Wall clock time and date at job start Sat Apr 11 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34230 * 117.00313 * 2 1 4 4 O 1.20828 * 119.99295 * 359.97438 * 3 2 1 5 5 C 1.50687 * 119.99981 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47829 * 300.00204 * 5 3 2 7 7 C 1.53007 * 109.47236 * 60.00307 * 5 3 2 8 8 C 1.53006 * 109.47292 * 179.97438 * 5 3 2 9 9 N 1.46896 * 109.47123 * 175.00236 * 8 5 3 10 10 C 1.48073 * 110.99646 * 190.00117 * 9 8 5 11 11 C 1.53382 * 86.02382 * 222.76582 * 10 9 8 12 12 C 1.48056 * 110.99997 * 90.55307 * 9 8 5 13 13 C 1.52555 * 113.83772 * 138.14648 * 11 10 9 14 14 N 1.46273 * 109.56610 * 176.52122 * 13 11 10 15 15 C 1.46506 * 118.71382 * 163.89767 * 14 13 11 16 16 C 1.53002 * 109.47035 * 90.00187 * 15 14 13 17 17 C 1.50696 * 109.47300 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46691 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 120.00050 * 21 19 17 24 24 H 1.48500 * 109.46740 * 240.00408 * 21 19 17 25 25 C 1.33712 * 122.57058 * 344.17860 * 14 13 11 26 26 O 1.21279 * 118.38756 * 182.95630 * 25 14 13 27 27 C 1.50152 * 123.25113 * 2.72367 * 25 14 13 28 28 O 1.42688 * 113.79134 * 268.80359 * 11 10 9 29 29 H 1.08994 * 109.46814 * 300.00403 * 1 2 3 30 30 H 1.09000 * 109.46982 * 59.99942 * 1 2 3 31 31 H 1.08994 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47259 * 59.99428 * 7 5 3 33 33 H 1.08996 * 109.47214 * 179.97438 * 7 5 3 34 34 H 1.09002 * 109.47049 * 299.99837 * 7 5 3 35 35 H 1.08997 * 109.46568 * 55.00136 * 8 5 3 36 36 H 1.08998 * 109.47026 * 295.00856 * 8 5 3 37 37 H 1.09002 * 113.78012 * 108.48787 * 10 9 8 38 38 H 1.08997 * 113.88611 * 337.06048 * 10 9 8 39 39 H 1.09003 * 113.78588 * 22.95365 * 12 9 8 40 40 H 1.09005 * 113.78666 * 251.50493 * 12 9 8 41 41 H 1.08990 * 109.45789 * 56.48985 * 13 11 10 42 42 H 1.09006 * 109.43769 * 296.53741 * 13 11 10 43 43 H 1.09004 * 109.47073 * 209.99870 * 15 14 13 44 44 H 1.09000 * 109.47212 * 329.99952 * 15 14 13 45 45 H 1.09004 * 109.46930 * 299.99770 * 16 15 14 46 46 H 1.09004 * 109.47059 * 59.99372 * 16 15 14 47 47 H 0.97000 * 120.00540 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.48247 * 222.46165 * 27 25 14 49 49 H 1.08997 * 109.03826 * 102.86309 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.1139 0.5809 -1.2484 8 6 4.0003 2.7420 -0.0002 9 7 5.4621 2.8203 0.1210 10 6 5.9005 4.2137 0.3635 11 6 7.0155 3.9262 -0.6498 12 6 6.1055 2.8269 -1.2124 13 6 7.2731 5.0712 -1.6244 14 7 8.4027 4.7331 -2.4899 15 6 8.6048 5.5063 -3.7178 16 6 9.5076 6.7058 -3.4224 17 6 9.7160 7.5008 -4.6855 18 1 9.2515 7.1822 -5.6069 19 6 10.4997 8.6350 -4.6648 20 7 11.0658 9.0227 -3.5429 21 14 10.7575 9.6208 -6.2304 22 1 10.0189 8.9785 -7.3471 23 1 10.2533 11.0036 -6.0333 24 1 12.2059 9.6636 -6.5555 25 6 9.2549 3.7423 -2.2070 26 8 10.1969 3.5624 -2.9494 27 6 9.1064 2.8444 -1.0128 28 8 8.2167 3.4320 -0.0592 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.7245 1.0748 -2.1386 33 1 5.2023 0.6383 -1.2482 34 1 3.8048 -0.4643 -1.2483 35 1 3.5377 3.2580 0.8411 36 1 3.6871 3.2130 -0.9319 37 1 6.2620 4.3908 1.3765 38 1 5.1858 4.9657 0.0293 39 1 5.4506 3.1663 -2.0149 40 1 6.6301 1.9019 -1.4520 41 1 7.5024 5.9787 -1.0660 42 1 6.3847 5.2351 -2.2345 43 1 9.0750 4.8747 -4.4717 44 1 7.6421 5.8586 -4.0880 45 1 9.0374 7.3374 -2.6685 46 1 10.4703 6.3535 -3.0521 47 1 11.6176 9.8204 -3.5283 48 1 10.0813 2.6904 -0.5502 49 1 8.7050 1.8845 -1.3374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273415561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:47 Heat of formation + Delta-G solvation = -117.717512 kcal Electronic energy + Delta-G solvation = -30438.418001 eV Core-core repulsion = 26174.518033 eV Total energy + Delta-G solvation = -4263.899968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55716 -40.86951 -39.34129 -37.22988 -36.68506 -35.48176 -34.51295 -33.05530 -30.53612 -29.73679 -28.20612 -27.96418 -26.95243 -26.27827 -24.76703 -24.54739 -22.76033 -21.55424 -20.52018 -20.16549 -18.40523 -18.01031 -17.54458 -17.22445 -16.88425 -16.72652 -16.19341 -16.00866 -15.74271 -15.28693 -15.12177 -14.55369 -14.40125 -14.33800 -14.14545 -13.76963 -13.43414 -13.36064 -13.07733 -12.92017 -12.83739 -12.71489 -12.56398 -12.35568 -12.31608 -12.11017 -11.52676 -11.46590 -11.33309 -11.29465 -11.22229 -11.01573 -10.90872 -10.72710 -10.65434 -10.20913 -9.91817 -9.84644 -9.35614 -9.21607 -8.95615 -8.36762 -8.13663 -6.01482 -4.04798 1.79166 2.22965 2.86628 3.11184 3.30747 3.34181 3.38521 3.42408 3.55136 4.08422 4.20428 4.23372 4.39106 4.44353 4.46801 4.66598 4.68349 4.74705 4.81711 4.91922 4.95366 5.05552 5.06714 5.11922 5.19623 5.23537 5.34602 5.35883 5.38542 5.44558 5.47015 5.50394 5.56037 5.73270 5.78914 5.89680 5.98489 6.03820 6.46771 6.54137 6.66601 6.82099 6.87709 7.31691 7.57705 7.69956 7.90385 7.98562 8.33733 8.49109 9.01911 9.59044 11.09953 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.002191 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.663488 B =12778.685011 C =13423.743820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.074 4.074 6 H 0.119 0.881 7 C -0.149 4.149 8 C 0.032 3.968 9 N -0.466 5.466 10 C 0.029 3.971 11 C 0.072 3.928 12 C -0.021 4.021 13 C 0.099 3.901 14 N -0.596 5.596 15 C 0.114 3.886 16 C 0.014 3.986 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.479 3.521 26 O -0.538 6.538 27 C 0.052 3.948 28 O -0.334 6.334 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.015 0.985 46 H 0.023 0.977 47 H 0.260 0.740 48 H 0.130 0.870 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.916 -18.712 10.286 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.395 6.395 5 C -0.093 4.093 6 H 0.137 0.863 7 C -0.206 4.206 8 C -0.097 4.097 9 N -0.189 5.189 10 C -0.100 4.100 11 C 0.030 3.970 12 C -0.149 4.149 13 C -0.025 4.025 14 N -0.329 5.329 15 C -0.007 4.007 16 C -0.024 4.024 17 C -0.559 4.559 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.265 3.735 26 O -0.416 6.416 27 C -0.027 4.027 28 O -0.252 6.252 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.033 0.967 46 H 0.041 0.959 47 H 0.070 0.930 48 H 0.148 0.852 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.377 -18.891 10.647 29.081 hybrid contribution -0.482 1.338 -1.551 2.105 sum -19.860 -17.553 9.096 28.022 Atomic orbital electron populations 1.23286 0.76245 1.03780 1.02624 1.86510 1.23474 1.33440 1.83980 1.23857 0.92090 0.81309 0.71902 1.90681 1.67308 1.36357 1.45192 1.20916 0.86316 0.98903 1.03195 0.86312 1.21897 1.02819 1.00791 0.95100 1.22548 0.90021 0.94179 1.02926 1.68487 1.07104 1.22553 1.20719 1.23956 0.93751 0.90888 1.01410 1.22904 0.86365 0.93446 0.94236 1.24768 0.97364 1.00418 0.92398 1.21974 0.90291 0.97910 0.92316 1.47678 1.27420 1.33094 1.24711 1.21961 1.00451 0.94319 0.83961 1.19353 0.94863 0.90903 0.97253 1.21116 1.30465 1.09159 0.95171 0.92502 1.25009 0.95597 0.97536 0.96224 1.69985 1.32591 1.24698 1.25837 0.86498 0.78003 0.79823 0.83441 1.19701 1.21021 1.20955 1.20682 0.82911 0.81959 0.87911 1.90765 1.29912 1.70908 1.49992 1.22797 0.96135 0.95419 0.88364 1.88112 1.27729 1.77723 1.31636 0.91835 0.91857 0.88006 0.92361 0.90031 0.91195 0.89502 0.92479 0.87367 0.89049 0.89665 0.88394 0.89998 0.89779 0.90623 0.91838 0.96672 0.95883 0.93003 0.85235 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.87 10.47 -39.26 -0.41 -3.28 16 3 C 0.47 4.19 7.25 36.00 0.26 4.45 16 4 O -0.51 -5.89 15.67 -18.75 -0.29 -6.18 16 5 C -0.07 -0.54 3.04 -91.77 -0.28 -0.82 16 6 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.15 -0.97 8.45 37.16 0.31 -0.66 16 8 C 0.03 0.26 3.75 -3.82 -0.01 0.24 16 9 N -0.47 -4.04 6.04 -240.93 -1.45 -5.49 16 10 C 0.03 0.25 7.35 -2.99 -0.02 0.23 16 11 C 0.07 0.79 1.16 -90.52 -0.10 0.69 16 12 C -0.02 -0.19 5.27 -2.98 -0.02 -0.20 16 13 C 0.10 1.31 5.88 -4.39 -0.03 1.29 16 14 N -0.60 -10.45 2.84 -174.67 -0.50 -10.95 16 15 C 0.11 2.38 5.21 -4.04 -0.02 2.36 16 16 C 0.01 0.37 5.29 -27.88 -0.15 0.23 16 17 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.48 8.60 7.57 -11.72 -0.09 8.51 16 26 O -0.54 -12.04 16.33 5.56 0.09 -11.95 16 27 C 0.05 0.68 6.65 35.74 0.24 0.92 16 28 O -0.33 -4.34 10.66 -35.23 -0.38 -4.72 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.54 5.64 -51.93 -0.29 0.24 16 34 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 35 H 0.09 0.72 7.89 -51.93 -0.41 0.31 16 36 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 39 H 0.09 0.70 7.25 -51.93 -0.38 0.32 16 40 H 0.10 0.86 5.97 -51.93 -0.31 0.55 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.08 0.93 7.77 -51.93 -0.40 0.53 16 43 H 0.08 1.70 7.28 -51.93 -0.38 1.32 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 49 H 0.08 0.90 7.15 -51.93 -0.37 0.53 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -35.96 395.89 -8.45 -44.40 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.94 Total: -3.05 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 0.75 Total: 4.91 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -1.21 Total: -42.91 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.99 Total: -26.13 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.96 -8.45 -44.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.316 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds