Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00423 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99649 * 179.97438 * 8 7 6 11 11 H 1.09004 * 109.46729 * 60.00092 * 10 8 7 12 12 C 1.52999 * 109.47221 * 300.00415 * 10 8 7 13 13 C 1.50700 * 109.47087 * 180.02562 * 10 8 7 14 14 C 1.38226 * 119.98729 * 59.99956 * 13 10 8 15 15 C 1.38183 * 120.05217 * 179.97438 * 14 13 10 16 16 C 1.38501 * 120.02447 * 359.97438 * 15 14 13 17 17 F 1.35095 * 120.01342 * 179.97438 * 16 15 14 18 18 C 1.38399 * 119.97351 * 359.97438 * 16 15 14 19 19 C 1.38448 * 119.94845 * 359.76930 * 18 16 15 20 20 F 1.35096 * 120.00948 * 180.22823 * 19 18 16 21 21 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 34 34 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 36 36 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 37 37 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 38 38 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 39 39 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 40 40 H 1.08993 * 109.46979 * 299.99970 * 12 10 8 41 41 H 1.09004 * 109.46990 * 59.99800 * 12 10 8 42 42 H 1.09004 * 109.46811 * 179.97438 * 12 10 8 43 43 H 1.07996 * 119.97522 * 359.97438 * 14 13 10 44 44 H 1.08000 * 119.99207 * 179.97438 * 15 14 13 45 45 H 1.07996 * 120.02537 * 179.97438 * 18 16 15 46 46 H 0.97004 * 119.99747 * 265.00379 * 21 4 2 47 47 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0441 -4.7513 1.8274 10 6 2.4067 -4.9300 3.7461 11 1 2.1190 -4.4424 4.6776 12 6 3.9314 -4.9287 3.6195 13 6 1.9043 -6.3508 3.7461 14 6 2.1505 -7.1706 2.6608 15 6 1.6909 -8.4738 2.6597 16 6 0.9833 -8.9601 3.7464 17 9 0.5337 -10.2340 3.7448 18 6 0.7371 -8.1404 4.8341 19 6 1.2027 -6.8365 4.8363 20 9 0.9670 -6.0368 5.8993 21 7 3.5050 -0.7207 1.2495 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2015 2.1466 24 6 5.5773 0.3549 1.7508 25 7 6.2358 -0.6800 1.2736 26 14 6.5107 1.8210 2.4355 27 1 7.9708 1.5730 2.3266 28 1 6.1563 3.0384 1.6624 29 1 6.1470 2.0171 3.8618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4437 -2.1651 1.3387 38 1 1.8184 -2.6510 0.3178 39 1 2.7227 -2.4348 2.9848 40 1 4.2190 -5.4161 2.6880 41 1 4.2951 -3.9011 3.6192 42 1 4.3663 -5.4675 4.4613 43 1 2.7025 -6.7924 1.8131 44 1 1.8835 -9.1134 1.8110 45 1 0.1851 -8.5186 5.6818 46 1 3.9903 -1.4819 0.8944 47 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271940377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -107.926023 kcal Electronic energy + Delta-G solvation = -29973.974581 eV Core-core repulsion = 25599.411688 eV Total energy + Delta-G solvation = -4374.562892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -49.22448 -49.20376 -40.21825 -38.69592 -37.35580 -34.27170 -33.90071 -33.48100 -31.02562 -30.35089 -29.33122 -27.85216 -26.13018 -24.89355 -23.72097 -23.31392 -22.54372 -21.56171 -20.06732 -19.25158 -18.45948 -17.73449 -17.45214 -16.85669 -16.30835 -16.11310 -15.89100 -15.49688 -15.36451 -15.19597 -14.71276 -14.58956 -14.42358 -14.14079 -13.72651 -13.69548 -13.53297 -13.20934 -12.98481 -12.81380 -12.50600 -12.25297 -12.09492 -12.01887 -11.88363 -11.69805 -11.43837 -11.27985 -11.21825 -10.96870 -10.83369 -10.45355 -10.20279 -10.11705 -9.93993 -9.63044 -9.26350 -9.24606 -8.97534 -8.81065 -8.74266 -7.15074 -6.17560 -3.19503 0.72010 0.83031 2.78065 3.07653 3.46168 3.47423 3.50842 3.64696 3.65711 4.15925 4.28946 4.35970 4.57971 4.61346 4.84076 4.98623 5.05061 5.11995 5.22286 5.26912 5.45441 5.50799 5.54495 5.60966 5.67382 5.68195 5.70081 5.75385 5.77790 5.85245 5.88625 6.05495 6.09038 6.12852 6.14826 6.27361 6.33788 6.43867 6.52504 6.54511 6.57518 6.80434 6.96257 7.22390 7.73434 7.78167 8.41019 8.66121 9.10454 9.97249 10.12211 11.29225 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002789 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.051628 B =10035.304778 C =11117.685823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.710 5.710 8 C 0.516 3.484 9 O -0.546 6.546 10 C -0.074 4.074 11 H 0.109 0.891 12 C -0.142 4.142 13 C -0.103 4.103 14 C -0.027 4.027 15 C -0.163 4.163 16 C 0.125 3.875 17 F -0.134 7.134 18 C -0.195 4.195 19 C 0.134 3.866 20 F -0.130 7.130 21 N -0.732 5.732 22 C -0.327 4.327 23 H 0.067 0.933 24 C -0.041 4.041 25 N -0.941 5.941 26 Si 1.074 2.926 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.367 0.633 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -11.627 4.990 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.424 6.424 10 C -0.095 4.095 11 H 0.127 0.873 12 C -0.199 4.199 13 C -0.104 4.104 14 C -0.045 4.045 15 C -0.182 4.182 16 C 0.106 3.894 17 F -0.113 7.113 18 C -0.214 4.214 19 C 0.115 3.885 20 F -0.108 7.108 21 N -0.375 5.375 22 C -0.458 4.458 23 H 0.085 0.915 24 C -0.240 4.240 25 N -0.586 5.586 26 Si 0.905 3.095 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.201 0.799 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.687 -11.205 4.890 14.998 hybrid contribution -1.416 -0.585 0.022 1.532 sum -10.103 -11.790 4.912 16.285 Atomic orbital electron populations 1.21942 0.96767 1.00957 1.01032 1.21711 0.93617 0.97895 0.99803 1.21812 1.04242 0.94497 0.99009 1.20481 0.85811 0.91056 0.96145 0.92762 1.21767 0.97474 0.93220 0.88726 1.45973 1.48494 1.10749 1.30912 1.20260 0.81411 0.82265 0.85925 1.90685 1.36391 1.67898 1.47442 1.20226 0.98076 0.91670 0.99553 0.87319 1.21823 0.90895 1.04155 1.03064 1.19469 1.00684 0.96160 0.94090 1.20714 0.95749 0.91356 0.96648 1.21184 1.01173 0.97217 0.98588 1.17283 0.97613 0.79380 0.95142 1.91518 1.87175 1.35857 1.96734 1.20908 1.06491 0.93321 1.00715 1.17071 0.98486 0.88243 0.84707 1.91511 1.92529 1.72746 1.54021 1.42459 0.99397 1.20922 1.74687 1.19979 0.91558 0.97328 1.36939 0.91508 1.25670 0.93384 1.03686 1.01219 1.70900 1.37323 1.07044 1.43293 0.83311 0.76421 0.74240 0.75489 1.21151 1.22310 1.22304 0.93139 0.93475 0.93078 0.92103 0.89469 0.94998 0.94036 0.91486 0.91978 0.75329 0.91614 0.90377 0.91246 0.83968 0.83988 0.83527 0.79900 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.84 37.16 0.33 -1.73 16 2 C -0.11 -1.80 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 4 C 0.18 3.10 2.18 -67.93 -0.15 2.95 16 5 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.11 1.81 4.73 -4.04 -0.02 1.79 16 7 N -0.71 -10.93 5.28 -60.29 -0.32 -11.25 16 8 C 0.52 7.84 7.02 -10.98 -0.08 7.76 16 9 O -0.55 -9.71 15.11 5.56 0.08 -9.62 16 10 C -0.07 -0.92 2.88 -92.92 -0.27 -1.19 16 11 H 0.11 1.27 7.13 -51.93 -0.37 0.90 16 12 C -0.14 -1.63 8.90 37.16 0.33 -1.30 16 13 C -0.10 -1.26 4.40 -104.55 -0.46 -1.72 16 14 C -0.03 -0.31 7.92 -39.61 -0.31 -0.62 16 15 C -0.16 -1.69 10.03 -39.50 -0.40 -2.08 16 16 C 0.13 1.35 7.30 -39.43 -0.29 1.06 16 17 F -0.13 -1.45 17.27 2.25 0.04 -1.41 16 18 C -0.19 -2.07 10.01 -39.44 -0.39 -2.46 16 19 C 0.13 1.59 7.24 -39.43 -0.29 1.31 16 20 F -0.13 -1.57 16.19 2.25 0.04 -1.54 16 21 N -0.73 -15.72 4.44 -53.43 -0.24 -15.96 16 22 C -0.33 -8.02 7.57 -15.06 -0.11 -8.14 16 23 H 0.07 1.64 7.40 -52.48 -0.39 1.25 16 24 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 25 N -0.94 -26.65 13.70 55.49 0.76 -25.89 16 26 Si 1.07 24.19 29.92 -169.99 -5.09 19.11 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.30 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.30 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 6.55 -51.93 -0.34 0.33 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.85 6.01 -51.93 -0.31 1.53 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.04 6.71 -51.92 -0.35 0.69 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.41 6.41 7.56 -40.82 -0.31 6.10 16 40 H 0.06 0.75 7.38 -51.93 -0.38 0.37 16 41 H 0.08 0.99 7.57 -51.93 -0.39 0.59 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.14 1.60 7.51 -52.49 -0.39 1.20 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 46 H 0.37 8.40 6.63 -40.82 -0.27 8.13 16 47 H 0.25 7.11 6.77 -40.82 -0.28 6.83 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -28.50 387.10 -7.83 -36.33 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.80 Total: 14.15 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.14 Total: -9.75 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.20 Total: -53.09 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.09 Total: 19.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.50 -7.83 -36.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271940377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.595 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds