Wall clock time and date at job start Sat Apr 11 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99870 * 2 1 4 4 O 1.20829 * 120.00180 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00027 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46788 * 299.99922 * 5 3 2 7 7 C 1.52997 * 109.47414 * 59.99590 * 5 3 2 8 8 C 1.52998 * 109.47165 * 180.02562 * 5 3 2 9 9 N 1.46900 * 109.47025 * 174.99799 * 8 5 3 10 10 C 1.48042 * 111.00229 * 190.00015 * 9 8 5 11 11 C 1.53501 * 86.04638 * 137.28743 * 10 9 8 12 12 C 1.48052 * 111.00063 * 289.44047 * 9 8 5 13 13 C 1.52787 * 113.49415 * 222.17845 * 11 10 9 14 14 O 1.43377 * 108.24011 * 273.90394 * 13 11 10 15 15 C 1.42830 * 113.33746 * 294.34861 * 14 13 11 16 16 C 1.50277 * 110.49615 * 51.29358 * 15 14 13 17 17 O 1.21288 * 118.96574 * 161.62385 * 16 15 14 18 18 N 1.34263 * 122.05951 * 341.64816 * 16 15 14 19 19 C 1.46510 * 119.37696 * 181.93407 * 18 16 15 20 20 C 1.53003 * 109.46859 * 274.07937 * 19 18 16 21 21 C 1.50704 * 109.46959 * 174.90509 * 20 19 18 22 22 H 1.07997 * 119.99882 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99656 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99723 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00079 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46925 * 90.00162 * 25 23 21 27 27 H 1.48502 * 109.46744 * 209.99826 * 25 23 21 28 28 H 1.48497 * 109.47274 * 330.00064 * 25 23 21 29 29 H 1.08998 * 109.46766 * 299.99500 * 1 2 3 30 30 H 1.09000 * 109.47286 * 59.99482 * 1 2 3 31 31 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46872 * 60.00384 * 7 5 3 33 33 H 1.08996 * 109.47374 * 180.02562 * 7 5 3 34 34 H 1.09003 * 109.47218 * 300.00846 * 7 5 3 35 35 H 1.08997 * 109.46960 * 54.99922 * 8 5 3 36 36 H 1.08993 * 109.47290 * 294.99678 * 8 5 3 37 37 H 1.09002 * 113.78033 * 23.00647 * 10 9 8 38 38 H 1.09000 * 113.78114 * 251.57563 * 10 9 8 39 39 H 1.09000 * 113.77628 * 108.41819 * 12 9 8 40 40 H 1.08998 * 113.77656 * 336.99293 * 12 9 8 41 41 H 1.09002 * 109.72010 * 154.21265 * 13 11 10 42 42 H 1.08997 * 109.70097 * 33.58899 * 13 11 10 43 43 H 1.08998 * 109.27376 * 171.55702 * 15 14 13 44 44 H 1.09005 * 109.26560 * 291.03236 * 15 14 13 45 45 H 1.09001 * 109.47370 * 34.07620 * 19 18 16 46 46 H 1.08990 * 109.47219 * 154.08258 * 19 18 16 47 47 H 1.08995 * 109.46893 * 294.90537 * 20 19 18 48 48 H 1.08997 * 109.47300 * 54.90569 * 20 19 18 49 49 H 0.96996 * 119.99951 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8892 7 6 4.1129 0.5816 -1.2501 8 6 4.0001 2.7421 0.0002 9 7 5.4621 2.8204 0.1204 10 6 5.9005 4.2132 0.3642 11 6 6.8649 3.6160 1.3985 12 6 5.9052 2.4208 1.4753 13 6 6.9426 4.4210 2.6948 14 8 7.9189 5.4568 2.5220 15 6 9.2474 4.9599 2.3543 16 6 9.2857 3.9136 1.2763 17 8 10.3511 3.6300 0.7706 18 7 8.1775 3.2834 0.8550 19 6 8.2884 2.2425 -0.1700 20 6 8.2544 2.8871 -1.5572 21 6 8.4935 1.8327 -2.6070 22 1 8.6533 0.8055 -2.3141 23 6 8.5073 2.1792 -3.9415 24 7 8.7165 1.2592 -4.8576 25 14 8.2301 3.9557 -4.4480 26 1 9.5346 4.6629 -4.5067 27 1 7.5856 3.9943 -5.7853 28 1 7.3500 4.6221 -3.4548 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.7229 1.0758 -2.1399 33 1 5.2014 0.6382 -1.2503 34 1 3.8038 -0.4637 -1.2502 35 1 3.5382 3.2571 0.8425 36 1 3.6863 3.2143 -0.9307 37 1 5.1279 4.8476 0.7986 38 1 6.4001 4.6725 -0.4888 39 1 6.4083 1.4544 1.5059 40 1 5.1339 2.5248 2.2384 41 1 7.2403 3.7685 3.5156 42 1 5.9706 4.8643 2.9109 43 1 9.9075 5.7829 2.0805 44 1 9.5888 4.5225 3.2925 45 1 9.2280 1.7051 -0.0420 46 1 7.4554 1.5463 -0.0724 47 1 7.2800 3.3475 -1.7200 48 1 9.0316 3.6484 -1.6232 49 1 8.7258 1.5028 -5.7964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273415224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:41 Heat of formation + Delta-G solvation = -137.919154 kcal Electronic energy + Delta-G solvation = -31962.290261 eV Core-core repulsion = 27697.514284 eV Total energy + Delta-G solvation = -4264.775977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57220 -41.59555 -40.21088 -38.55525 -37.67810 -36.55421 -35.36904 -34.52538 -32.31913 -30.96685 -29.06562 -28.60462 -27.91279 -27.37632 -25.95919 -25.41029 -23.54509 -22.62936 -22.00959 -20.92294 -19.51860 -19.03760 -18.72494 -18.47785 -17.87455 -17.59768 -17.38420 -16.99027 -16.66730 -16.44615 -16.06756 -15.84624 -15.53067 -15.35618 -15.12104 -14.77759 -14.58450 -14.56601 -14.41675 -14.07627 -13.80998 -13.67919 -13.43870 -13.36883 -13.01949 -12.94216 -12.84312 -12.77031 -12.43841 -12.28905 -12.06222 -11.94552 -11.93605 -11.84575 -11.75676 -11.61159 -11.41941 -11.35679 -11.32656 -10.73884 -10.34218 -9.70392 -9.60120 -8.28267 -6.28063 1.11185 1.28817 1.30061 1.41113 1.45663 1.68428 1.85772 2.33638 2.67946 2.90209 3.08427 3.28445 3.44521 3.53886 3.59995 3.80374 3.87310 4.07277 4.20633 4.26037 4.30589 4.32819 4.33768 4.37713 4.44724 4.54873 4.55182 4.60452 4.66713 4.68256 4.70482 4.71509 4.85459 4.86228 4.95446 5.01300 5.04562 5.15791 5.30741 5.35823 5.49606 5.53544 5.56122 5.70824 5.84092 6.03131 6.29283 6.49485 6.67409 6.76601 7.08458 7.34704 8.88424 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.004731 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.727994 B = 5917.132229 C = 8394.303571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.069 4.069 6 H 0.132 0.868 7 C -0.134 4.134 8 C 0.045 3.955 9 N -0.488 5.488 10 C 0.002 3.998 11 C 0.101 3.899 12 C 0.006 3.994 13 C 0.064 3.936 14 O -0.374 6.374 15 C 0.062 3.938 16 C 0.469 3.531 17 O -0.588 6.588 18 N -0.576 5.576 19 C 0.147 3.853 20 C -0.001 4.001 21 C -0.511 4.511 22 H 0.038 0.962 23 C 0.015 3.985 24 N -0.947 5.947 25 Si 0.938 3.062 26 H -0.281 1.281 27 H -0.280 1.280 28 H -0.253 1.253 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.038 0.962 46 H 0.101 0.899 47 H 0.035 0.965 48 H -0.020 1.020 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.155 3.172 21.280 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.088 4.088 6 H 0.150 0.850 7 C -0.191 4.191 8 C -0.084 4.084 9 N -0.211 5.211 10 C -0.128 4.128 11 C 0.014 3.986 12 C -0.123 4.123 13 C -0.012 4.012 14 O -0.292 6.292 15 C -0.018 4.018 16 C 0.259 3.741 17 O -0.468 6.468 18 N -0.307 5.307 19 C 0.025 3.975 20 C -0.039 4.039 21 C -0.549 4.549 22 H 0.057 0.943 23 C -0.182 4.182 24 N -0.588 5.588 25 Si 0.763 3.237 26 H -0.207 1.207 27 H -0.205 1.205 28 H -0.177 1.177 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.166 0.834 43 H 0.152 0.848 44 H 0.137 0.863 45 H 0.057 0.943 46 H 0.119 0.881 47 H 0.054 0.946 48 H -0.001 1.001 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.668 3.115 20.258 25.799 hybrid contribution -0.222 0.591 -0.880 1.083 sum -15.890 3.706 19.379 25.333 Atomic orbital electron populations 1.23549 0.74850 1.05664 1.02514 1.86516 1.24949 1.32817 1.83509 1.23987 0.92326 0.81159 0.70931 1.90647 1.67920 1.37179 1.46808 1.20935 0.85847 0.98662 1.03350 0.84989 1.21613 1.02597 1.00196 0.94694 1.22400 0.89190 0.94091 1.02708 1.68720 1.11897 1.13058 1.27431 1.24460 0.97780 0.91895 0.98648 1.22540 0.82936 0.97653 0.95517 1.24465 0.97230 0.98755 0.91857 1.23304 0.95176 0.89764 0.93005 1.88151 1.15754 1.32334 1.92980 1.22771 0.86362 0.96290 0.96347 1.22054 0.83442 0.83626 0.85012 1.90756 1.30882 1.66473 1.58738 1.47533 1.06207 1.37664 1.39252 1.21213 1.00891 0.89319 0.86111 1.19622 0.95768 0.95104 0.93430 1.21249 1.47388 0.95111 0.91185 0.94348 1.25724 0.94728 1.00971 0.96744 1.70036 1.52399 1.35226 1.01173 0.85847 0.78744 0.81229 0.77863 1.20673 1.20514 1.17715 0.91441 0.92414 0.85210 0.93969 0.90943 0.90943 0.91219 0.91816 0.86930 0.92019 0.88493 0.85695 0.88863 0.83392 0.84775 0.86348 0.94320 0.88101 0.94643 1.00128 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.24 10.47 -51.40 -0.54 -7.78 16 3 C 0.47 10.59 7.26 71.24 0.52 11.11 16 4 O -0.54 -14.44 15.67 21.95 0.34 -14.10 16 5 C -0.07 -1.41 2.84 -11.54 -0.03 -1.45 16 6 H 0.13 2.04 7.41 -2.39 -0.02 2.02 16 7 C -0.13 -3.46 9.01 71.98 0.65 -2.81 16 8 C 0.04 0.97 3.55 86.30 0.31 1.27 16 9 N -0.49 -11.87 4.11 -914.33 -3.76 -15.63 16 10 C 0.00 0.04 6.58 86.25 0.57 0.61 16 11 C 0.10 2.14 1.56 5.17 0.01 2.15 16 12 C 0.01 0.10 5.59 86.24 0.48 0.58 16 13 C 0.06 0.86 6.09 71.91 0.44 1.30 16 14 O -0.37 -7.23 10.84 -148.98 -1.61 -8.84 16 15 C 0.06 1.33 6.94 71.10 0.49 1.82 16 16 C 0.47 15.75 7.61 87.60 0.67 16.42 16 17 O -0.59 -26.19 16.55 -3.05 -0.05 -26.24 16 18 N -0.58 -18.49 2.66 -785.50 -2.09 -20.59 16 19 C 0.15 6.02 4.41 86.38 0.38 6.40 16 20 C 0.00 -0.05 4.13 29.85 0.12 0.07 16 21 C -0.51 -30.56 9.66 25.60 0.25 -30.31 16 22 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 23 C 0.02 0.93 5.47 84.66 0.46 1.39 16 24 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 25 Si 0.94 47.93 27.47 68.60 1.88 49.81 16 26 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.25 -12.24 6.54 99.48 0.65 -11.59 16 29 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.06 0.86 8.13 -2.39 -0.02 0.85 16 31 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 34 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 35 H 0.07 1.22 7.51 -2.39 -0.02 1.20 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.11 1.86 7.55 -2.39 -0.02 1.85 16 38 H 0.06 1.99 6.90 -2.39 -0.02 1.97 16 39 H 0.10 1.81 6.99 -2.39 -0.02 1.79 16 40 H 0.13 1.07 7.73 -2.39 -0.02 1.05 16 41 H 0.09 0.84 8.13 -2.39 -0.02 0.82 16 42 H 0.15 1.02 7.86 -2.39 -0.02 1.00 16 43 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.04 1.81 7.49 -2.39 -0.02 1.79 16 46 H 0.10 3.77 5.44 -2.39 -0.01 3.76 16 47 H 0.04 1.74 5.10 -2.39 -0.01 1.73 16 48 H -0.02 -1.10 7.57 -2.39 -0.02 -1.11 16 49 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -84.70 388.54 1.87 -82.83 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.89 Total: 11.21 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.51 Total: 10.12 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -5.55 Total: -97.02 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -1.86 Total: -56.96 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.88 Total: 49.81 kcal Total: -84.70 1.87 -82.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.092 kcal (2) G-P(sol) polarization free energy of solvation -84.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds