Wall clock time and date at job start Sat Apr 11 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34230 * 117.00313 * 2 1 4 4 O 1.20828 * 119.99295 * 359.97438 * 3 2 1 5 5 C 1.50687 * 119.99981 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47829 * 300.00204 * 5 3 2 7 7 C 1.53007 * 109.47236 * 60.00307 * 5 3 2 8 8 C 1.53006 * 109.47292 * 179.97438 * 5 3 2 9 9 N 1.46896 * 109.47123 * 175.00236 * 8 5 3 10 10 C 1.48073 * 110.99646 * 190.00117 * 9 8 5 11 11 C 1.53382 * 86.02382 * 222.76582 * 10 9 8 12 12 C 1.48056 * 110.99997 * 90.55307 * 9 8 5 13 13 C 1.52555 * 113.83772 * 138.14648 * 11 10 9 14 14 N 1.46273 * 109.56610 * 176.52122 * 13 11 10 15 15 C 1.46506 * 118.71382 * 163.89767 * 14 13 11 16 16 C 1.53002 * 109.47035 * 90.00187 * 15 14 13 17 17 C 1.50696 * 109.47300 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46691 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 120.00050 * 21 19 17 24 24 H 1.48500 * 109.46740 * 240.00408 * 21 19 17 25 25 C 1.33712 * 122.57058 * 344.17860 * 14 13 11 26 26 O 1.21279 * 118.38756 * 182.95630 * 25 14 13 27 27 C 1.50152 * 123.25113 * 2.72367 * 25 14 13 28 28 O 1.42688 * 113.79134 * 268.80359 * 11 10 9 29 29 H 1.08994 * 109.46814 * 300.00403 * 1 2 3 30 30 H 1.09000 * 109.46982 * 59.99942 * 1 2 3 31 31 H 1.08994 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47259 * 59.99428 * 7 5 3 33 33 H 1.08996 * 109.47214 * 179.97438 * 7 5 3 34 34 H 1.09002 * 109.47049 * 299.99837 * 7 5 3 35 35 H 1.08997 * 109.46568 * 55.00136 * 8 5 3 36 36 H 1.08998 * 109.47026 * 295.00856 * 8 5 3 37 37 H 1.09002 * 113.78012 * 108.48787 * 10 9 8 38 38 H 1.08997 * 113.88611 * 337.06048 * 10 9 8 39 39 H 1.09003 * 113.78588 * 22.95365 * 12 9 8 40 40 H 1.09005 * 113.78666 * 251.50493 * 12 9 8 41 41 H 1.08990 * 109.45789 * 56.48985 * 13 11 10 42 42 H 1.09006 * 109.43769 * 296.53741 * 13 11 10 43 43 H 1.09004 * 109.47073 * 209.99870 * 15 14 13 44 44 H 1.09000 * 109.47212 * 329.99952 * 15 14 13 45 45 H 1.09004 * 109.46930 * 299.99770 * 16 15 14 46 46 H 1.09004 * 109.47059 * 59.99372 * 16 15 14 47 47 H 0.97000 * 120.00540 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.48247 * 222.46165 * 27 25 14 49 49 H 1.08997 * 109.03826 * 102.86309 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.1139 0.5809 -1.2484 8 6 4.0003 2.7420 -0.0002 9 7 5.4621 2.8203 0.1210 10 6 5.9005 4.2137 0.3635 11 6 7.0155 3.9262 -0.6498 12 6 6.1055 2.8269 -1.2124 13 6 7.2731 5.0712 -1.6244 14 7 8.4027 4.7331 -2.4899 15 6 8.6048 5.5063 -3.7178 16 6 9.5076 6.7058 -3.4224 17 6 9.7160 7.5008 -4.6855 18 1 9.2515 7.1822 -5.6069 19 6 10.4997 8.6350 -4.6648 20 7 11.0658 9.0227 -3.5429 21 14 10.7575 9.6208 -6.2304 22 1 10.0189 8.9785 -7.3471 23 1 10.2533 11.0036 -6.0333 24 1 12.2059 9.6636 -6.5555 25 6 9.2549 3.7423 -2.2070 26 8 10.1969 3.5624 -2.9494 27 6 9.1064 2.8444 -1.0128 28 8 8.2167 3.4320 -0.0592 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.7245 1.0748 -2.1386 33 1 5.2023 0.6383 -1.2482 34 1 3.8048 -0.4643 -1.2483 35 1 3.5377 3.2580 0.8411 36 1 3.6871 3.2130 -0.9319 37 1 6.2620 4.3908 1.3765 38 1 5.1858 4.9657 0.0293 39 1 5.4506 3.1663 -2.0149 40 1 6.6301 1.9019 -1.4520 41 1 7.5024 5.9787 -1.0660 42 1 6.3847 5.2351 -2.2345 43 1 9.0750 4.8747 -4.4717 44 1 7.6421 5.8586 -4.0880 45 1 9.0374 7.3374 -2.6685 46 1 10.4703 6.3535 -3.0521 47 1 11.6176 9.8204 -3.5283 48 1 10.0813 2.6904 -0.5502 49 1 8.7050 1.8845 -1.3374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273415561.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:47 Heat of formation + Delta-G solvation = -144.683043 kcal Electronic energy + Delta-G solvation = -30439.587314 eV Core-core repulsion = 26174.518033 eV Total energy + Delta-G solvation = -4265.069281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46640 -41.60388 -40.52940 -38.10359 -37.49327 -37.00505 -35.27947 -35.05066 -32.18581 -30.86323 -29.01811 -28.68837 -28.12572 -27.01651 -26.35643 -25.47322 -23.77328 -23.10548 -21.32995 -21.14034 -19.55892 -18.77310 -18.67266 -18.56757 -17.89247 -17.55690 -17.39770 -17.15256 -16.79017 -16.52234 -16.18472 -16.01743 -15.53823 -15.18220 -14.91126 -14.89185 -14.57745 -14.41703 -14.28037 -14.10330 -13.92761 -13.80983 -13.39300 -13.32114 -13.24626 -13.01875 -12.90665 -12.87630 -12.58507 -12.50626 -12.10388 -12.04368 -11.91136 -11.86183 -11.80005 -11.68596 -11.46891 -11.39348 -11.10975 -10.61212 -10.40551 -9.90518 -9.64535 -8.24026 -6.36716 1.12672 1.37996 1.39851 1.47597 1.53154 1.67422 1.86488 2.38261 2.42034 2.81518 3.09442 3.21430 3.31903 3.57187 3.63165 3.80379 3.85196 4.06757 4.14191 4.22745 4.26583 4.28535 4.32073 4.33073 4.35709 4.42684 4.51967 4.57825 4.59488 4.66415 4.68426 4.71338 4.75991 4.81613 4.91450 4.92176 5.01091 5.15480 5.23825 5.27602 5.39424 5.42987 5.55572 5.77305 5.82641 5.91079 6.14910 6.43800 6.67513 6.79065 7.06951 7.32948 8.88374 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.002191 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.663488 B =12778.685011 C =13423.743820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.539 6.539 5 C -0.070 4.070 6 H 0.128 0.872 7 C -0.145 4.145 8 C 0.036 3.964 9 N -0.466 5.466 10 C 0.034 3.966 11 C 0.064 3.936 12 C -0.013 4.013 13 C 0.094 3.906 14 N -0.598 5.598 15 C 0.129 3.871 16 C 0.025 3.975 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.282 1.282 25 C 0.470 3.530 26 O -0.592 6.592 27 C 0.064 3.936 28 O -0.343 6.343 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.091 0.909 45 H -0.003 1.003 46 H -0.027 1.027 47 H 0.264 0.736 48 H 0.138 0.862 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.839 -19.731 9.896 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.429 6.429 5 C -0.090 4.090 6 H 0.146 0.854 7 C -0.202 4.202 8 C -0.093 4.093 9 N -0.189 5.189 10 C -0.094 4.094 11 C 0.023 3.977 12 C -0.141 4.141 13 C -0.029 4.029 14 N -0.329 5.329 15 C 0.007 3.993 16 C -0.013 4.013 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.208 1.208 25 C 0.259 3.741 26 O -0.474 6.474 27 C -0.015 4.015 28 O -0.261 6.261 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.015 0.985 46 H -0.009 1.009 47 H 0.073 0.927 48 H 0.155 0.845 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.347 -19.935 10.288 30.967 hybrid contribution 0.071 1.645 -1.364 2.138 sum -21.276 -18.290 8.924 29.442 Atomic orbital electron populations 1.23536 0.74963 1.05658 1.02431 1.86505 1.24813 1.32901 1.83551 1.24162 0.92655 0.81094 0.70916 1.90668 1.68090 1.37330 1.46824 1.20926 0.85287 0.98681 1.04058 0.85424 1.21874 1.02814 1.01046 0.94459 1.22498 0.89427 0.94626 1.02723 1.68497 1.07486 1.22377 1.20503 1.24033 0.92949 0.91587 1.00858 1.23087 0.86283 0.93510 0.94822 1.24789 0.96765 0.99730 0.92857 1.22282 0.89543 0.98574 0.92474 1.47727 1.28601 1.32393 1.24200 1.21517 1.00275 0.92212 0.85338 1.19160 0.93400 0.92609 0.96100 1.21576 1.30690 1.09629 0.96120 0.91513 1.26048 0.95112 0.98864 1.00004 1.70128 1.33345 1.25405 1.28447 0.85306 0.77911 0.78258 0.78995 1.18171 1.19926 1.20810 1.21675 0.81742 0.82066 0.88626 1.90733 1.32077 1.72498 1.52109 1.22773 0.97177 0.95190 0.86320 1.88114 1.28445 1.77852 1.31650 0.91993 0.92138 0.85157 0.92534 0.89769 0.90570 0.89900 0.92556 0.87332 0.87260 0.88427 0.87766 0.91340 0.87089 0.92374 0.89044 0.98478 1.00864 0.92747 0.84461 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.20 10.47 -51.42 -0.54 -5.74 16 3 C 0.47 7.73 7.25 71.23 0.52 8.25 16 4 O -0.54 -12.00 15.67 21.96 0.34 -11.66 16 5 C -0.07 -0.88 3.04 -11.54 -0.04 -0.92 16 6 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 7 C -0.14 -1.53 8.45 71.98 0.61 -0.92 16 8 C 0.04 0.49 3.75 86.31 0.32 0.82 16 9 N -0.47 -6.84 6.04 -920.45 -5.56 -12.40 16 10 C 0.03 0.52 7.35 86.20 0.63 1.16 16 11 C 0.06 1.28 1.16 -10.65 -0.01 1.27 16 12 C -0.01 -0.19 5.27 86.21 0.45 0.26 16 13 C 0.09 2.38 5.88 86.27 0.51 2.89 16 14 N -0.60 -20.98 2.84 -825.53 -2.34 -23.32 16 15 C 0.13 5.46 5.21 86.38 0.45 5.91 16 16 C 0.03 1.39 5.29 29.85 0.16 1.55 16 17 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 21 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 C 0.47 17.02 7.57 87.65 0.66 17.68 16 26 O -0.59 -27.50 16.33 -3.03 -0.05 -27.55 16 27 C 0.06 1.61 6.65 71.06 0.47 2.08 16 28 O -0.34 -8.34 10.66 -148.98 -1.59 -9.93 16 29 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.86 5.64 -2.39 -0.01 0.85 16 34 H 0.08 0.72 8.11 -2.39 -0.02 0.70 16 35 H 0.08 1.23 7.89 -2.39 -0.02 1.21 16 36 H 0.06 0.80 7.38 -2.39 -0.02 0.78 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 1.29 7.88 -2.39 -0.02 1.27 16 39 H 0.10 1.26 7.25 -2.39 -0.02 1.25 16 40 H 0.10 1.48 5.97 -2.38 -0.01 1.47 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.11 2.19 7.77 -2.38 -0.02 2.18 16 43 H 0.06 2.67 7.28 -2.38 -0.02 2.65 16 44 H 0.09 3.34 7.96 -2.39 -0.02 3.32 16 45 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 46 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 47 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 48 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.12 2.20 7.15 -2.39 -0.02 2.18 16 Total: -1.00 -80.93 395.89 0.16 -80.78 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.94 Total: 10.35 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.63 Total: 10.60 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -7.61 Total: -93.82 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -1.83 Total: -54.88 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -80.93 0.16 -80.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415561.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.904 kcal (2) G-P(sol) polarization free energy of solvation -80.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds