Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46686 * 2 1 4 4 C 1.50702 * 109.47254 * 240.00122 * 2 1 3 5 5 O 1.21275 * 119.99884 * 343.69714 * 4 2 1 6 6 N 1.34779 * 119.99719 * 163.70019 * 4 2 1 7 7 C 1.46501 * 120.00367 * 355.17022 * 6 4 2 8 8 C 1.53001 * 109.46962 * 264.54073 * 7 6 4 9 9 N 1.46493 * 109.46961 * 179.97438 * 8 7 6 10 10 C 1.36946 * 120.00155 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99281 * 0.02562 * 10 9 8 12 12 C 1.38802 * 120.00114 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00480 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00029 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46926 * 90.00084 * 14 12 10 16 16 H 1.48499 * 109.47323 * 209.99948 * 14 12 10 17 17 H 1.48501 * 109.47023 * 330.00508 * 14 12 10 18 18 C 1.46500 * 119.99529 * 175.16754 * 6 4 2 19 19 C 1.50704 * 109.47164 * 270.28798 * 18 6 4 20 20 C 1.38234 * 119.99587 * 267.80486 * 19 18 6 21 21 C 1.38236 * 119.99608 * 180.32268 * 20 19 18 22 22 C 1.38233 * 120.00296 * 359.93706 * 21 20 19 23 23 C 1.38239 * 119.99661 * 0.05914 * 22 21 20 24 24 C 1.38226 * 119.99849 * 88.08519 * 19 18 6 25 25 C 1.53001 * 109.47446 * 119.99345 * 2 1 3 26 26 C 1.52999 * 109.47348 * 293.84339 * 25 2 1 27 27 F 1.39908 * 109.46436 * 53.84107 * 25 2 1 28 28 F 1.39902 * 109.47218 * 173.83778 * 25 2 1 29 29 H 1.08997 * 109.47058 * 60.00126 * 1 2 3 30 30 H 1.09005 * 109.46686 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47369 * 299.99728 * 1 2 3 32 32 H 1.08999 * 109.46943 * 24.53962 * 7 6 4 33 33 H 1.08994 * 109.47022 * 144.54194 * 7 6 4 34 34 H 1.08997 * 109.47072 * 300.00264 * 8 7 6 35 35 H 1.09001 * 109.46860 * 59.99969 * 8 7 6 36 36 H 0.96996 * 120.00474 * 0.02562 * 9 8 7 37 37 H 0.96992 * 120.00329 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46871 * 150.28853 * 18 6 4 39 39 H 1.08997 * 109.47345 * 30.28772 * 18 6 4 40 40 H 1.07994 * 120.00650 * 0.28030 * 20 19 18 41 41 H 1.08006 * 119.99692 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00314 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.99782 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00182 * 359.71450 * 24 19 18 45 45 H 1.08996 * 109.47236 * 59.99677 * 26 25 2 46 46 H 1.08999 * 109.47040 * 179.97438 * 26 25 2 47 47 H 1.08998 * 109.46861 * 299.99574 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 1.2841 -1.4196 -1.8692 6 7 3.3133 -0.5576 -1.6210 7 6 4.1882 0.3801 -0.9128 8 6 4.1976 1.7225 -1.6469 9 7 5.0720 2.6603 -0.9384 10 6 5.2386 3.9338 -1.4138 11 1 4.7250 4.2467 -2.3109 12 6 6.0675 4.8222 -0.7428 13 7 6.6938 4.4406 0.3501 14 14 6.2954 6.5590 -1.3917 15 1 5.2696 7.4499 -0.7922 16 1 7.6495 7.0492 -1.0294 17 1 6.1479 6.5586 -2.8694 18 6 3.8306 -1.3293 -2.7538 19 6 4.3958 -2.6346 -2.2560 20 6 5.7367 -2.7288 -1.9333 21 6 6.2566 -3.9280 -1.4831 22 6 5.4354 -5.0325 -1.3544 23 6 4.0945 -4.9381 -1.6770 24 6 3.5747 -3.7391 -2.1277 25 6 2.0401 -0.7211 1.2493 26 6 1.6604 0.0840 2.4937 27 9 1.4617 -1.9929 1.3223 28 9 3.4319 -0.8450 1.1807 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 3.8200 0.5240 0.1030 33 1 5.2005 -0.0225 -0.8788 34 1 4.5657 1.5785 -2.6627 35 1 3.1852 2.1251 -1.6809 36 1 5.5336 2.3792 -0.1330 37 1 7.2728 5.0616 0.8192 38 1 4.6151 -0.7604 -3.2529 39 1 3.0223 -1.5282 -3.4574 40 1 6.3782 -1.8659 -2.0335 41 1 7.3043 -4.0017 -1.2314 42 1 5.8415 -5.9692 -1.0023 43 1 3.4530 -5.8012 -1.5769 44 1 2.5272 -3.6655 -2.3798 45 1 0.5760 0.1805 2.5471 46 1 2.0234 -0.4300 3.3837 47 1 2.1110 1.0749 2.4368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271819370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -110.632795 kcal Electronic energy + Delta-G solvation = -31391.956415 eV Core-core repulsion = 27017.276149 eV Total energy + Delta-G solvation = -4374.680267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -50.19861 -48.17063 -41.39857 -39.89392 -37.66165 -36.08702 -35.69466 -33.53235 -32.49367 -31.81202 -30.70680 -29.44003 -27.88192 -26.05744 -25.43504 -23.58407 -23.30162 -23.10789 -22.05069 -20.19064 -19.29832 -18.73860 -18.71077 -17.83945 -17.79075 -17.37936 -16.77842 -16.62434 -16.26972 -15.94219 -15.68083 -15.53120 -15.32201 -15.05186 -14.95653 -14.66461 -14.44158 -14.32411 -14.17066 -13.89242 -13.76235 -13.62784 -13.46700 -13.10644 -13.08747 -13.02024 -12.93943 -12.80562 -12.76698 -12.47936 -12.36144 -12.15774 -12.08410 -11.89107 -11.82693 -11.73068 -10.99875 -10.91570 -9.85763 -9.84715 -9.69331 -9.01827 -7.93819 -5.23686 0.31958 0.47297 1.30675 1.50731 1.51128 1.59552 1.86539 2.57500 2.66981 2.89504 3.01524 3.13437 3.29042 3.40201 3.62440 3.80151 3.89129 3.98980 4.00948 4.11831 4.13124 4.19262 4.26072 4.27603 4.29145 4.54331 4.56841 4.60334 4.67399 4.68120 4.72573 4.75954 4.80422 4.95348 5.04053 5.06159 5.10024 5.13731 5.21511 5.39995 5.51771 5.53863 5.58088 5.65457 6.08216 6.20823 6.28285 6.95063 7.35247 8.05840 8.31533 9.28887 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.003892 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.654603 B = 7192.978175 C = 8597.503016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.159 4.159 3 H 0.133 0.867 4 C 0.516 3.484 5 O -0.556 6.556 6 N -0.589 5.589 7 C 0.097 3.903 8 C 0.143 3.857 9 N -0.738 5.738 10 C -0.246 4.246 11 H 0.073 0.927 12 C -0.065 4.065 13 N -0.963 5.963 14 Si 0.969 3.031 15 H -0.286 1.286 16 H -0.296 1.296 17 H -0.273 1.273 18 C 0.151 3.849 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.114 4.114 25 C 0.290 3.710 26 C -0.191 4.191 27 F -0.206 7.206 28 F -0.200 7.200 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 -15.934 1.392 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.181 4.181 3 H 0.151 0.849 4 C 0.304 3.696 5 O -0.434 6.434 6 N -0.320 5.320 7 C -0.026 4.026 8 C 0.016 3.984 9 N -0.382 5.382 10 C -0.378 4.378 11 H 0.091 0.909 12 C -0.258 4.258 13 N -0.614 5.614 14 Si 0.798 3.202 15 H -0.213 1.213 16 H -0.222 1.222 17 H -0.198 1.198 18 C 0.029 3.971 19 C -0.115 4.115 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.133 4.133 25 C 0.254 3.746 26 C -0.248 4.248 27 F -0.187 7.187 28 F -0.181 7.181 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.210 0.790 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.111 0.889 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.288 -16.203 0.904 18.699 hybrid contribution 0.737 0.800 -0.193 1.104 sum -8.552 -15.404 0.711 17.633 Atomic orbital electron populations 1.21677 0.88686 1.03743 1.04590 1.22584 1.01945 1.02433 0.91114 0.84925 1.20638 0.81525 0.81174 0.86223 1.90628 1.55860 1.40584 1.56347 1.47848 1.10539 1.40722 1.32865 1.22135 0.95251 0.87780 0.97442 1.21051 0.93417 0.89086 0.94893 1.42322 1.54824 1.10061 1.30962 1.19528 1.21966 0.89200 1.07115 0.90922 1.25465 1.00163 1.02050 0.98154 1.69789 1.34877 1.36312 1.20381 0.85219 0.76588 0.80412 0.77983 1.21255 1.22219 1.19783 1.20439 0.99593 0.89220 0.87844 1.20216 0.94423 0.95381 1.01455 1.21274 0.94593 0.98681 0.98748 1.21451 1.01039 0.92743 0.99328 1.21492 0.93549 0.99565 0.99101 1.21410 0.96325 0.97759 0.99406 1.21201 0.99370 0.93327 0.99356 1.21310 0.73960 0.80720 0.98628 1.22887 1.06465 1.01458 0.94013 1.93006 1.84251 1.43937 1.97478 1.92939 1.32048 1.95842 1.97309 0.91033 0.91916 0.88018 0.87460 0.90355 0.96291 0.96080 0.79014 0.93879 0.88498 0.89522 0.85624 0.84005 0.83551 0.84486 0.86999 0.86562 0.88903 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.21 71.98 0.59 -2.04 16 2 C -0.16 -3.93 1.71 -11.54 -0.02 -3.95 16 3 H 0.13 3.16 7.07 -2.38 -0.02 3.14 16 4 C 0.52 15.78 6.55 87.66 0.57 16.36 16 5 O -0.56 -19.28 15.13 -3.01 -0.05 -19.33 16 6 N -0.59 -17.55 2.35 -826.16 -1.94 -19.49 16 7 C 0.10 3.05 4.21 86.38 0.36 3.42 16 8 C 0.14 5.41 6.58 86.38 0.57 5.98 16 9 N -0.74 -35.21 5.60 -343.46 -1.92 -37.14 16 10 C -0.25 -13.15 9.99 84.03 0.84 -12.31 16 11 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 12 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 13 N -0.96 -56.21 13.06 21.65 0.28 -55.93 16 14 Si 0.97 44.41 29.55 68.60 2.03 46.43 16 15 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 C 0.15 4.21 5.59 85.63 0.48 4.69 16 19 C -0.11 -3.12 5.46 -19.87 -0.11 -3.23 16 20 C -0.11 -2.90 9.69 22.27 0.22 -2.69 16 21 C -0.13 -2.82 10.05 22.27 0.22 -2.59 16 22 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 23 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 24 C -0.11 -3.12 9.71 22.27 0.22 -2.90 16 25 C 0.29 7.04 1.69 30.59 0.05 7.09 16 26 C -0.19 -3.18 9.16 71.98 0.66 -2.52 16 27 F -0.21 -5.70 16.16 44.97 0.73 -4.97 16 28 F -0.20 -5.80 13.01 44.97 0.59 -5.22 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.44 7.45 -2.38 -0.02 1.42 16 31 H 0.10 1.39 6.60 -2.39 -0.02 1.37 16 32 H 0.11 3.32 3.87 -2.39 -0.01 3.31 16 33 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 36 H 0.38 18.98 7.67 -92.71 -0.71 18.27 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.10 2.50 8.00 -2.39 -0.02 2.48 16 39 H 0.09 2.48 7.33 -2.39 -0.02 2.46 16 40 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.11 3.29 7.62 -2.91 -0.02 3.27 16 45 H 0.12 1.36 6.60 -2.39 -0.02 1.35 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.47 389.73 5.55 -61.91 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.27 Total: 36.60 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.57 Total: -2.87 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.58 Total: -112.55 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 1.31 Total: -10.19 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.47 5.55 -61.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271819370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.721 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds