Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99870 * 2 1 4 4 O 1.20829 * 120.00180 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00027 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46788 * 299.99922 * 5 3 2 7 7 C 1.52997 * 109.47414 * 59.99590 * 5 3 2 8 8 C 1.52998 * 109.47165 * 180.02562 * 5 3 2 9 9 N 1.46900 * 109.47025 * 174.99799 * 8 5 3 10 10 C 1.48042 * 111.00229 * 190.00015 * 9 8 5 11 11 C 1.53501 * 86.04638 * 137.28743 * 10 9 8 12 12 C 1.48052 * 111.00063 * 289.44047 * 9 8 5 13 13 C 1.52787 * 113.49415 * 222.17845 * 11 10 9 14 14 O 1.43377 * 108.24011 * 273.90394 * 13 11 10 15 15 C 1.42830 * 113.33746 * 294.34861 * 14 13 11 16 16 C 1.50277 * 110.49615 * 51.29358 * 15 14 13 17 17 O 1.21288 * 118.96574 * 161.62385 * 16 15 14 18 18 N 1.34263 * 122.05951 * 341.64816 * 16 15 14 19 19 C 1.46510 * 119.37696 * 181.93407 * 18 16 15 20 20 C 1.53003 * 109.46859 * 274.07937 * 19 18 16 21 21 C 1.50704 * 109.46959 * 174.90509 * 20 19 18 22 22 H 1.07997 * 119.99882 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99656 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99723 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00079 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46925 * 90.00162 * 25 23 21 27 27 H 1.48502 * 109.46744 * 209.99826 * 25 23 21 28 28 H 1.48497 * 109.47274 * 330.00064 * 25 23 21 29 29 H 1.08998 * 109.46766 * 299.99500 * 1 2 3 30 30 H 1.09000 * 109.47286 * 59.99482 * 1 2 3 31 31 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46872 * 60.00384 * 7 5 3 33 33 H 1.08996 * 109.47374 * 180.02562 * 7 5 3 34 34 H 1.09003 * 109.47218 * 300.00846 * 7 5 3 35 35 H 1.08997 * 109.46960 * 54.99922 * 8 5 3 36 36 H 1.08993 * 109.47290 * 294.99678 * 8 5 3 37 37 H 1.09002 * 113.78033 * 23.00647 * 10 9 8 38 38 H 1.09000 * 113.78114 * 251.57563 * 10 9 8 39 39 H 1.09000 * 113.77628 * 108.41819 * 12 9 8 40 40 H 1.08998 * 113.77656 * 336.99293 * 12 9 8 41 41 H 1.09002 * 109.72010 * 154.21265 * 13 11 10 42 42 H 1.08997 * 109.70097 * 33.58899 * 13 11 10 43 43 H 1.08998 * 109.27376 * 171.55702 * 15 14 13 44 44 H 1.09005 * 109.26560 * 291.03236 * 15 14 13 45 45 H 1.09001 * 109.47370 * 34.07620 * 19 18 16 46 46 H 1.08990 * 109.47219 * 154.08258 * 19 18 16 47 47 H 1.08995 * 109.46893 * 294.90537 * 20 19 18 48 48 H 1.08997 * 109.47300 * 54.90569 * 20 19 18 49 49 H 0.96996 * 119.99951 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 6 4.1129 0.5816 -1.2501 8 6 4.0001 2.7421 0.0002 9 7 5.4621 2.8204 0.1204 10 6 5.9005 4.2132 0.3642 11 6 6.8649 3.6160 1.3985 12 6 5.9052 2.4208 1.4753 13 6 6.9426 4.4210 2.6948 14 8 7.9189 5.4568 2.5220 15 6 9.2474 4.9599 2.3543 16 6 9.2857 3.9136 1.2763 17 8 10.3511 3.6300 0.7706 18 7 8.1775 3.2834 0.8550 19 6 8.2884 2.2425 -0.1700 20 6 8.2544 2.8871 -1.5572 21 6 8.4935 1.8327 -2.6070 22 1 8.6533 0.8055 -2.3141 23 6 8.5073 2.1792 -3.9415 24 7 8.7165 1.2592 -4.8576 25 14 8.2301 3.9557 -4.4480 26 1 9.5346 4.6629 -4.5067 27 1 7.5856 3.9943 -5.7853 28 1 7.3500 4.6221 -3.4548 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.7229 1.0758 -2.1399 33 1 5.2014 0.6382 -1.2503 34 1 3.8038 -0.4637 -1.2502 35 1 3.5382 3.2571 0.8425 36 1 3.6863 3.2143 -0.9307 37 1 5.1279 4.8476 0.7986 38 1 6.4001 4.6725 -0.4888 39 1 6.4083 1.4544 1.5059 40 1 5.1339 2.5248 2.2384 41 1 7.2403 3.7685 3.5156 42 1 5.9706 4.8643 2.9109 43 1 9.9075 5.7829 2.0805 44 1 9.5888 4.5225 3.2925 45 1 9.2280 1.7051 -0.0420 46 1 7.4554 1.5463 -0.0724 47 1 7.2800 3.3475 -1.7200 48 1 9.0316 3.6484 -1.6232 49 1 8.7258 1.5028 -5.7964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273415224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = -110.660231 kcal Electronic energy + Delta-G solvation = -31961.108225 eV Core-core repulsion = 27697.514284 eV Total energy + Delta-G solvation = -4263.593941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53863 -40.66181 -39.06919 -37.52134 -36.77871 -35.26758 -33.92035 -32.68666 -30.63134 -29.84626 -28.15115 -27.62127 -26.78782 -26.44749 -24.62358 -24.14403 -22.55473 -21.10800 -20.60077 -20.01797 -18.29520 -17.82379 -17.64312 -16.98858 -16.91893 -16.52176 -16.26718 -15.96461 -15.67207 -15.10225 -14.92620 -14.54659 -14.37039 -14.02116 -13.85533 -13.64570 -13.62373 -13.19292 -12.97228 -12.81191 -12.56563 -12.49670 -12.47505 -12.03161 -11.95642 -11.87177 -11.50455 -11.31159 -11.16798 -11.07829 -11.01156 -10.89806 -10.79050 -10.54002 -10.41157 -10.21756 -9.93683 -9.63309 -9.26820 -9.01933 -8.73499 -8.42206 -8.23861 -5.94788 -3.90350 2.04292 2.49416 2.73750 3.03720 3.39037 3.45385 3.49413 3.51100 3.79411 4.26544 4.35499 4.44615 4.52114 4.54971 4.66499 4.77083 4.85929 4.88992 4.94585 5.06763 5.12523 5.16530 5.20247 5.24964 5.28332 5.30118 5.41369 5.46811 5.52089 5.61473 5.72411 5.93979 5.99901 6.04549 6.14866 6.17546 6.29192 6.48688 6.55205 6.59368 6.75003 6.86125 6.91334 7.46257 7.49066 7.56860 7.80380 7.90787 8.38303 8.62168 9.09591 9.69035 11.18815 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.004731 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.727994 B = 5917.132229 C = 8394.303571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.512 6.512 5 C -0.076 4.076 6 H 0.106 0.894 7 C -0.140 4.140 8 C 0.037 3.963 9 N -0.453 5.453 10 C 0.002 3.998 11 C 0.110 3.890 12 C -0.008 4.008 13 C 0.063 3.937 14 O -0.368 6.368 15 C 0.048 3.952 16 C 0.480 3.520 17 O -0.528 6.528 18 N -0.575 5.575 19 C 0.129 3.871 20 C -0.017 4.017 21 C -0.505 4.505 22 H 0.071 0.929 23 C 0.070 3.930 24 N -0.906 5.906 25 Si 0.877 3.123 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.267 1.267 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.029 0.971 48 H 0.007 0.993 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.839 1.901 18.089 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.095 4.095 6 H 0.124 0.876 7 C -0.197 4.197 8 C -0.092 4.092 9 N -0.175 5.175 10 C -0.128 4.128 11 C 0.022 3.978 12 C -0.137 4.137 13 C -0.015 4.015 14 O -0.286 6.286 15 C -0.032 4.032 16 C 0.267 3.733 17 O -0.405 6.405 18 N -0.307 5.307 19 C 0.009 3.991 20 C -0.055 4.055 21 C -0.544 4.544 22 H 0.089 0.911 23 C -0.131 4.131 24 N -0.546 5.546 25 Si 0.706 3.294 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.192 1.192 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.145 0.855 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.047 0.953 48 H 0.025 0.975 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.305 1.842 17.030 21.689 hybrid contribution -0.888 1.107 0.134 1.426 sum -14.193 2.949 17.163 22.466 Atomic orbital electron populations 1.23257 0.76560 1.03649 1.02447 1.86529 1.23226 1.33514 1.83971 1.23951 0.92199 0.81188 0.71629 1.90657 1.67377 1.36382 1.45520 1.20986 0.86161 0.98874 1.03490 0.87567 1.21740 1.04396 0.99391 0.94149 1.22508 0.89675 0.93877 1.03112 1.68780 1.11053 1.12650 1.24970 1.24482 0.96888 0.91604 0.99819 1.22153 0.85222 0.96087 0.94370 1.24405 0.97140 0.99957 0.92234 1.22989 0.94032 0.90022 0.94471 1.88143 1.15850 1.31425 1.93188 1.22817 0.85433 0.97747 0.97175 1.20956 0.84376 0.83391 0.84588 1.90788 1.28676 1.64547 1.56467 1.47548 1.04005 1.38781 1.40364 1.21747 1.01834 0.88448 0.87033 1.19827 0.96797 0.97008 0.91873 1.20938 1.48221 0.95407 0.89844 0.91135 1.24910 0.94776 0.96765 0.96619 1.69909 1.50918 1.33042 1.00690 0.86819 0.78700 0.86351 0.77575 1.20566 1.21674 1.19186 0.92059 0.91890 0.88111 0.92220 0.88411 0.91972 0.93309 0.89326 0.90279 0.87836 0.87929 0.90131 0.91546 0.86926 0.85460 0.89751 0.91240 0.89705 0.95313 0.97457 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.92 10.47 -39.25 -0.41 -4.33 16 3 C 0.47 5.67 7.26 36.01 0.26 5.94 16 4 O -0.51 -7.32 15.67 -18.75 -0.29 -7.62 16 5 C -0.08 -0.85 2.84 -91.77 -0.26 -1.11 16 6 H 0.11 1.00 7.41 -51.93 -0.38 0.61 16 7 C -0.14 -1.81 9.01 37.16 0.33 -1.47 16 8 C 0.04 0.44 3.55 -3.83 -0.01 0.42 16 9 N -0.45 -5.90 4.11 -240.35 -0.99 -6.89 16 10 C 0.00 0.02 6.58 -2.94 -0.02 0.00 16 11 C 0.11 1.34 1.56 -135.16 -0.21 1.13 16 12 C -0.01 -0.08 5.59 -2.95 -0.02 -0.10 16 13 C 0.06 0.58 6.09 37.05 0.23 0.81 16 14 O -0.37 -4.30 10.84 -35.23 -0.38 -4.69 16 15 C 0.05 0.58 6.94 35.80 0.25 0.83 16 16 C 0.48 8.17 7.61 -11.42 -0.09 8.08 16 17 O -0.53 -11.39 16.55 5.55 0.09 -11.30 16 18 N -0.58 -9.42 2.66 -162.12 -0.43 -9.85 16 19 C 0.13 2.57 4.41 -4.04 -0.02 2.56 16 20 C -0.02 -0.41 4.13 -27.88 -0.12 -0.53 16 21 C -0.51 -14.44 9.66 -34.44 -0.33 -14.77 16 22 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 23 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 24 N -0.91 -28.26 13.96 55.43 0.77 -27.48 16 25 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.48 7.75 -51.93 -0.40 1.08 16 34 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.05 0.52 7.51 -51.93 -0.39 0.13 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 0.81 7.55 -51.93 -0.39 0.42 16 38 H 0.10 1.69 6.90 -51.93 -0.36 1.33 16 39 H 0.10 1.10 6.99 -51.93 -0.36 0.74 16 40 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 41 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 42 H 0.11 0.77 7.86 -51.93 -0.41 0.36 16 43 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.54 7.49 -51.93 -0.39 1.15 16 46 H 0.08 1.55 5.44 -51.93 -0.28 1.27 16 47 H 0.03 0.69 5.10 -51.93 -0.26 0.42 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -36.23 388.54 -7.31 -43.54 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.82 Total: -0.37 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 0.97 Total: 5.10 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.65 Total: -44.22 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.99 Total: -27.93 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.23 -7.31 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.123 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds