Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46934 * 2 1 4 4 O 1.45197 * 109.47344 * 120.00225 * 2 1 3 5 5 C 1.34232 * 116.99692 * 150.00162 * 4 2 1 6 6 O 1.20820 * 120.00422 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99917 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.47279 * 179.97438 * 7 5 4 9 9 C 1.46204 * 118.77692 * 269.98208 * 8 7 5 10 10 C 1.52412 * 109.94929 * 162.50104 * 9 8 7 11 11 C 1.53779 * 110.32798 * 285.73608 * 10 9 8 12 12 C 1.54496 * 104.88598 * 240.98733 * 11 10 9 13 13 N 1.48611 * 104.71649 * 336.18009 * 12 11 10 14 14 C 1.46900 * 110.99708 * 158.83314 * 13 12 11 15 15 C 1.50695 * 109.47433 * 69.87540 * 14 13 12 16 16 H 1.08007 * 119.99642 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00158 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00070 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47266 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47424 * 119.99997 * 19 17 15 22 22 H 1.48508 * 109.47185 * 239.99804 * 19 17 15 23 23 C 1.48967 * 104.14573 * 39.16084 * 13 12 11 24 24 O 1.42573 * 110.12821 * 47.67922 * 10 9 8 25 25 C 1.43030 * 113.17233 * 293.27194 * 24 10 9 26 26 C 1.33843 * 118.77282 * 89.99786 * 8 7 5 27 27 O 1.21278 * 118.69525 * 2.40449 * 26 8 7 28 28 H 1.08999 * 109.46639 * 299.99379 * 1 2 3 29 29 H 1.08992 * 109.47624 * 59.99730 * 1 2 3 30 30 H 1.09002 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47160 * 240.00650 * 2 1 3 32 32 H 1.08996 * 109.47533 * 300.00867 * 3 2 1 33 33 H 1.09006 * 109.47266 * 60.00544 * 3 2 1 34 34 H 1.09006 * 109.47267 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46849 * 59.99801 * 7 5 4 36 36 H 1.08991 * 109.46984 * 300.00070 * 7 5 4 37 37 H 1.09004 * 109.39118 * 42.35297 * 9 8 7 38 38 H 1.08999 * 109.38774 * 282.65127 * 9 8 7 39 39 H 1.09004 * 110.35308 * 122.13055 * 11 10 9 40 40 H 1.08994 * 110.35581 * 359.84182 * 11 10 9 41 41 H 1.09002 * 110.40824 * 95.02356 * 12 11 10 42 42 H 1.09002 * 110.40727 * 217.33888 * 12 11 10 43 43 H 1.08998 * 109.46661 * 189.87436 * 14 13 12 44 44 H 1.09004 * 109.47100 * 309.87130 * 14 13 12 45 45 H 0.96998 * 120.00395 * 180.02562 * 18 17 15 46 46 H 1.09000 * 110.41002 * 202.22406 * 23 13 12 47 47 H 1.09000 * 110.41229 * 79.75947 * 23 13 12 48 48 H 1.09008 * 109.39806 * 168.79504 * 25 24 10 49 49 H 1.08997 * 109.40651 * 288.52929 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 3.1938 -1.3170 1.0849 6 8 3.8015 -1.2996 0.0409 7 6 3.7602 -2.0488 2.2744 8 7 5.0454 -2.6507 1.9108 9 6 5.0583 -4.0079 1.3674 10 6 6.3857 -4.2753 0.6677 11 6 6.4379 -3.5357 -0.6795 12 6 6.5934 -4.6501 -1.7383 13 7 7.1979 -5.7898 -1.0007 14 6 6.9560 -7.0580 -1.7016 15 6 7.7645 -7.0915 -2.9729 16 1 8.3947 -6.2542 -3.2343 17 6 7.6998 -8.1910 -3.8023 18 7 6.9328 -9.2107 -3.4838 19 14 8.7026 -8.2327 -5.3778 20 1 9.4777 -6.9724 -5.5048 21 1 9.6362 -9.3869 -5.3399 22 1 7.7905 -8.3718 -6.5415 23 6 6.5158 -5.7694 0.3235 24 8 7.4695 -3.8652 1.4984 25 6 7.5218 -2.4498 1.6974 26 6 6.1641 -1.9376 2.0888 27 8 6.0787 -0.8348 2.5861 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6766 1.9564 -0.8898 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4426 0.0005 35 1 3.0672 -2.8314 2.5832 36 1 3.9063 -1.3479 3.0962 37 1 4.2433 -4.1191 0.6522 38 1 4.9262 -4.7237 2.1787 39 1 7.2944 -2.8621 -0.7093 40 1 5.5134 -2.9824 -0.8443 41 1 5.6199 -4.9309 -2.1403 42 1 7.2549 -4.3227 -2.5403 43 1 7.2514 -7.8891 -1.0612 44 1 5.8964 -7.1437 -1.9425 45 1 6.8875 -9.9843 -4.0671 46 1 7.1219 -6.2808 1.0712 47 1 5.5307 -6.2304 0.2508 48 1 8.2367 -2.2215 2.4880 49 1 7.8389 -1.9657 0.7737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = -166.751523 kcal Electronic energy + Delta-G solvation = -31267.841971 eV Core-core repulsion = 27001.815729 eV Total energy + Delta-G solvation = -4266.026242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48876 -41.44275 -40.05763 -38.07017 -37.89168 -36.50491 -34.99814 -34.21888 -32.66181 -30.85011 -30.56030 -28.81871 -28.25456 -27.64928 -26.39204 -24.48801 -23.83141 -22.27643 -22.01037 -21.53639 -19.61644 -19.14393 -18.94454 -18.44706 -18.10058 -17.58519 -17.34289 -17.00804 -16.74652 -16.44924 -15.99520 -15.66726 -15.39147 -15.28144 -15.11219 -15.03014 -14.56581 -14.39387 -14.24917 -14.23183 -13.94292 -13.46653 -13.31263 -13.23071 -13.13628 -13.03092 -13.01136 -12.76515 -12.74484 -12.60335 -12.32038 -12.15730 -12.07003 -11.96990 -11.85727 -11.80745 -11.55119 -11.43417 -11.24638 -10.62085 -10.56388 -10.08780 -9.20333 -8.21936 -6.30917 1.00966 1.09504 1.39973 1.41190 1.45874 1.54351 1.88968 2.39240 2.49964 3.01016 3.11407 3.30036 3.49893 3.56575 3.62564 3.67462 3.76195 3.88689 3.99737 4.09250 4.09857 4.19969 4.25256 4.31184 4.35482 4.47418 4.55554 4.58377 4.60895 4.69569 4.71950 4.76585 4.80339 4.82235 4.95641 4.98107 5.01342 5.07681 5.13790 5.17981 5.23764 5.44996 5.62039 5.78334 5.97835 6.07803 6.18630 6.48160 6.61034 6.76965 6.84062 7.38684 8.89525 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.002822 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.421970 B = 9919.614540 C =11128.196284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 C -0.166 4.166 4 O -0.352 6.352 5 C 0.443 3.557 6 O -0.530 6.530 7 C 0.116 3.884 8 N -0.586 5.586 9 C 0.101 3.899 10 C 0.108 3.892 11 C -0.140 4.140 12 C 0.052 3.948 13 N -0.518 5.518 14 C 0.199 3.801 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.048 3.952 24 O -0.356 6.356 25 C 0.048 3.952 26 C 0.497 3.503 27 O -0.571 6.571 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.165 0.835 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.010 0.990 44 H -0.027 1.027 45 H 0.265 0.735 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.153 0.847 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 17.669 12.997 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 C -0.223 4.223 4 O -0.269 6.269 5 C 0.285 3.715 6 O -0.419 6.419 7 C -0.008 4.008 8 N -0.318 5.318 9 C -0.022 4.022 10 C 0.068 3.932 11 C -0.178 4.178 12 C -0.077 4.077 13 N -0.242 5.242 14 C 0.072 3.928 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.080 4.080 24 O -0.274 6.274 25 C -0.031 4.031 26 C 0.287 3.713 27 O -0.452 6.452 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.183 0.817 36 H 0.153 0.847 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.083 0.917 43 H 0.028 0.972 44 H -0.009 1.009 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.170 0.830 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.197 17.988 12.979 25.314 hybrid contribution -0.406 -0.283 -1.573 1.649 sum -12.602 17.705 11.405 24.543 Atomic orbital electron populations 1.21892 0.89900 1.03705 1.04458 1.22979 0.96741 0.92668 0.85904 1.22194 1.00562 0.95119 1.04469 1.86544 1.35882 1.62444 1.42017 1.24780 0.79372 0.76512 0.90802 1.90666 1.59858 1.59372 1.32005 1.21242 0.85713 1.00753 0.93053 1.47242 1.05552 1.15913 1.63064 1.22261 0.97730 0.82137 1.00033 1.22038 0.86280 0.95394 0.89511 1.22946 1.03171 0.97677 0.94043 1.22829 0.97155 0.91120 0.96560 1.65520 1.51899 1.04262 1.02502 1.19535 0.93416 0.86765 0.93034 1.21439 1.26236 1.02820 1.05744 0.92467 1.25842 0.96722 0.95060 1.01758 1.70061 1.40402 1.07348 1.39367 0.85386 0.78477 0.78294 0.78779 1.19106 1.20271 1.20327 1.23012 0.98886 0.92794 0.93349 1.88177 1.49621 1.20941 1.68690 1.22924 0.93303 0.82327 1.04541 1.21316 0.88062 0.84852 0.77093 1.90705 1.87584 1.21503 1.45363 0.90488 0.88632 0.91567 0.91411 0.88834 0.90528 0.94515 0.81741 0.84681 0.88693 0.86933 0.90338 0.89805 0.95142 0.91673 0.97231 1.00895 0.92612 0.88956 0.91617 0.82976 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 71.98 0.69 -0.84 16 2 C 0.07 1.23 3.18 30.60 0.10 1.32 16 3 C -0.17 -2.62 9.55 71.98 0.69 -1.93 16 4 O -0.35 -6.84 9.88 -51.43 -0.51 -7.35 16 5 C 0.44 9.82 7.99 71.24 0.57 10.39 16 6 O -0.53 -15.44 14.97 21.98 0.33 -15.11 16 7 C 0.12 1.93 5.92 85.64 0.51 2.44 16 8 N -0.59 -12.46 2.29 -829.95 -1.90 -14.36 16 9 C 0.10 2.06 5.00 86.24 0.43 2.49 16 10 C 0.11 2.96 1.03 -10.43 -0.01 2.95 16 11 C -0.14 -4.31 5.66 31.37 0.18 -4.13 16 12 C 0.05 2.00 5.97 86.48 0.52 2.52 16 13 N -0.52 -22.22 5.37 -885.55 -4.76 -26.98 16 14 C 0.20 10.42 4.58 85.56 0.39 10.82 16 15 C -0.52 -29.81 8.82 25.60 0.23 -29.59 16 16 H 0.06 3.25 7.61 -2.91 -0.02 3.23 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 19 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 C 0.05 1.58 5.77 86.20 0.50 2.08 16 24 O -0.36 -9.78 10.35 -148.98 -1.54 -11.32 16 25 C 0.05 1.12 6.42 71.11 0.46 1.58 16 26 C 0.50 12.66 7.42 87.68 0.65 13.31 16 27 O -0.57 -17.35 16.34 -3.02 -0.05 -17.40 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.41 7.16 -2.39 -0.02 1.39 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.17 1.33 8.04 -2.39 -0.02 1.31 16 36 H 0.14 2.19 7.22 -2.39 -0.02 2.18 16 37 H 0.09 1.86 7.97 -2.39 -0.02 1.84 16 38 H 0.11 1.72 8.12 -2.39 -0.02 1.70 16 39 H 0.08 2.38 6.17 -2.39 -0.01 2.36 16 40 H 0.08 2.56 6.94 -2.39 -0.02 2.54 16 41 H 0.03 1.22 7.82 -2.39 -0.02 1.20 16 42 H 0.06 2.68 7.95 -2.39 -0.02 2.66 16 43 H 0.01 0.54 8.13 -2.39 -0.02 0.52 16 44 H -0.03 -1.48 7.88 -2.38 -0.02 -1.49 16 45 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.09 3.01 8.07 -2.39 -0.02 2.99 16 47 H 0.07 2.02 7.71 -2.39 -0.02 2.00 16 48 H 0.15 2.88 8.14 -2.38 -0.02 2.86 16 49 H 0.10 2.25 6.51 -2.39 -0.02 2.23 16 Total: -1.00 -74.36 394.29 1.17 -73.19 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.94 Total: 13.81 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.35 Total: 14.12 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -6.37 Total: -96.40 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.77 Total: -51.18 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -74.36 1.17 -73.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.564 kcal (2) G-P(sol) polarization free energy of solvation -74.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds