Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99712 * 2 1 4 4 O 1.20822 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47152 * 299.99592 * 5 3 2 7 7 C 1.52993 * 109.47511 * 59.99942 * 5 3 2 8 8 C 1.53001 * 109.46879 * 180.02562 * 5 3 2 9 9 N 1.46505 * 109.46967 * 174.99628 * 8 5 3 10 10 C 1.46243 * 118.80036 * 270.00016 * 9 8 5 11 11 C 1.52180 * 109.96081 * 162.74813 * 10 9 8 12 12 C 1.54466 * 110.32046 * 284.86693 * 11 10 9 13 13 C 1.55029 * 101.59189 * 206.30452 * 12 11 10 14 14 N 1.47904 * 104.86668 * 36.39994 * 13 12 11 15 15 C 1.46906 * 110.99667 * 213.78260 * 14 13 12 16 16 C 1.50703 * 109.47109 * 290.80461 * 15 14 13 17 17 H 1.08005 * 119.99876 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47368 * 90.00198 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00455 * 20 18 16 23 23 H 1.48505 * 109.47369 * 329.99926 * 20 18 16 24 24 C 1.47613 * 108.53999 * 336.02728 * 14 13 12 25 25 O 1.42291 * 110.62786 * 47.18488 * 11 10 9 26 26 C 1.43067 * 113.24684 * 293.83727 * 25 11 10 27 27 C 1.33847 * 118.79535 * 89.99956 * 9 8 5 28 28 O 1.21278 * 118.65025 * 2.55784 * 27 9 8 29 29 H 1.09004 * 109.47074 * 60.00314 * 1 2 3 30 30 H 1.08999 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47000 * 299.99924 * 1 2 3 32 32 H 1.09000 * 109.47320 * 180.02562 * 7 5 3 33 33 H 1.09005 * 109.47255 * 300.00422 * 7 5 3 34 34 H 1.08999 * 109.47198 * 59.99679 * 7 5 3 35 35 H 1.08996 * 109.47620 * 54.99808 * 8 5 3 36 36 H 1.08993 * 109.47070 * 294.99152 * 8 5 3 37 37 H 1.09002 * 109.38756 * 42.59552 * 10 9 8 38 38 H 1.09003 * 109.38527 * 282.89796 * 10 9 8 39 39 H 1.08997 * 111.00245 * 324.38564 * 12 11 10 40 40 H 1.08998 * 110.99724 * 88.19189 * 12 11 10 41 41 H 1.08993 * 110.36407 * 277.54727 * 13 12 11 42 42 H 1.09008 * 110.35661 * 155.24468 * 13 12 11 43 43 H 1.08992 * 109.47459 * 50.80379 * 15 14 13 44 44 H 1.09004 * 109.47040 * 170.80530 * 15 14 13 45 45 H 0.97007 * 120.00076 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.91532 * 120.79732 * 24 14 13 47 47 H 1.08998 * 109.91962 * 242.09064 * 24 14 13 48 48 H 1.09007 * 109.39286 * 168.46232 * 26 25 11 49 49 H 1.08995 * 109.39900 * 288.27793 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1130 0.5816 -1.2501 8 6 4.0001 2.7421 0.0002 9 7 5.4581 2.8202 0.1201 10 6 6.0527 2.8886 1.4545 11 6 7.5316 2.5374 1.3829 12 6 7.7130 1.0147 1.1980 13 6 9.1148 0.7900 1.8209 14 7 9.1753 1.7242 2.9660 15 6 10.5397 2.2340 3.1578 16 6 11.4288 1.1188 3.6445 17 1 11.0213 0.1301 3.7958 18 6 12.7626 1.3607 3.8967 19 7 13.5386 0.3874 4.3210 20 14 13.4676 3.0705 3.6345 21 1 13.3440 3.8548 4.8893 22 1 14.8998 2.9628 3.2570 23 1 12.7195 3.7532 2.5483 24 6 8.2274 2.8289 2.7211 25 8 8.1634 3.2423 0.3205 26 6 7.6999 2.8467 -0.9739 27 6 6.1974 2.8263 -0.9957 28 8 5.6314 2.8144 -2.0682 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 5.2015 0.6383 -1.2502 33 1 3.8039 -0.4637 -1.2502 34 1 3.7229 1.0758 -2.1398 35 1 3.5382 3.2572 0.8425 36 1 3.6864 3.2142 -0.9308 37 1 5.5449 2.1843 2.1134 38 1 5.9391 3.8981 1.8498 39 1 6.9494 0.4611 1.7443 40 1 7.7067 0.7460 0.1417 41 1 9.8941 1.0268 1.0966 42 1 9.2162 -0.2392 2.1654 43 1 10.9213 2.6160 2.2111 44 1 10.5272 3.0368 3.8951 45 1 14.4771 0.5575 4.4981 46 1 7.4893 2.8694 3.5222 47 1 8.7665 3.7744 2.6612 48 1 8.0632 3.5535 -1.7200 49 1 8.0775 1.8507 -1.2048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = -163.040474 kcal Electronic energy + Delta-G solvation = -31374.478058 eV Core-core repulsion = 27108.612739 eV Total energy + Delta-G solvation = -4265.865319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44715 -41.58230 -40.15492 -37.88499 -37.77453 -37.00524 -34.93481 -34.45882 -32.67025 -30.91617 -29.49608 -29.10033 -28.59677 -27.22152 -26.32303 -24.67384 -24.02996 -22.45697 -21.71264 -21.18939 -19.72704 -19.07008 -18.86333 -18.57225 -18.04702 -17.63587 -17.46871 -17.18010 -16.64760 -16.26572 -16.20279 -15.86277 -15.40666 -15.30583 -15.00204 -14.76833 -14.56255 -14.35922 -14.31406 -14.11363 -14.04759 -13.82194 -13.65561 -13.34691 -13.10544 -13.06975 -12.91990 -12.61902 -12.57045 -12.42537 -12.25824 -12.17927 -12.02359 -11.88169 -11.82305 -11.75948 -11.50064 -11.43231 -11.25242 -10.76133 -10.47308 -9.88716 -9.05911 -8.26594 -6.29451 1.06628 1.27863 1.36180 1.37857 1.48182 1.48280 1.95229 2.35796 2.50548 3.06973 3.12160 3.26198 3.47166 3.50297 3.56826 3.73077 3.78267 3.82293 4.10796 4.15849 4.25533 4.29058 4.32255 4.38321 4.40101 4.47070 4.50664 4.55323 4.62481 4.67686 4.71826 4.76155 4.80769 4.83629 4.89590 4.96964 4.99339 5.07104 5.14252 5.19994 5.24254 5.32582 5.55623 5.86161 5.98285 6.20693 6.27380 6.61585 6.61697 6.77250 6.89412 7.34439 8.89913 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002572 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.615852 B =10883.385829 C =11419.689477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.475 3.525 4 O -0.534 6.534 5 C -0.094 4.094 6 H 0.136 0.864 7 C -0.130 4.130 8 C 0.129 3.871 9 N -0.593 5.593 10 C 0.102 3.898 11 C 0.083 3.917 12 C -0.143 4.143 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.169 3.831 16 C -0.513 4.513 17 H 0.039 0.961 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.943 3.057 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.253 1.253 24 C 0.055 3.945 25 O -0.372 6.372 26 C 0.046 3.954 27 C 0.492 3.508 28 O -0.566 6.566 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.062 0.938 43 H -0.014 1.014 44 H 0.029 0.971 45 H 0.266 0.734 46 H 0.119 0.881 47 H 0.058 0.942 48 H 0.139 0.861 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.908 2.724 -9.403 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.424 6.424 5 C -0.114 4.114 6 H 0.154 0.846 7 C -0.187 4.187 8 C 0.006 3.994 9 N -0.325 5.325 10 C -0.021 4.021 11 C 0.042 3.958 12 C -0.181 4.181 13 C -0.067 4.067 14 N -0.252 5.252 15 C 0.041 3.959 16 C -0.551 4.551 17 H 0.057 0.943 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.767 3.233 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.177 1.177 24 C -0.073 4.073 25 O -0.290 6.290 26 C -0.033 4.033 27 C 0.281 3.719 28 O -0.446 6.446 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.004 0.996 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.136 0.864 47 H 0.076 0.924 48 H 0.156 0.844 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.227 2.857 -9.396 27.071 hybrid contribution 0.888 0.695 -0.746 1.352 sum -24.339 3.552 -10.143 26.606 Atomic orbital electron populations 1.23563 0.74700 1.05731 1.02580 1.86506 1.25013 1.32652 1.83462 1.23758 0.92002 0.81286 0.71089 1.90671 1.67878 1.37185 1.46670 1.21432 0.86773 0.99351 1.03867 0.84648 1.21667 1.01373 1.00767 0.94875 1.21294 0.79129 0.94145 1.04833 1.47478 1.06645 1.71903 1.06463 1.22148 0.91405 1.05110 0.83429 1.22572 0.92117 0.92228 0.88863 1.23330 0.97564 0.95021 1.02160 1.22783 0.96023 0.97271 0.90667 1.63616 1.07089 1.14648 1.39879 1.20124 0.86537 0.94714 0.94488 1.21249 0.93626 0.96794 1.43467 0.94287 1.25816 0.97431 1.01101 0.94583 1.70044 1.06583 1.34452 1.47781 0.85769 0.77659 0.80086 0.79776 1.18826 1.20959 1.17735 1.22899 0.96286 0.94401 0.93743 1.88115 1.64466 1.62671 1.13793 1.22938 0.88568 1.04879 0.86933 1.21079 0.91399 0.75558 0.83865 1.90736 1.72904 1.51141 1.29782 0.92131 0.85172 0.91637 0.91943 0.90364 0.93204 0.87730 0.90570 0.86115 0.88748 0.87298 0.89663 0.95620 0.91908 0.99596 0.95343 0.92501 0.86357 0.92351 0.84355 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.67 10.47 -51.38 -0.54 -6.21 16 3 C 0.47 8.52 7.26 71.24 0.52 9.04 16 4 O -0.53 -12.32 15.67 21.98 0.34 -11.98 16 5 C -0.09 -1.40 3.03 -11.54 -0.03 -1.44 16 6 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.13 -2.17 7.85 71.98 0.57 -1.60 16 8 C 0.13 2.17 4.31 86.38 0.37 2.54 16 9 N -0.59 -10.38 2.71 -825.97 -2.24 -12.62 16 10 C 0.10 1.51 5.21 86.16 0.45 1.96 16 11 C 0.08 1.81 0.83 -10.36 -0.01 1.80 16 12 C -0.14 -3.19 5.79 31.79 0.18 -3.01 16 13 C 0.06 2.07 6.15 86.80 0.53 2.60 16 14 N -0.53 -19.86 5.16 -890.64 -4.60 -24.45 16 15 C 0.17 7.83 3.40 85.56 0.29 8.12 16 16 C -0.51 -29.09 9.36 25.60 0.24 -28.85 16 17 H 0.04 2.46 8.01 -2.91 -0.02 2.44 16 18 C 0.01 0.46 5.47 84.66 0.46 0.92 16 19 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 20 Si 0.94 43.72 27.47 68.60 1.88 45.60 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 24 C 0.05 1.49 6.23 86.37 0.54 2.02 16 25 O -0.37 -9.42 10.37 -148.98 -1.55 -10.97 16 26 C 0.05 0.96 6.36 71.11 0.45 1.41 16 27 C 0.49 10.77 5.88 87.67 0.52 11.29 16 28 O -0.57 -15.41 14.57 -3.02 -0.04 -15.45 16 29 H 0.06 0.67 8.13 -2.38 -0.02 0.66 16 30 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.06 1.14 6.11 -2.39 -0.01 1.12 16 33 H 0.08 1.11 8.11 -2.38 -0.02 1.09 16 34 H 0.05 1.01 7.94 -2.39 -0.02 0.99 16 35 H 0.10 1.48 7.85 -2.39 -0.02 1.46 16 36 H 0.08 1.67 7.22 -2.39 -0.02 1.66 16 37 H 0.12 1.17 7.85 -2.39 -0.02 1.15 16 38 H 0.09 1.23 8.13 -2.39 -0.02 1.21 16 39 H 0.11 1.96 7.83 -2.39 -0.02 1.94 16 40 H 0.08 1.72 5.83 -2.39 -0.01 1.71 16 41 H 0.03 0.98 7.62 -2.39 -0.02 0.97 16 42 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 43 H -0.01 -0.65 6.91 -2.39 -0.02 -0.67 16 44 H 0.03 1.29 7.47 -2.38 -0.02 1.28 16 45 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 46 H 0.12 2.49 7.81 -2.38 -0.02 2.48 16 47 H 0.06 1.71 7.48 -2.39 -0.02 1.69 16 48 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 49 H 0.10 1.96 6.52 -2.39 -0.02 1.95 16 Total: -1.00 -75.32 384.63 0.73 -74.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.89 Total: 11.63 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.27 Total: 8.29 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -6.54 Total: -95.52 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.78 Total: -44.61 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -75.32 0.73 -74.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.444 kcal (2) G-P(sol) polarization free energy of solvation -75.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds