Wall clock time and date at job start Sat Apr 11 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46686 * 2 1 4 4 C 1.50702 * 109.47254 * 240.00122 * 2 1 3 5 5 O 1.21275 * 119.99884 * 343.69714 * 4 2 1 6 6 N 1.34779 * 119.99719 * 163.70019 * 4 2 1 7 7 C 1.46501 * 120.00367 * 355.17022 * 6 4 2 8 8 C 1.53001 * 109.46962 * 264.54073 * 7 6 4 9 9 N 1.46493 * 109.46961 * 179.97438 * 8 7 6 10 10 C 1.36946 * 120.00155 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99281 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00114 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00480 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00029 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46926 * 90.00084 * 14 12 10 16 16 H 1.48499 * 109.47323 * 209.99948 * 14 12 10 17 17 H 1.48501 * 109.47023 * 330.00508 * 14 12 10 18 18 C 1.46500 * 119.99529 * 175.16754 * 6 4 2 19 19 C 1.50704 * 109.47164 * 270.28798 * 18 6 4 20 20 C 1.38234 * 119.99587 * 267.80486 * 19 18 6 21 21 C 1.38236 * 119.99608 * 180.32268 * 20 19 18 22 22 C 1.38233 * 120.00296 * 359.93706 * 21 20 19 23 23 C 1.38239 * 119.99661 * 0.05914 * 22 21 20 24 24 C 1.38226 * 119.99849 * 88.08519 * 19 18 6 25 25 C 1.53001 * 109.47446 * 119.99345 * 2 1 3 26 26 C 1.52999 * 109.47348 * 293.84339 * 25 2 1 27 27 F 1.39908 * 109.46436 * 53.84107 * 25 2 1 28 28 F 1.39902 * 109.47218 * 173.83778 * 25 2 1 29 29 H 1.08997 * 109.47058 * 60.00126 * 1 2 3 30 30 H 1.09005 * 109.46686 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47369 * 299.99728 * 1 2 3 32 32 H 1.08999 * 109.46943 * 24.53962 * 7 6 4 33 33 H 1.08994 * 109.47022 * 144.54194 * 7 6 4 34 34 H 1.08997 * 109.47072 * 300.00264 * 8 7 6 35 35 H 1.09001 * 109.46860 * 59.99969 * 8 7 6 36 36 H 0.96996 * 120.00474 * 0.02562 * 9 8 7 37 37 H 0.96992 * 120.00329 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46871 * 150.28853 * 18 6 4 39 39 H 1.08997 * 109.47345 * 30.28772 * 18 6 4 40 40 H 1.07994 * 120.00650 * 0.28030 * 20 19 18 41 41 H 1.08006 * 119.99692 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00314 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.99782 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00182 * 359.71450 * 24 19 18 45 45 H 1.08996 * 109.47236 * 59.99677 * 26 25 2 46 46 H 1.08999 * 109.47040 * 179.97438 * 26 25 2 47 47 H 1.08998 * 109.46861 * 299.99574 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 1.2841 -1.4196 -1.8692 6 7 3.3133 -0.5576 -1.6210 7 6 4.1882 0.3801 -0.9128 8 6 4.1976 1.7225 -1.6469 9 7 5.0720 2.6603 -0.9384 10 6 5.2386 3.9338 -1.4138 11 1 4.7250 4.2467 -2.3109 12 6 6.0675 4.8222 -0.7428 13 7 6.6938 4.4406 0.3501 14 14 6.2954 6.5590 -1.3917 15 1 5.2696 7.4499 -0.7922 16 1 7.6495 7.0492 -1.0294 17 1 6.1479 6.5586 -2.8694 18 6 3.8306 -1.3293 -2.7538 19 6 4.3958 -2.6346 -2.2560 20 6 5.7367 -2.7288 -1.9333 21 6 6.2566 -3.9280 -1.4831 22 6 5.4354 -5.0325 -1.3544 23 6 4.0945 -4.9381 -1.6770 24 6 3.5747 -3.7391 -2.1277 25 6 2.0401 -0.7211 1.2493 26 6 1.6604 0.0840 2.4937 27 9 1.4617 -1.9929 1.3223 28 9 3.4319 -0.8450 1.1807 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 3.8200 0.5240 0.1030 33 1 5.2005 -0.0225 -0.8788 34 1 4.5657 1.5785 -2.6627 35 1 3.1852 2.1251 -1.6809 36 1 5.5336 2.3792 -0.1330 37 1 7.2728 5.0616 0.8192 38 1 4.6151 -0.7604 -3.2529 39 1 3.0223 -1.5282 -3.4574 40 1 6.3782 -1.8659 -2.0335 41 1 7.3043 -4.0017 -1.2314 42 1 5.8415 -5.9692 -1.0023 43 1 3.4530 -5.8012 -1.5769 44 1 2.5272 -3.6655 -2.3798 45 1 0.5760 0.1805 2.5471 46 1 2.0234 -0.4300 3.3837 47 1 2.1110 1.0749 2.4368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271819370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:57 Heat of formation + Delta-G solvation = -93.987657 kcal Electronic energy + Delta-G solvation = -31391.234628 eV Core-core repulsion = 27017.276149 eV Total energy + Delta-G solvation = -4373.958479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -49.13909 -47.09465 -40.22848 -38.88713 -36.25457 -34.79615 -34.29911 -32.06754 -30.98977 -30.84624 -29.85877 -27.85660 -26.81417 -24.90841 -23.76859 -22.51513 -22.21108 -21.66377 -21.04536 -18.96583 -17.86870 -17.66786 -17.19275 -16.75033 -16.66264 -16.30032 -15.54655 -15.38175 -14.95115 -14.81619 -14.33013 -14.23610 -13.98926 -13.74607 -13.51135 -13.34962 -13.22837 -13.07391 -13.03214 -12.86257 -12.82707 -12.79740 -12.46591 -12.19107 -12.12359 -11.80750 -11.55756 -11.52798 -11.23505 -11.09661 -10.97607 -10.89744 -10.85662 -10.53816 -10.16345 -9.83996 -9.76699 -8.95505 -8.87543 -8.77725 -8.52253 -7.02597 -5.83689 -3.13853 1.29983 1.44860 2.48806 3.01819 3.39219 3.45160 3.46449 3.65950 3.87431 3.96593 4.16058 4.26882 4.53467 4.65668 4.82681 4.86665 4.88998 5.02274 5.09680 5.16266 5.27833 5.32544 5.34102 5.49757 5.50862 5.53484 5.54228 5.62504 5.65187 5.69097 5.78804 5.80672 5.94252 6.01129 6.05005 6.08592 6.11089 6.40239 6.48451 6.52872 6.61739 6.65988 6.75793 7.02936 7.43826 7.63943 8.15703 8.34343 9.45941 10.00303 10.35501 11.38727 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.003892 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.654603 B = 7192.978175 C = 8597.503016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.159 4.159 3 H 0.129 0.871 4 C 0.524 3.476 5 O -0.534 6.534 6 N -0.591 5.591 7 C 0.079 3.921 8 C 0.138 3.862 9 N -0.729 5.729 10 C -0.242 4.242 11 H 0.070 0.930 12 C -0.010 4.010 13 N -0.931 5.931 14 Si 0.907 3.093 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.282 1.282 18 C 0.152 3.848 19 C -0.102 4.102 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.097 4.097 25 C 0.298 3.702 26 C -0.196 4.196 27 F -0.195 7.195 28 F -0.185 7.185 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.021 0.979 35 H 0.019 0.981 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -15.744 0.941 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.181 4.181 3 H 0.147 0.853 4 C 0.311 3.689 5 O -0.411 6.411 6 N -0.322 5.322 7 C -0.043 4.043 8 C 0.009 3.991 9 N -0.374 5.374 10 C -0.373 4.373 11 H 0.088 0.912 12 C -0.206 4.206 13 N -0.580 5.580 14 Si 0.738 3.262 15 H -0.217 1.217 16 H -0.217 1.217 17 H -0.207 1.207 18 C 0.030 3.970 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.115 4.115 25 C 0.261 3.739 26 C -0.254 4.254 27 F -0.176 7.176 28 F -0.166 7.166 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.982 -15.995 0.482 18.351 hybrid contribution 0.674 0.843 0.002 1.079 sum -8.308 -15.152 0.485 17.287 Atomic orbital electron populations 1.21653 0.90230 1.04084 1.03123 1.22496 1.00634 1.02744 0.92240 0.85322 1.20117 0.81732 0.81363 0.85665 1.90643 1.55427 1.39547 1.55434 1.47828 1.10596 1.41027 1.32731 1.22409 0.95058 0.89220 0.97656 1.21003 0.94476 0.88399 0.95192 1.42211 1.54242 1.10056 1.30941 1.19188 1.22705 0.88036 1.07355 0.91175 1.24731 0.99809 0.98466 0.97635 1.69652 1.33918 1.35284 1.19110 0.86195 0.77147 0.84684 0.78182 1.21656 1.21702 1.20731 1.20384 0.99610 0.88823 0.88155 1.20228 0.93935 0.95577 1.00621 1.21141 0.94841 0.97836 0.98199 1.21126 0.99805 0.93128 1.00160 1.21138 0.94009 0.98539 1.00124 1.21129 0.95454 0.97774 1.00069 1.21187 0.99853 0.92373 0.98129 1.20904 0.74831 0.80883 0.97263 1.22848 1.04839 1.02009 0.95661 1.93029 1.84171 1.42997 1.97378 1.92978 1.30670 1.95792 1.97170 0.90789 0.90720 0.91170 0.87999 0.90192 0.96073 0.96351 0.78170 0.93413 0.89132 0.88991 0.85835 0.86128 0.86410 0.86369 0.85683 0.88903 0.89665 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.21 37.16 0.31 -1.14 16 2 C -0.16 -2.04 1.71 -91.77 -0.16 -2.19 16 3 H 0.13 1.61 7.07 -51.93 -0.37 1.24 16 4 C 0.52 8.01 6.55 -10.98 -0.07 7.93 16 5 O -0.53 -9.12 15.13 5.56 0.08 -9.03 16 6 N -0.59 -8.77 2.35 -175.06 -0.41 -9.18 16 7 C 0.08 1.25 4.21 -4.04 -0.02 1.24 16 8 C 0.14 2.63 6.58 -4.04 -0.03 2.60 16 9 N -0.73 -17.48 5.60 -59.91 -0.34 -17.82 16 10 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 11 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 12 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 13 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 14 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.15 2.09 5.59 -5.19 -0.03 2.06 16 19 C -0.10 -1.39 5.46 -104.63 -0.57 -1.97 16 20 C -0.10 -1.31 9.69 -39.58 -0.38 -1.70 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.10 -1.31 9.71 -39.59 -0.38 -1.70 16 25 C 0.30 3.77 1.69 -26.73 -0.05 3.72 16 26 C -0.20 -1.84 9.16 37.16 0.34 -1.50 16 27 F -0.19 -2.76 16.16 2.25 0.04 -2.73 16 28 F -0.19 -2.73 13.01 2.25 0.03 -2.70 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.89 7.45 -51.93 -0.39 0.50 16 31 H 0.07 0.57 6.60 -51.93 -0.34 0.23 16 32 H 0.10 1.60 3.87 -51.93 -0.20 1.40 16 33 H 0.08 1.29 8.11 -51.93 -0.42 0.86 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.38 9.64 7.67 -40.82 -0.31 9.32 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.09 1.15 8.00 -51.93 -0.42 0.74 16 39 H 0.09 1.26 7.33 -51.93 -0.38 0.88 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 45 H 0.09 0.69 6.60 -51.93 -0.34 0.34 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -31.83 389.73 -8.42 -40.25 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.92 Total: 10.21 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.48 Total: -5.22 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.02 Total: -53.39 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.07 Total: -5.43 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.83 -8.42 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271819370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.737 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds