Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46934 * 2 1 4 4 O 1.45197 * 109.47344 * 120.00225 * 2 1 3 5 5 C 1.34232 * 116.99692 * 150.00162 * 4 2 1 6 6 O 1.20820 * 120.00422 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99917 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.47279 * 179.97438 * 7 5 4 9 9 C 1.46204 * 118.77692 * 269.98208 * 8 7 5 10 10 C 1.52412 * 109.94929 * 162.50104 * 9 8 7 11 11 C 1.53779 * 110.32798 * 285.73608 * 10 9 8 12 12 C 1.54496 * 104.88598 * 240.98733 * 11 10 9 13 13 N 1.48611 * 104.71649 * 336.18009 * 12 11 10 14 14 C 1.46900 * 110.99708 * 158.83314 * 13 12 11 15 15 C 1.50695 * 109.47433 * 69.87540 * 14 13 12 16 16 H 1.08007 * 119.99642 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00158 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00070 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47266 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47424 * 119.99997 * 19 17 15 22 22 H 1.48508 * 109.47185 * 239.99804 * 19 17 15 23 23 C 1.48967 * 104.14573 * 39.16084 * 13 12 11 24 24 O 1.42573 * 110.12821 * 47.67922 * 10 9 8 25 25 C 1.43030 * 113.17233 * 293.27194 * 24 10 9 26 26 C 1.33843 * 118.77282 * 89.99786 * 8 7 5 27 27 O 1.21278 * 118.69525 * 2.40449 * 26 8 7 28 28 H 1.08999 * 109.46639 * 299.99379 * 1 2 3 29 29 H 1.08992 * 109.47624 * 59.99730 * 1 2 3 30 30 H 1.09002 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47160 * 240.00650 * 2 1 3 32 32 H 1.08996 * 109.47533 * 300.00867 * 3 2 1 33 33 H 1.09006 * 109.47266 * 60.00544 * 3 2 1 34 34 H 1.09006 * 109.47267 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46849 * 59.99801 * 7 5 4 36 36 H 1.08991 * 109.46984 * 300.00070 * 7 5 4 37 37 H 1.09004 * 109.39118 * 42.35297 * 9 8 7 38 38 H 1.08999 * 109.38774 * 282.65127 * 9 8 7 39 39 H 1.09004 * 110.35308 * 122.13055 * 11 10 9 40 40 H 1.08994 * 110.35581 * 359.84182 * 11 10 9 41 41 H 1.09002 * 110.40824 * 95.02356 * 12 11 10 42 42 H 1.09002 * 110.40727 * 217.33888 * 12 11 10 43 43 H 1.08998 * 109.46661 * 189.87436 * 14 13 12 44 44 H 1.09004 * 109.47100 * 309.87130 * 14 13 12 45 45 H 0.96998 * 120.00395 * 180.02562 * 18 17 15 46 46 H 1.09000 * 110.41002 * 202.22406 * 23 13 12 47 47 H 1.09000 * 110.41229 * 79.75947 * 23 13 12 48 48 H 1.09008 * 109.39806 * 168.79504 * 25 24 10 49 49 H 1.08997 * 109.40651 * 288.52929 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 3.1938 -1.3170 1.0849 6 8 3.8015 -1.2996 0.0409 7 6 3.7602 -2.0488 2.2744 8 7 5.0454 -2.6507 1.9108 9 6 5.0583 -4.0079 1.3674 10 6 6.3857 -4.2753 0.6677 11 6 6.4379 -3.5357 -0.6795 12 6 6.5934 -4.6501 -1.7383 13 7 7.1979 -5.7898 -1.0007 14 6 6.9560 -7.0580 -1.7016 15 6 7.7645 -7.0915 -2.9729 16 1 8.3947 -6.2542 -3.2343 17 6 7.6998 -8.1910 -3.8023 18 7 6.9328 -9.2107 -3.4838 19 14 8.7026 -8.2327 -5.3778 20 1 9.4777 -6.9724 -5.5048 21 1 9.6362 -9.3869 -5.3399 22 1 7.7905 -8.3718 -6.5415 23 6 6.5158 -5.7694 0.3235 24 8 7.4695 -3.8652 1.4984 25 6 7.5218 -2.4498 1.6974 26 6 6.1641 -1.9376 2.0888 27 8 6.0787 -0.8348 2.5861 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6766 1.9564 -0.8898 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4426 0.0005 35 1 3.0672 -2.8314 2.5832 36 1 3.9063 -1.3479 3.0962 37 1 4.2433 -4.1191 0.6522 38 1 4.9262 -4.7237 2.1787 39 1 7.2944 -2.8621 -0.7093 40 1 5.5134 -2.9824 -0.8443 41 1 5.6199 -4.9309 -2.1403 42 1 7.2549 -4.3227 -2.5403 43 1 7.2514 -7.8891 -1.0612 44 1 5.8964 -7.1437 -1.9425 45 1 6.8875 -9.9843 -4.0671 46 1 7.1219 -6.2808 1.0712 47 1 5.5307 -6.2304 0.2508 48 1 8.2367 -2.2215 2.4880 49 1 7.8389 -1.9657 0.7737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = -143.420070 kcal Electronic energy + Delta-G solvation = -31266.830243 eV Core-core repulsion = 27001.815729 eV Total energy + Delta-G solvation = -4265.014514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47433 -40.50024 -38.83850 -37.18977 -36.48251 -35.52482 -33.52829 -32.99062 -31.15420 -29.64447 -29.46007 -27.67273 -27.13457 -26.55012 -25.03833 -23.02957 -22.62437 -21.27937 -20.65481 -20.35894 -18.49992 -18.28475 -17.84438 -17.17184 -16.65422 -16.41881 -16.28441 -15.90679 -15.47269 -15.12905 -14.76629 -14.52869 -14.31174 -13.98420 -13.89580 -13.64852 -13.58826 -13.52083 -13.26950 -12.77555 -12.69009 -12.50954 -12.40725 -12.35585 -12.05186 -11.92351 -11.70117 -11.38928 -11.28949 -11.07133 -10.98269 -10.93815 -10.82032 -10.62148 -10.61212 -10.42035 -10.29107 -9.91785 -9.49569 -9.21401 -9.12012 -8.46742 -7.47706 -6.06000 -4.07020 1.91284 1.97077 2.39940 2.73732 3.29930 3.37488 3.42783 3.60417 4.05952 4.34420 4.38806 4.41636 4.46175 4.53098 4.67529 4.70400 4.76928 4.93278 4.97757 5.07561 5.09215 5.14506 5.24699 5.28313 5.31956 5.32314 5.37271 5.39437 5.43345 5.63050 5.65069 5.75691 5.78054 5.86552 5.96893 6.09194 6.15971 6.24228 6.46939 6.56594 6.81955 7.03979 7.15609 7.20927 7.49068 7.71409 7.75938 7.92394 8.10055 8.44320 9.00800 9.57578 11.05231 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.002822 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.421970 B = 9919.614540 C =11128.196284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.170 4.170 4 O -0.355 6.355 5 C 0.444 3.556 6 O -0.493 6.493 7 C 0.118 3.882 8 N -0.588 5.588 9 C 0.096 3.904 10 C 0.102 3.898 11 C -0.155 4.155 12 C 0.050 3.950 13 N -0.501 5.501 14 C 0.182 3.818 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.049 3.951 24 O -0.345 6.345 25 C 0.049 3.951 26 C 0.500 3.500 27 O -0.545 6.545 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.033 0.967 44 H -0.005 1.005 45 H 0.261 0.739 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.131 0.869 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 16.850 12.234 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 C -0.227 4.227 4 O -0.272 6.272 5 C 0.284 3.716 6 O -0.379 6.379 7 C -0.007 4.007 8 N -0.321 5.321 9 C -0.027 4.027 10 C 0.061 3.939 11 C -0.193 4.193 12 C -0.078 4.078 13 N -0.225 5.225 14 C 0.057 3.943 15 C -0.544 4.544 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.080 4.080 24 O -0.263 6.263 25 C -0.030 4.030 26 C 0.289 3.711 27 O -0.422 6.422 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.012 0.988 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.149 0.851 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.237 17.162 12.196 23.865 hybrid contribution -0.669 -0.069 -1.354 1.512 sum -11.906 17.093 10.842 23.483 Atomic orbital electron populations 1.21890 0.92266 1.03254 1.03192 1.22752 0.94953 0.92754 0.86981 1.22204 1.02311 0.95150 1.03038 1.86541 1.36467 1.62686 1.41461 1.24327 0.79472 0.76993 0.90759 1.90678 1.58873 1.57897 1.30439 1.20927 0.86126 0.99556 0.94121 1.47235 1.05040 1.15995 1.63860 1.22285 0.99703 0.81635 0.99056 1.22226 0.84415 0.97498 0.89724 1.23084 1.02929 0.98932 0.94322 1.22889 0.98294 0.90686 0.95935 1.65674 1.50370 1.05693 1.00804 1.19912 0.95287 0.85324 0.93812 1.21143 1.25944 1.02839 1.04486 0.91827 1.24982 0.95713 0.95511 0.98410 1.69958 1.39181 1.06745 1.37991 0.86437 0.79943 0.78113 0.82919 1.19626 1.20963 1.21138 1.22979 0.98647 0.90619 0.95764 1.88195 1.49469 1.19693 1.68985 1.22772 0.92966 0.83565 1.03693 1.21207 0.87366 0.85135 0.77357 1.90715 1.87165 1.20442 1.43912 0.91367 0.90307 0.91603 0.89636 0.90662 0.91524 0.91907 0.85891 0.85236 0.89428 0.89847 0.90542 0.90155 0.94250 0.90086 0.94870 0.98766 0.92956 0.89126 0.92831 0.85118 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.57 37.16 0.36 -0.59 16 2 C 0.08 0.73 3.18 -26.73 -0.09 0.64 16 3 C -0.17 -1.41 9.55 37.16 0.35 -1.05 16 4 O -0.35 -3.67 9.88 -39.26 -0.39 -4.06 16 5 C 0.44 5.19 7.99 36.01 0.29 5.48 16 6 O -0.49 -7.25 14.97 -18.75 -0.28 -7.53 16 7 C 0.12 1.12 5.92 -5.19 -0.03 1.09 16 8 N -0.59 -6.90 2.29 -176.09 -0.40 -7.31 16 9 C 0.10 1.10 5.00 -4.50 -0.02 1.08 16 10 C 0.10 1.46 1.03 -90.06 -0.09 1.37 16 11 C -0.15 -2.41 5.66 -25.54 -0.14 -2.55 16 12 C 0.05 0.96 5.97 -2.09 -0.01 0.94 16 13 N -0.50 -10.59 5.37 -231.25 -1.24 -11.83 16 14 C 0.18 4.62 4.58 -4.98 -0.02 4.60 16 15 C -0.51 -14.08 8.82 -34.44 -0.30 -14.38 16 16 H 0.06 1.77 7.61 -52.48 -0.40 1.37 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.05 0.82 5.77 -2.22 -0.01 0.81 16 24 O -0.35 -5.02 10.35 -35.23 -0.36 -5.38 16 25 C 0.05 0.62 6.42 35.81 0.23 0.85 16 26 C 0.50 6.76 7.42 -11.59 -0.09 6.67 16 27 O -0.54 -8.57 16.34 5.56 0.09 -8.48 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.88 7.16 -51.93 -0.37 0.51 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.12 0.74 8.04 -51.93 -0.42 0.32 16 36 H 0.13 1.20 7.22 -51.93 -0.38 0.83 16 37 H 0.09 0.97 7.97 -51.93 -0.41 0.56 16 38 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.08 1.18 6.17 -51.93 -0.32 0.85 16 40 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 41 H 0.04 0.77 7.82 -51.93 -0.41 0.36 16 42 H 0.08 1.62 7.95 -51.93 -0.41 1.20 16 43 H 0.03 0.90 8.13 -51.93 -0.42 0.48 16 44 H -0.01 -0.14 7.88 -51.93 -0.41 -0.55 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 47 H 0.05 0.85 7.71 -51.93 -0.40 0.45 16 48 H 0.13 1.36 8.14 -51.92 -0.42 0.93 16 49 H 0.10 1.16 6.51 -51.93 -0.34 0.82 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -33.82 394.29 -8.60 -42.42 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.98 Total: -1.08 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 0.32 Total: 6.41 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.91 Total: -44.76 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.94 Total: -25.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.82 -8.60 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.004 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds