Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.46968 * 2 1 4 4 O 1.45205 * 109.46964 * 119.99904 * 2 1 3 5 5 C 1.34232 * 116.99635 * 150.00389 * 4 2 1 6 6 O 1.20826 * 120.00040 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99690 * 179.97438 * 5 4 2 8 8 N 1.46904 * 109.46861 * 179.97438 * 7 5 4 9 9 C 1.48045 * 110.99594 * 170.00205 * 8 7 5 10 10 C 1.53482 * 86.05007 * 222.69823 * 9 8 7 11 11 C 1.48031 * 111.00344 * 70.55918 * 8 7 5 12 12 C 1.52774 * 113.55560 * 137.76863 * 10 9 8 13 13 O 1.43384 * 108.25328 * 176.83729 * 12 10 9 14 14 C 1.42816 * 113.34273 * 294.37420 * 13 12 10 15 15 C 1.50273 * 110.50085 * 51.28802 * 14 13 12 16 16 O 1.21284 * 118.97063 * 161.33676 * 15 14 13 17 17 N 1.34272 * 122.06104 * 341.61847 * 15 14 13 18 18 C 1.46498 * 119.38325 * 181.96166 * 17 15 14 19 19 C 1.52999 * 109.47226 * 274.15057 * 18 17 15 20 20 C 1.50706 * 109.46965 * 174.90379 * 19 18 17 21 21 H 1.07997 * 120.00164 * 0.02562 * 20 19 18 22 22 C 1.37868 * 119.99816 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00302 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47007 * 60.00387 * 24 22 20 26 26 H 1.48499 * 109.47343 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47154 * 300.00730 * 24 22 20 28 28 H 1.08998 * 109.47390 * 299.99473 * 1 2 3 29 29 H 1.09001 * 109.47185 * 60.00407 * 1 2 3 30 30 H 1.09007 * 109.46917 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47096 * 239.99833 * 2 1 3 32 32 H 1.09009 * 109.47378 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47329 * 299.99903 * 3 2 1 34 34 H 1.09002 * 109.47349 * 59.99988 * 3 2 1 35 35 H 1.09001 * 109.47262 * 59.99972 * 7 5 4 36 36 H 1.08992 * 109.47176 * 299.99470 * 7 5 4 37 37 H 1.08998 * 113.77848 * 108.41967 * 9 8 7 38 38 H 1.09000 * 113.78174 * 336.98154 * 9 8 7 39 39 H 1.09004 * 113.77750 * 23.00424 * 11 8 7 40 40 H 1.08995 * 113.78200 * 251.57850 * 11 8 7 41 41 H 1.08994 * 109.70380 * 57.14555 * 12 10 9 42 42 H 1.09000 * 109.73909 * 296.54596 * 12 10 9 43 43 H 1.08999 * 109.26477 * 291.02709 * 14 13 12 44 44 H 1.09002 * 109.27160 * 171.55765 * 14 13 12 45 45 H 1.08998 * 109.46667 * 34.14803 * 18 17 15 46 46 H 1.08998 * 109.47096 * 154.14573 * 18 17 15 47 47 H 1.09004 * 109.46986 * 294.90285 * 19 18 17 48 48 H 1.09000 * 109.46943 * 54.90579 * 19 18 17 49 49 H 0.97006 * 120.00019 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 3.1937 -1.3169 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7600 -2.0487 2.2747 8 7 5.0488 -2.6522 1.9102 9 6 5.7477 -3.1735 3.1067 10 6 7.0178 -2.5606 2.5009 11 6 6.0883 -1.6141 1.7285 12 6 7.8996 -1.8473 3.5245 13 8 9.0811 -1.3862 2.8556 14 6 9.9104 -2.4458 2.3770 15 6 9.1037 -3.4201 1.5658 16 8 9.6797 -4.1748 0.8110 17 7 7.7646 -3.4777 1.6463 18 6 7.0397 -4.4798 0.8611 19 6 6.7721 -3.9321 -0.5422 20 6 6.1387 -5.0063 -1.3883 21 1 5.9459 -5.9819 -0.9672 22 6 5.8043 -4.7433 -2.6998 23 7 6.0386 -3.5551 -3.2125 24 14 5.0185 -6.0746 -3.7484 25 1 3.7371 -6.5000 -3.1299 26 1 4.7588 -5.5431 -5.1105 27 1 5.9353 -7.2394 -3.8384 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.0670 -2.8313 2.5835 36 1 3.9062 -1.3478 3.0965 37 1 5.7691 -4.2617 3.1638 38 1 5.4341 -2.7031 4.0386 39 1 5.8754 -0.6824 2.2527 40 1 6.3807 -1.4620 0.6896 41 1 8.1741 -2.5405 4.3195 42 1 7.3612 -0.9987 3.9464 43 1 10.3552 -2.9657 3.2255 44 1 10.7030 -2.0295 1.7552 45 1 7.6388 -5.3875 0.7887 46 1 6.0921 -4.7078 1.3490 47 1 6.0989 -3.0773 -0.4763 48 1 7.7127 -3.6197 -0.9958 49 1 5.8037 -3.3702 -4.1354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274060988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = -107.197668 kcal Electronic energy + Delta-G solvation = -32035.286407 eV Core-core repulsion = 27771.842614 eV Total energy + Delta-G solvation = -4263.443793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44814 -40.23077 -38.83014 -37.38606 -36.54684 -34.59600 -33.19352 -32.77703 -31.08047 -29.65618 -28.52000 -27.39687 -26.84188 -26.35989 -24.34181 -23.85241 -21.86818 -21.02839 -20.69289 -20.28590 -18.15039 -17.69120 -17.49721 -16.67325 -16.43397 -16.27094 -15.95222 -15.72379 -15.20824 -15.11304 -14.70772 -14.36614 -14.34209 -14.11327 -13.73173 -13.56073 -13.30870 -13.01177 -12.84190 -12.59756 -12.43871 -12.37765 -12.12201 -12.10341 -11.99680 -11.74567 -11.45381 -11.19185 -11.13776 -10.94838 -10.87525 -10.75651 -10.56731 -10.45608 -10.36392 -10.05108 -9.67020 -9.54529 -9.16935 -8.85443 -8.66689 -8.09393 -8.00516 -5.76685 -3.76877 2.49450 2.64306 2.88920 3.17694 3.45360 3.48565 3.51505 3.58894 3.87257 4.35329 4.46994 4.56540 4.63843 4.70583 4.76224 4.83351 4.87608 5.03837 5.09772 5.11281 5.14336 5.20191 5.26794 5.32839 5.40011 5.40589 5.55151 5.58012 5.59630 5.67300 5.74186 5.77943 5.91847 6.04471 6.09492 6.32314 6.42449 6.66227 6.67422 6.71960 6.88424 6.97286 7.17711 7.81288 7.94505 8.06785 8.20100 8.31086 8.51664 8.66426 9.28925 9.83400 11.34761 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007156 B = 0.005386 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3911.734875 B = 5197.434688 C = 8227.649271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 C -0.167 4.167 4 O -0.364 6.364 5 C 0.447 3.553 6 O -0.456 6.456 7 C 0.032 3.968 8 N -0.440 5.440 9 C -0.001 4.001 10 C 0.109 3.891 11 C 0.006 3.994 12 C 0.064 3.936 13 O -0.368 6.368 14 C 0.049 3.951 15 C 0.480 3.520 16 O -0.529 6.529 17 N -0.571 5.571 18 C 0.120 3.880 19 C 0.018 3.982 20 C -0.509 4.509 21 H 0.049 0.951 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.887 3.113 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.278 1.278 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.128 0.872 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.040 0.960 48 H 0.010 0.990 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 9.773 18.572 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.025 3.975 3 C -0.225 4.225 4 O -0.282 6.282 5 C 0.286 3.714 6 O -0.338 6.338 7 C -0.098 4.098 8 N -0.163 5.163 9 C -0.131 4.131 10 C 0.021 3.979 11 C -0.123 4.123 12 C -0.014 4.014 13 O -0.285 6.285 14 C -0.031 4.031 15 C 0.267 3.733 16 O -0.406 6.406 17 N -0.303 5.303 18 C 0.001 3.999 19 C -0.019 4.019 20 C -0.548 4.548 21 H 0.068 0.932 22 C -0.141 4.141 23 N -0.529 5.529 24 Si 0.715 3.285 25 H -0.205 1.205 26 H -0.215 1.215 27 H -0.204 1.204 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.028 0.972 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.812 9.247 17.058 20.255 hybrid contribution -0.634 -0.321 -0.189 0.736 sum -6.447 8.925 16.868 20.144 Atomic orbital electron populations 1.21869 0.92698 1.03111 1.02767 1.22678 0.94653 0.92589 0.87601 1.22184 1.02324 0.95333 1.02641 1.86498 1.37270 1.63264 1.41204 1.23425 0.79820 0.77560 0.90568 1.90866 1.58311 1.55375 1.29295 1.22203 0.95675 0.98901 0.92987 1.68810 0.98737 1.22507 1.26238 1.24411 0.92017 1.03273 0.93352 1.22149 0.92118 0.91639 0.92032 1.24516 0.90350 0.93133 1.04342 1.22964 0.86079 0.99459 0.92931 1.88140 1.34201 1.30951 1.75250 1.22813 0.93558 0.88531 0.98201 1.20905 0.83041 0.85496 0.83865 1.90775 1.69240 1.42705 1.37842 1.47517 1.05302 1.33969 1.43531 1.21980 0.94509 0.89113 0.94332 1.19360 0.96924 0.97360 0.88295 1.20991 1.39803 0.97855 0.96145 0.93238 1.24918 0.96124 0.95146 0.97893 1.69981 1.48106 1.20620 1.14168 0.86756 0.79779 0.82374 0.79583 1.20506 1.21499 1.20416 0.91691 0.90543 0.91688 0.89349 0.91871 0.90852 0.91897 0.86649 0.90599 0.87754 0.89870 0.90930 0.86844 0.91589 0.87010 0.89892 0.85463 0.91968 0.90469 0.94217 0.97153 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.57 37.16 0.36 -1.03 16 2 C 0.08 1.00 3.18 -26.73 -0.09 0.92 16 3 C -0.17 -1.82 9.55 37.15 0.35 -1.46 16 4 O -0.36 -4.96 9.88 -39.26 -0.39 -5.35 16 5 C 0.45 6.99 7.74 36.01 0.28 7.27 16 6 O -0.46 -9.47 14.77 -18.75 -0.28 -9.75 16 7 C 0.03 0.38 5.42 -4.97 -0.03 0.35 16 8 N -0.44 -6.57 4.34 -241.82 -1.05 -7.62 16 9 C 0.00 -0.01 6.53 -2.95 -0.02 -0.03 16 10 C 0.11 1.49 1.56 -135.17 -0.21 1.28 16 11 C 0.01 0.09 5.36 -2.95 -0.02 0.08 16 12 C 0.06 0.64 6.09 37.04 0.23 0.87 16 13 O -0.37 -4.73 10.84 -35.23 -0.38 -5.11 16 14 C 0.05 0.65 6.94 35.80 0.25 0.90 16 15 C 0.48 9.00 7.61 -11.42 -0.09 8.91 16 16 O -0.53 -12.35 16.56 5.55 0.09 -12.26 16 17 N -0.57 -10.45 2.66 -162.13 -0.43 -10.88 16 18 C 0.12 2.67 4.41 -4.04 -0.02 2.65 16 19 C 0.02 0.51 5.06 -27.88 -0.14 0.37 16 20 C -0.51 -15.41 9.11 -34.44 -0.31 -15.72 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 23 N -0.89 -28.76 13.29 55.43 0.74 -28.02 16 24 Si 0.89 23.19 29.54 -169.99 -5.02 18.17 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.09 1.35 7.16 -51.93 -0.37 0.98 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 37 H 0.10 1.22 6.99 -51.93 -0.36 0.86 16 38 H 0.08 0.58 7.74 -51.93 -0.40 0.18 16 39 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 40 H 0.11 2.33 6.86 -51.93 -0.36 1.97 16 41 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 42 H 0.11 0.82 7.86 -51.93 -0.41 0.41 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.48 7.49 -51.93 -0.39 1.09 16 46 H 0.08 1.59 5.43 -51.93 -0.28 1.31 16 47 H 0.04 1.17 6.05 -51.93 -0.31 0.86 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -39.45 393.20 -8.22 -47.67 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.87 Total: 0.13 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.45 Total: 7.09 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.75 Total: -46.52 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.95 Total: -32.46 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.45 -8.22 -47.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274060988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.529 kcal (2) G-P(sol) polarization free energy of solvation -39.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds