H 0.023 0.977 47 H 0.076 0.924 48 H 0.133 0.867 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.577 -18.647 5.141 29.730 hybrid contribution 0.253 1.077 0.112 1.112 sum -22.324 -17.570 5.253 28.891 Atomic orbital electron populations 1.23092 0.78546 1.04196 1.01512 1.88006 1.21988 1.26497 1.95199 1.22012 0.91760 0.86873 0.97909 0.87039 1.22263 1.04245 1.02760 0.93148 1.20678 0.87030 0.82127 0.78586 1.90710 1.69082 1.30835 1.54554 1.48397 1.17888 1.06321 1.61951 1.22395 0.97555 0.78950 1.03203 1.23321 0.98381 0.98209 1.00054 1.22219 0.91599 0.96772 0.84441 1.21993 0.85432 0.94346 0.97672 1.22109 0.97036 0.86077 0.97762 1.47720 1.19042 1.24534 1.41613 1.21322 0.86605 0.91777 0.99395 1.19653 0.95274 0.94197 0.95426 1.21287 1.02482 1.14161 1.19227 0.94851 1.26027 0.99056 0.95078 0.99115 1.70066 1.31618 1.19592 1.37662 0.85609 0.79858 0.77553 0.79302 1.17794 1.21399 1.17627 1.21652 0.86959 0.86031 0.79216 1.90751 1.81100 1.29922 1.45242 1.22901 0.92662 0.83096 1.03136 1.88035 1.80719 1.26815 1.31853 0.88688 0.91749 0.92819 0.92814 0.88679 0.89232 0.89218 0.87747 0.87586 0.88843 0.90269 0.87181 0.89115 0.87310 0.92948 0.89591 0.94804 0.97722 0.92422 0.86683 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.70 9.90 -130.11 -1.29 -8.99 16 3 C 0.08 1.09 2.53 29.85 0.08 1.16 16 4 H 0.11 0.95 7.60 -2.39 -0.02 0.93 16 5 C -0.17 -1.58 9.40 71.98 0.68 -0.90 16 6 C 0.53 11.28 7.17 87.66 0.63 11.90 16 7 O -0.57 -18.27 16.77 15.83 0.27 -18.00 16 8 N -0.61 -9.91 3.33 -812.60 -2.71 -12.62 16 9 C 0.10 0.97 6.18 86.76 0.54 1.51 16 10 C -0.16 -2.15 5.78 31.54 0.18 -1.97 16 11 C 0.09 1.56 0.82 -10.26 -0.01 1.55 16 12 C 0.13 2.17 6.10 86.53 0.53 2.70 16 13 C 0.09 1.91 5.36 86.15 0.46 2.37 16 14 N -0.60 -17.98 2.82 -825.92 -2.33 -20.31 16 15 C 0.13 5.07 5.27 86.38 0.46 5.53 16 16 C -0.01 -0.32 4.36 29.85 0.13 -0.19 16 17 C -0.53 -30.23 9.66 25.60 0.25 -29.99 16 18 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 19 C 0.00 0.25 5.47 84.65 0.46 0.71 16 20 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 21 Si 0.95 42.70 27.47 68.60 1.88 44.58 16 22 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 25 C 0.47 14.80 7.46 87.67 0.65 15.45 16 26 O -0.59 -24.52 16.33 -3.02 -0.05 -24.57 16 27 C 0.06 1.25 6.37 71.11 0.45 1.70 16 28 O -0.36 -7.16 10.43 -148.98 -1.55 -8.71 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.37 7.78 -2.39 -0.02 0.35 16 31 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.50 5.69 -2.39 -0.01 0.48 16 34 H 0.09 0.55 7.78 -2.38 -0.02 0.53 16 35 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 36 H 0.10 0.52 5.91 -2.39 -0.01 0.51 16 37 H 0.11 1.32 7.81 -2.39 -0.02 1.30 16 38 H 0.09 1.29 5.95 -2.39 -0.01 1.27 16 39 H 0.08 1.65 8.01 -2.39 -0.02 1.63 16 40 H 0.11 1.49 8.01 -2.39 -0.02 1.47 16 41 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.11 1.96 7.84 -2.39 -0.02 1.94 16 43 H 0.05 2.35 7.22 -2.39 -0.02 2.33 16 44 H 0.09 3.04 8.04 -2.39 -0.02 3.02 16 45 H 0.03 1.37 7.58 -2.39 -0.02 1.35 16 46 H 0.00 0.22 7.19 -2.39 -0.02 0.20 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.12 1.81 6.59 -2.39 -0.02 1.79 16 49 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -85.59 388.59 2.12 -83.47 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.89 Total: 10.75 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.71 Total: 12.99 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.74 Total: -91.52 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -2.63 Total: -60.28 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Total: -85.59 2.12 -83.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269774636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.367 kcal (2) G-P(sol) polarization free energy of solvation -85.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds