Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99712 * 2 1 4 4 O 1.20822 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47152 * 299.99592 * 5 3 2 7 7 C 1.52993 * 109.47511 * 59.99942 * 5 3 2 8 8 C 1.53001 * 109.46879 * 180.02562 * 5 3 2 9 9 N 1.46505 * 109.46967 * 174.99628 * 8 5 3 10 10 C 1.46243 * 118.80036 * 270.00016 * 9 8 5 11 11 C 1.52180 * 109.96081 * 162.74813 * 10 9 8 12 12 C 1.54466 * 110.32046 * 284.86693 * 11 10 9 13 13 C 1.55029 * 101.59189 * 206.30452 * 12 11 10 14 14 N 1.47904 * 104.86668 * 36.39994 * 13 12 11 15 15 C 1.46906 * 110.99667 * 213.78260 * 14 13 12 16 16 C 1.50703 * 109.47109 * 290.80461 * 15 14 13 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16 23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16 24 24 C 1.47613 * 108.53999 * 336.02728 * 14 13 12 25 25 O 1.42291 * 110.62786 * 47.18488 * 11 10 9 26 26 C 1.43067 * 113.24684 * 293.83727 * 25 11 10 27 27 C 1.33847 * 118.79535 * 89.99956 * 9 8 5 28 28 O 1.21278 * 118.65025 * 2.55784 * 27 9 8 29 29 H 1.09004 * 109.47074 * 60.00314 * 1 2 3 30 30 H 1.08999 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47000 * 299.99924 * 1 2 3 32 32 H 1.09000 * 109.47320 * 180.02562 * 7 5 3 33 33 H 1.09005 * 109.47255 * 300.00422 * 7 5 3 34 34 H 1.08999 * 109.47198 * 59.99679 * 7 5 3 35 35 H 1.08996 * 109.47620 * 54.99808 * 8 5 3 36 36 H 1.08993 * 109.47070 * 294.99152 * 8 5 3 37 37 H 1.09002 * 109.38756 * 42.59552 * 10 9 8 38 38 H 1.09003 * 109.38527 * 282.89796 * 10 9 8 39 39 H 1.08997 * 111.00245 * 324.38564 * 12 11 10 40 40 H 1.08998 * 110.99724 * 88.19189 * 12 11 10 41 41 H 1.08993 * 110.36407 * 277.54727 * 13 12 11 42 42 H 1.09008 * 110.35661 * 155.24468 * 13 12 11 43 43 H 1.08992 * 109.47459 * 50.80379 * 15 14 13 44 44 H 1.09004 * 109.47040 * 170.80530 * 15 14 13 45 45 H 0.97007 * 120.00076 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.91532 * 120.79732 * 24 14 13 47 47 H 1.08998 * 109.91962 * 242.09064 * 24 14 13 48 48 H 1.09007 * 109.39286 * 168.46232 * 26 25 11 49 49 H 1.08995 * 109.39900 * 288.27793 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1130 0.5816 -1.2501 8 6 4.0001 2.7421 0.0002 9 7 5.4581 2.8202 0.1201 10 6 6.0527 2.8886 1.4545 11 6 7.5316 2.5374 1.3829 12 6 7.7130 1.0147 1.1980 13 6 9.1148 0.7900 1.8209 14 7 9.1753 1.7242 2.9660 15 6 10.5397 2.2340 3.1578 16 6 11.4288 1.1188 3.6445 17 1 11.0213 0.1301 3.7958 18 6 12.7626 1.3607 3.8967 19 7 13.5386 0.3874 4.3210 20 14 13.4676 3.0705 3.6345 21 1 13.3440 3.8548 4.8893 22 1 14.8998 2.9628 3.2570 23 1 12.7195 3.7532 2.5483 24 6 8.2274 2.8289 2.7211 25 8 8.1634 3.2423 0.3205 26 6 7.6999 2.8467 -0.9739 27 6 6.1974 2.8263 -0.9957 28 8 5.6314 2.8144 -2.0682 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 5.2015 0.6383 -1.2502 33 1 3.8039 -0.4637 -1.2502 34 1 3.7229 1.0758 -2.1398 35 1 3.5382 3.2572 0.8425 36 1 3.6864 3.2142 -0.9308 37 1 5.5449 2.1843 2.1134 38 1 5.9391 3.8981 1.8498 39 1 6.9494 0.4611 1.7443 40 1 7.7067 0.7460 0.1417 41 1 9.8941 1.0268 1.0966 42 1 9.2162 -0.2392 2.1654 43 1 10.9213 2.6160 2.2111 44 1 10.5272 3.0368 3.8951 45 1 14.4771 0.5575 4.4981 46 1 7.4893 2.8694 3.5222 47 1 8.7665 3.7744 2.6612 48 1 8.0632 3.5535 -1.7200 49 1 8.0775 1.8507 -1.2048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = -138.557264 kcal Electronic energy + Delta-G solvation = -31373.416386 eV Core-core repulsion = 27108.612739 eV Total energy + Delta-G solvation = -4264.803647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55130 -40.80488 -39.09139 -37.12274 -36.54688 -36.17058 -33.75402 -32.87108 -31.20894 -29.79079 -28.62822 -27.97773 -27.51161 -26.38671 -25.18393 -23.93976 -22.33226 -21.49214 -20.52945 -20.10571 -18.83610 -18.09042 -17.83545 -17.32585 -16.78890 -16.76514 -16.65594 -16.25624 -15.62949 -15.16651 -14.95586 -14.60518 -14.49190 -14.16244 -13.83261 -13.69637 -13.49245 -13.39686 -13.21603 -12.95589 -12.82699 -12.70326 -12.65393 -12.33448 -12.27798 -11.89785 -11.81456 -11.56536 -11.50373 -11.26045 -11.19463 -11.09247 -10.89962 -10.73457 -10.48555 -10.40756 -10.27733 -9.86284 -9.54180 -9.31254 -9.06067 -8.59266 -7.53117 -6.07364 -4.05127 1.80343 2.06461 2.30529 2.68986 3.27519 3.35352 3.37884 3.45303 4.01834 4.18804 4.34564 4.40514 4.45056 4.46324 4.51820 4.63161 4.70807 4.78677 4.81939 4.91903 4.99389 5.10968 5.12211 5.15270 5.23892 5.26777 5.32967 5.40014 5.46151 5.48720 5.61611 5.65538 5.73942 5.79476 5.88013 5.99250 6.02322 6.07007 6.37330 6.44480 6.71249 6.79208 6.92361 7.08121 7.32643 7.50405 7.76613 7.78499 7.86864 8.60463 9.01033 9.54281 11.05711 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002572 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.615852 B =10883.385829 C =11419.689477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.507 6.507 5 C -0.100 4.100 6 H 0.112 0.888 7 C -0.135 4.135 8 C 0.125 3.875 9 N -0.600 5.600 10 C 0.098 3.902 11 C 0.079 3.921 12 C -0.158 4.158 13 C 0.064 3.936 14 N -0.513 5.513 15 C 0.157 3.843 16 C -0.509 4.509 17 H 0.080 0.920 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.058 3.942 25 O -0.350 6.350 26 C 0.046 3.954 27 C 0.492 3.508 28 O -0.539 6.539 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.081 0.919 43 H -0.005 1.005 44 H 0.024 0.976 45 H 0.264 0.736 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.130 0.870 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.019 1.655 -9.503 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.394 6.394 5 C -0.120 4.120 6 H 0.130 0.870 7 C -0.193 4.193 8 C 0.002 3.998 9 N -0.333 5.333 10 C -0.026 4.026 11 C 0.038 3.962 12 C -0.197 4.197 13 C -0.064 4.064 14 N -0.237 5.237 15 C 0.030 3.970 16 C -0.548 4.548 17 H 0.098 0.902 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.071 4.071 25 O -0.269 6.269 26 C -0.034 4.034 27 C 0.280 3.720 28 O -0.417 6.417 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.013 0.987 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.148 0.852 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.303 1.796 -9.509 25.232 hybrid contribution 0.365 1.139 -0.717 1.394 sum -22.938 2.935 -10.226 25.285 Atomic orbital electron populations 1.23297 0.76138 1.03848 1.02624 1.86516 1.23543 1.33268 1.83890 1.23587 0.91635 0.81407 0.71906 1.90679 1.67211 1.36298 1.45246 1.21453 0.87411 0.99895 1.03241 0.87009 1.21749 1.01997 1.00222 0.95307 1.21322 0.79673 0.93464 1.05311 1.47504 1.06470 1.72752 1.06550 1.22092 0.93600 1.03300 0.83567 1.22665 0.90572 0.92725 0.90259 1.23390 1.00392 0.94395 1.01483 1.22839 0.93400 0.98630 0.91499 1.63752 1.08724 1.12789 1.38399 1.20417 0.84796 0.96453 0.95303 1.20991 0.92698 0.97076 1.44003 0.90226 1.24895 0.96943 0.96679 0.94798 1.69890 1.06090 1.31877 1.46033 0.86889 0.78552 0.85409 0.79113 1.20141 1.21212 1.19113 1.22787 0.96619 0.96537 0.91178 1.88144 1.63656 1.62214 1.12840 1.22847 0.88723 1.04128 0.87654 1.21048 0.91293 0.75802 0.83817 1.90736 1.72512 1.49682 1.28728 0.91834 0.87953 0.91785 0.91274 0.91498 0.91391 0.89194 0.88364 0.89072 0.90226 0.89692 0.90967 0.93192 0.90074 0.98722 0.95781 0.92653 0.89366 0.91476 0.85233 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.18 10.47 -39.25 -0.41 -3.59 16 3 C 0.47 4.69 7.26 36.01 0.26 4.95 16 4 O -0.51 -6.18 15.67 -18.75 -0.29 -6.47 16 5 C -0.10 -0.87 3.03 -91.77 -0.28 -1.15 16 6 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.14 -1.25 7.85 37.15 0.29 -0.96 16 8 C 0.13 1.21 4.31 -4.04 -0.02 1.19 16 9 N -0.60 -6.13 2.71 -174.84 -0.47 -6.60 16 10 C 0.10 0.93 5.21 -4.60 -0.02 0.90 16 11 C 0.08 0.97 0.83 -89.95 -0.07 0.90 16 12 C -0.16 -1.97 5.79 -24.89 -0.14 -2.11 16 13 C 0.06 1.10 6.15 -2.20 -0.01 1.09 16 14 N -0.51 -9.83 5.16 -232.86 -1.20 -11.03 16 15 C 0.16 3.65 3.40 -4.97 -0.02 3.63 16 16 C -0.51 -14.06 9.36 -34.44 -0.32 -14.38 16 17 H 0.08 2.39 8.01 -52.48 -0.42 1.97 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 20 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 24 C 0.06 0.86 6.23 -3.11 -0.02 0.84 16 25 O -0.35 -4.79 10.37 -35.23 -0.37 -5.16 16 26 C 0.05 0.52 6.36 35.80 0.23 0.75 16 27 C 0.49 5.85 5.88 -11.60 -0.07 5.78 16 28 O -0.54 -7.60 14.57 5.56 0.08 -7.52 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.07 0.70 6.11 -51.93 -0.32 0.38 16 33 H 0.07 0.55 8.11 -51.93 -0.42 0.12 16 34 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 35 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 36 H 0.10 1.13 7.22 -51.93 -0.37 0.76 16 37 H 0.09 0.70 7.85 -51.93 -0.41 0.29 16 38 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 39 H 0.08 0.93 7.83 -51.93 -0.41 0.53 16 40 H 0.07 0.82 5.83 -51.93 -0.30 0.51 16 41 H 0.05 0.94 7.62 -51.93 -0.40 0.54 16 42 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 43 H 0.00 -0.12 6.91 -51.93 -0.36 -0.48 16 44 H 0.02 0.56 7.47 -51.93 -0.39 0.17 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.09 1.11 7.81 -51.93 -0.41 0.70 16 47 H 0.07 1.06 7.48 -51.93 -0.39 0.67 16 48 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 49 H 0.09 0.98 6.52 -51.93 -0.34 0.64 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -33.49 384.63 -7.86 -41.35 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.87 Total: -1.43 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 0.77 Total: 4.55 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.90 Total: -43.99 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.99 Total: -22.74 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.49 -7.86 -41.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.205 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds