Wall clock time and date at job start Sat Apr 11 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47233 * 2 1 4 4 O 1.42892 * 109.47401 * 239.99239 * 2 1 3 5 5 C 1.53002 * 109.46714 * 119.99045 * 2 1 3 6 6 C 1.50698 * 109.47095 * 185.00105 * 5 2 1 7 7 O 1.21280 * 119.99899 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99888 * 180.02562 * 6 5 2 9 9 C 1.47084 * 125.63031 * 0.02768 * 8 6 5 10 10 C 1.54469 * 107.29850 * 178.98800 * 9 8 6 11 11 C 1.54308 * 102.87242 * 338.54538 * 10 9 8 12 12 C 1.47584 * 125.62657 * 179.97438 * 8 6 5 13 13 C 1.52019 * 110.69384 * 152.79020 * 11 10 9 14 14 N 1.46277 * 109.96489 * 170.21093 * 13 11 10 15 15 C 1.46503 * 118.81399 * 162.92049 * 14 13 11 16 16 C 1.53003 * 109.47043 * 270.00072 * 15 14 13 17 17 C 1.50702 * 109.47052 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99927 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99516 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00708 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99359 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47408 * 90.00078 * 21 19 17 23 23 H 1.48508 * 109.46924 * 210.00037 * 21 19 17 24 24 H 1.48503 * 109.47411 * 330.00056 * 21 19 17 25 25 C 1.33835 * 122.36622 * 342.92132 * 14 13 11 26 26 O 1.21281 * 118.61224 * 182.98616 * 25 14 13 27 27 C 1.50276 * 122.76685 * 2.70462 * 25 14 13 28 28 O 1.42098 * 110.71680 * 276.30164 * 11 10 9 29 29 H 1.08997 * 109.47438 * 300.01137 * 1 2 3 30 30 H 1.09005 * 109.46393 * 60.00572 * 1 2 3 31 31 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 32 32 H 0.96705 * 113.99915 * 299.99858 * 4 2 1 33 33 H 1.09004 * 109.46835 * 65.00008 * 5 2 1 34 34 H 1.08993 * 109.47154 * 305.00551 * 5 2 1 35 35 H 1.09001 * 109.88297 * 59.56081 * 9 8 6 36 36 H 1.09006 * 109.87472 * 298.41088 * 9 8 6 37 37 H 1.08998 * 110.73509 * 220.19868 * 10 9 8 38 38 H 1.08999 * 110.88664 * 96.95924 * 10 9 8 39 39 H 1.08998 * 110.37452 * 84.46253 * 12 8 6 40 40 H 1.08995 * 110.37585 * 322.11035 * 12 8 6 41 41 H 1.08998 * 109.39356 * 290.36628 * 13 11 10 42 42 H 1.09004 * 109.38661 * 50.05755 * 13 11 10 43 43 H 1.08994 * 109.47506 * 29.99865 * 15 14 13 44 44 H 1.09003 * 109.46887 * 150.00090 * 15 14 13 45 45 H 1.09002 * 109.46655 * 299.99904 * 16 15 14 46 46 H 1.08994 * 109.47420 * 60.00015 * 16 15 14 47 47 H 0.96996 * 120.00565 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.39093 * 103.44325 * 27 25 14 49 49 H 1.09002 * 109.38718 * 223.24635 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0400 -0.7211 1.2494 6 6 3.5418 -0.6147 1.3130 7 8 4.1449 -0.0203 0.4447 8 7 4.2148 -1.1802 2.3347 9 6 3.6115 -1.9272 3.4489 10 6 4.7646 -2.4070 4.3579 11 6 5.9848 -2.3695 3.4140 12 6 5.6788 -1.1531 2.5195 13 6 7.2667 -2.1515 4.2016 14 7 8.4265 -2.3493 3.3325 15 6 9.7277 -1.8315 3.7628 16 6 9.9004 -0.3991 3.2536 17 6 11.2392 0.1332 3.6956 18 1 11.9005 -0.4878 4.2816 19 6 11.6196 1.4131 3.3520 20 7 10.8146 2.1692 2.6380 21 14 13.2788 2.0732 3.9006 22 1 14.3016 1.7593 2.8708 23 1 13.1915 3.5449 4.0791 24 1 13.6623 1.4403 5.1881 25 6 8.3418 -2.9862 2.1585 26 8 9.3566 -3.1603 1.5176 27 6 7.0431 -3.5001 1.6039 28 8 6.0588 -3.5593 2.6407 29 1 -0.3634 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7211 -1.5954 -1.2326 33 1 1.7515 -1.7714 1.2059 34 1 1.6052 -0.2615 2.1370 35 1 3.0608 -2.7857 3.0646 36 1 2.9420 -1.2766 4.0118 37 1 4.5810 -3.4217 4.7110 38 1 4.9057 -1.7271 5.1981 39 1 5.9815 -0.2313 3.0162 40 1 6.1844 -1.2515 1.5590 41 1 7.2800 -1.1359 4.5974 42 1 7.3086 -2.8608 5.0282 43 1 9.7797 -1.8387 4.8515 44 1 10.5209 -2.4596 3.3570 45 1 9.8485 -0.3920 2.1648 46 1 9.1073 0.2289 3.6593 47 1 11.0821 3.0697 2.3966 48 1 6.6975 -2.8327 0.8144 49 1 7.1948 -4.4984 1.1933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270413737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:03 Heat of formation + Delta-G solvation = -187.550734 kcal Electronic energy + Delta-G solvation = -31230.406021 eV Core-core repulsion = 26963.477858 eV Total energy + Delta-G solvation = -4266.928163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.39765 -40.93676 -39.64487 -38.15621 -37.16088 -37.05560 -35.17686 -33.39236 -32.67342 -31.99178 -30.30204 -29.53790 -28.83757 -27.16896 -26.32086 -24.47690 -23.48251 -22.75306 -21.94374 -20.50460 -19.74457 -19.06176 -18.73220 -18.30671 -17.60012 -17.42457 -17.33327 -16.86771 -16.75953 -16.44246 -16.19677 -15.83457 -15.65489 -15.44694 -14.85516 -14.74393 -14.66133 -14.52045 -14.36254 -14.04264 -13.92159 -13.80955 -13.42388 -13.30432 -13.12255 -12.89928 -12.88004 -12.75763 -12.64104 -12.61124 -12.31127 -12.13908 -11.93388 -11.86069 -11.72741 -11.52199 -11.41092 -11.14161 -10.86094 -10.63866 -10.51127 -9.74014 -9.69411 -8.26276 -6.39648 1.35056 1.37610 1.39635 1.50203 1.62803 1.80803 1.87050 2.35512 2.39933 3.07294 3.08494 3.25577 3.41863 3.48522 3.60999 3.69592 3.80654 3.97740 4.10654 4.19290 4.20206 4.26633 4.34045 4.36732 4.38534 4.45666 4.51922 4.57200 4.61600 4.63844 4.67775 4.80961 4.86262 4.90658 4.97888 5.05886 5.13503 5.19080 5.21483 5.32396 5.39244 5.50303 5.68805 5.76865 6.11351 6.34242 6.48919 6.75758 6.93589 6.97482 7.16867 7.30516 8.85766 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.002936 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.274475 B = 9532.922435 C =10609.137804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 H 0.069 0.931 4 O -0.581 6.581 5 C -0.152 4.152 6 C 0.512 3.488 7 O -0.588 6.588 8 N -0.617 5.617 9 C 0.097 3.903 10 C -0.100 4.100 11 C 0.090 3.910 12 C 0.078 3.922 13 C 0.093 3.907 14 N -0.601 5.601 15 C 0.128 3.872 16 C 0.027 3.973 17 C -0.542 4.542 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.971 3.029 22 H -0.278 1.278 23 H -0.280 1.280 24 H -0.254 1.254 25 C 0.471 3.529 26 O -0.592 6.592 27 C 0.063 3.937 28 O -0.339 6.339 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.384 0.616 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.056 0.944 45 H -0.033 1.033 46 H 0.000 1.000 47 H 0.263 0.737 48 H 0.079 0.921 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.387 -12.521 7.521 31.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.050 3.950 3 H 0.088 0.912 4 O -0.388 6.388 5 C -0.192 4.192 6 C 0.303 3.697 7 O -0.468 6.468 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.138 4.138 11 C 0.049 3.951 12 C -0.046 4.046 13 C -0.030 4.030 14 N -0.332 5.332 15 C 0.006 3.994 16 C -0.010 4.010 17 C -0.581 4.581 18 H 0.087 0.913 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.795 3.205 22 H -0.204 1.204 23 H -0.205 1.205 24 H -0.177 1.177 25 C 0.259 3.741 26 O -0.473 6.473 27 C -0.016 4.016 28 O -0.257 6.257 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.232 0.768 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.115 0.885 44 H 0.075 0.925 45 H -0.015 1.015 46 H 0.018 0.982 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.517 -11.689 6.561 29.712 hybrid contribution 1.478 0.797 -0.575 1.775 sum -25.039 -10.892 5.986 27.953 Atomic orbital electron populations 1.22411 0.92991 1.04125 1.03468 1.21726 0.94270 0.95742 0.83249 0.91241 1.86719 1.77916 1.29777 1.44422 1.22491 0.88433 1.05842 1.02399 1.21296 0.91748 0.77332 0.79300 1.90782 1.71649 1.44380 1.39985 1.48671 1.06162 1.54938 1.25375 1.22467 0.96488 0.96929 0.86476 1.22730 0.88420 1.06412 0.96230 1.22351 0.96616 0.84061 0.92061 1.22625 0.83228 0.99034 0.99705 1.22223 0.82255 1.04767 0.93720 1.47805 1.11093 1.54503 1.19781 1.21529 0.83432 0.94673 0.99799 1.19151 0.96204 0.91998 0.93696 1.21537 1.03016 0.99274 1.34243 0.91341 1.26055 1.01633 0.97374 0.94890 1.70128 1.38759 1.09562 1.38974 0.85360 0.78508 0.77415 0.79230 1.20404 1.20544 1.17714 1.21550 0.92619 0.78359 0.81548 1.90717 1.38158 1.59731 1.58719 1.22735 0.82857 1.05235 0.90807 1.87960 1.56489 1.35564 1.45647 0.89705 0.92434 0.90017 0.76781 0.85232 0.84747 0.88539 0.87614 0.85398 0.86029 0.91506 0.94007 0.88908 0.86557 0.88473 0.92515 1.01503 0.98152 0.92786 0.90285 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.53 71.98 0.69 -0.84 16 2 C 0.11 1.88 3.13 30.60 0.10 1.97 16 3 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 4 O -0.58 -13.22 12.57 -135.20 -1.70 -14.92 16 5 C -0.15 -1.92 4.57 29.85 0.14 -1.78 16 6 C 0.51 13.05 7.73 87.66 0.68 13.72 16 7 O -0.59 -23.03 15.69 10.75 0.17 -22.86 16 8 N -0.62 -13.27 3.33 -812.62 -2.71 -15.98 16 9 C 0.10 0.90 6.50 86.77 0.56 1.46 16 10 C -0.10 -0.92 6.12 31.54 0.19 -0.73 16 11 C 0.09 1.88 0.82 -10.31 -0.01 1.87 16 12 C 0.08 2.22 5.75 86.53 0.50 2.72 16 13 C 0.09 2.25 5.35 86.10 0.46 2.71 16 14 N -0.60 -21.79 2.83 -826.21 -2.34 -24.12 16 15 C 0.13 5.54 5.27 86.38 0.46 6.00 16 16 C 0.03 1.53 5.29 29.85 0.16 1.69 16 17 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 18 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 19 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 20 N -0.93 -59.64 13.29 21.45 0.28 -59.36 16 21 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.25 -11.01 7.11 99.48 0.71 -10.30 16 25 C 0.47 18.36 7.44 87.67 0.65 19.01 16 26 O -0.59 -29.06 16.33 -3.03 -0.05 -29.11 16 27 C 0.06 1.80 6.37 71.10 0.45 2.26 16 28 O -0.34 -7.72 10.43 -148.98 -1.55 -9.28 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.38 4.99 9.05 -74.05 -0.67 4.32 16 33 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.12 0.66 8.01 -2.39 -0.02 0.64 16 39 H 0.07 2.12 7.79 -2.39 -0.02 2.10 16 40 H 0.04 1.55 5.87 -2.39 -0.01 1.54 16 41 H 0.09 2.30 7.82 -2.39 -0.02 2.28 16 42 H 0.12 2.02 8.13 -2.38 -0.02 2.00 16 43 H 0.10 3.58 8.04 -2.39 -0.02 3.57 16 44 H 0.06 2.70 7.22 -2.39 -0.02 2.69 16 45 H -0.03 -2.20 8.14 -2.39 -0.02 -2.22 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 48 H 0.08 2.48 6.63 -2.39 -0.02 2.46 16 49 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 Total: -1.00 -96.09 395.89 0.13 -95.96 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.28 Total: 13.22 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.72 Total: 18.85 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -4.76 Total: -99.46 kcal Atomic # 8 Polarization: -73.04 SS G_CDS: -3.13 Total: -76.17 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -96.09 0.13 -95.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270413737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.587 kcal (2) G-P(sol) polarization free energy of solvation -96.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds