Wall clock time and date at job start Sat Apr 11 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.46968 * 2 1 4 4 O 1.45205 * 109.46964 * 119.99904 * 2 1 3 5 5 C 1.34232 * 116.99635 * 150.00389 * 4 2 1 6 6 O 1.20826 * 120.00040 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99690 * 179.97438 * 5 4 2 8 8 N 1.46904 * 109.46861 * 179.97438 * 7 5 4 9 9 C 1.48045 * 110.99594 * 170.00205 * 8 7 5 10 10 C 1.53482 * 86.05007 * 222.69823 * 9 8 7 11 11 C 1.48031 * 111.00344 * 70.55918 * 8 7 5 12 12 C 1.52774 * 113.55560 * 137.76863 * 10 9 8 13 13 O 1.43384 * 108.25328 * 176.83729 * 12 10 9 14 14 C 1.42816 * 113.34273 * 294.37420 * 13 12 10 15 15 C 1.50273 * 110.50085 * 51.28802 * 14 13 12 16 16 O 1.21284 * 118.97063 * 161.33676 * 15 14 13 17 17 N 1.34272 * 122.06104 * 341.61847 * 15 14 13 18 18 C 1.46498 * 119.38325 * 181.96166 * 17 15 14 19 19 C 1.52999 * 109.47226 * 274.15057 * 18 17 15 20 20 C 1.50706 * 109.46965 * 174.90379 * 19 18 17 21 21 H 1.07997 * 120.00164 * 0.02562 * 20 19 18 22 22 C 1.37868 * 119.99816 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00302 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00048 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47007 * 60.00387 * 24 22 20 26 26 H 1.48499 * 109.47343 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47154 * 300.00730 * 24 22 20 28 28 H 1.08998 * 109.47390 * 299.99473 * 1 2 3 29 29 H 1.09001 * 109.47185 * 60.00407 * 1 2 3 30 30 H 1.09007 * 109.46917 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47096 * 239.99833 * 2 1 3 32 32 H 1.09009 * 109.47378 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47329 * 299.99903 * 3 2 1 34 34 H 1.09002 * 109.47349 * 59.99988 * 3 2 1 35 35 H 1.09001 * 109.47262 * 59.99972 * 7 5 4 36 36 H 1.08992 * 109.47176 * 299.99470 * 7 5 4 37 37 H 1.08998 * 113.77848 * 108.41967 * 9 8 7 38 38 H 1.09000 * 113.78174 * 336.98154 * 9 8 7 39 39 H 1.09004 * 113.77750 * 23.00424 * 11 8 7 40 40 H 1.08995 * 113.78200 * 251.57850 * 11 8 7 41 41 H 1.08994 * 109.70380 * 57.14555 * 12 10 9 42 42 H 1.09000 * 109.73909 * 296.54596 * 12 10 9 43 43 H 1.08999 * 109.26477 * 291.02709 * 14 13 12 44 44 H 1.09002 * 109.27160 * 171.55765 * 14 13 12 45 45 H 1.08998 * 109.46667 * 34.14803 * 18 17 15 46 46 H 1.08998 * 109.47096 * 154.14573 * 18 17 15 47 47 H 1.09004 * 109.46986 * 294.90285 * 19 18 17 48 48 H 1.09000 * 109.46943 * 54.90579 * 19 18 17 49 49 H 0.97006 * 120.00019 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 3.1937 -1.3169 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7600 -2.0487 2.2747 8 7 5.0488 -2.6522 1.9102 9 6 5.7477 -3.1735 3.1067 10 6 7.0178 -2.5606 2.5009 11 6 6.0883 -1.6141 1.7285 12 6 7.8996 -1.8473 3.5245 13 8 9.0811 -1.3862 2.8556 14 6 9.9104 -2.4458 2.3770 15 6 9.1037 -3.4201 1.5658 16 8 9.6797 -4.1748 0.8110 17 7 7.7646 -3.4777 1.6463 18 6 7.0397 -4.4798 0.8611 19 6 6.7721 -3.9321 -0.5422 20 6 6.1387 -5.0063 -1.3883 21 1 5.9459 -5.9819 -0.9672 22 6 5.8043 -4.7433 -2.6998 23 7 6.0386 -3.5551 -3.2125 24 14 5.0185 -6.0746 -3.7484 25 1 3.7371 -6.5000 -3.1299 26 1 4.7588 -5.5431 -5.1105 27 1 5.9353 -7.2394 -3.8384 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.0670 -2.8313 2.5835 36 1 3.9062 -1.3478 3.0965 37 1 5.7691 -4.2617 3.1638 38 1 5.4341 -2.7031 4.0386 39 1 5.8754 -0.6824 2.2527 40 1 6.3807 -1.4620 0.6896 41 1 8.1741 -2.5405 4.3195 42 1 7.3612 -0.9987 3.9464 43 1 10.3552 -2.9657 3.2255 44 1 10.7030 -2.0295 1.7552 45 1 7.6388 -5.3875 0.7887 46 1 6.0921 -4.7078 1.3490 47 1 6.0989 -3.0773 -0.4763 48 1 7.7127 -3.6197 -0.9958 49 1 5.8037 -3.3702 -4.1354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274060988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:12 Heat of formation + Delta-G solvation = -138.568972 kcal Electronic energy + Delta-G solvation = -32036.646769 eV Core-core repulsion = 27771.842614 eV Total energy + Delta-G solvation = -4264.804155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.60244 -41.44345 -40.10176 -38.54335 -37.76632 -36.26859 -34.92011 -34.16789 -32.44610 -31.41780 -29.54602 -28.31837 -28.22916 -27.38050 -26.14423 -25.08861 -23.01802 -22.82976 -21.95952 -21.39373 -19.42574 -18.84608 -18.82929 -18.40676 -17.67880 -17.49195 -17.34554 -16.87521 -16.62626 -16.39553 -16.18469 -15.80682 -15.56357 -15.24206 -15.00760 -14.76480 -14.45001 -14.33139 -14.26177 -14.03583 -13.80040 -13.56200 -13.25214 -13.21961 -13.17425 -13.04321 -12.81676 -12.74685 -12.66559 -12.48933 -12.27809 -12.10542 -11.92149 -11.79619 -11.65521 -11.55975 -11.34549 -11.30911 -11.27278 -10.51399 -10.35628 -9.70781 -9.58278 -8.16947 -6.27585 1.30665 1.30849 1.37177 1.42901 1.45179 1.62967 1.88236 2.39578 2.65331 2.88563 3.15961 3.28013 3.46292 3.50936 3.73056 3.80330 3.92992 3.96344 4.12151 4.13694 4.21076 4.24905 4.33679 4.40508 4.47389 4.55118 4.57658 4.63887 4.67825 4.73070 4.73688 4.80251 4.85031 4.87893 4.92965 5.08976 5.11422 5.18753 5.27275 5.33069 5.52662 5.56409 5.75387 5.80309 5.95612 5.97227 6.24682 6.51740 6.88359 6.90735 7.10005 7.38969 8.94959 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007156 B = 0.005386 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3911.734875 B = 5197.434688 C = 8227.649271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 C -0.161 4.161 4 O -0.355 6.355 5 C 0.444 3.556 6 O -0.523 6.523 7 C 0.036 3.964 8 N -0.492 5.492 9 C 0.020 3.980 10 C 0.096 3.904 11 C 0.010 3.990 12 C 0.065 3.935 13 O -0.377 6.377 14 C 0.064 3.936 15 C 0.466 3.534 16 O -0.592 6.592 17 N -0.575 5.575 18 C 0.143 3.857 19 C 0.038 3.962 20 C -0.533 4.533 21 H 0.057 0.943 22 C -0.003 4.003 23 N -0.932 5.932 24 Si 0.964 3.036 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.267 1.267 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.101 0.899 42 H 0.153 0.847 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.039 0.961 46 H 0.097 0.903 47 H 0.017 0.983 48 H -0.048 1.048 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 10.101 22.735 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 C -0.218 4.218 4 O -0.272 6.272 5 C 0.287 3.713 6 O -0.410 6.410 7 C -0.092 4.092 8 N -0.216 5.216 9 C -0.108 4.108 10 C 0.009 3.991 11 C -0.120 4.120 12 C -0.011 4.011 13 O -0.295 6.295 14 C -0.015 4.015 15 C 0.255 3.745 16 O -0.473 6.473 17 N -0.305 5.305 18 C 0.022 3.978 19 C 0.001 3.999 20 C -0.572 4.572 21 H 0.076 0.924 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.788 3.212 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.192 1.192 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.162 0.838 39 H 0.126 0.874 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.171 0.829 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.057 0.943 46 H 0.115 0.885 47 H 0.035 0.965 48 H -0.030 1.030 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.732 9.602 21.298 24.609 hybrid contribution -0.123 -0.332 -1.515 1.556 sum -7.855 9.271 19.782 23.216 Atomic orbital electron populations 1.21866 0.89781 1.03381 1.04599 1.22891 0.96854 0.92951 0.85884 1.22150 1.00570 0.94522 1.04579 1.86504 1.36459 1.62915 1.41359 1.24402 0.79409 0.76576 0.90899 1.90868 1.60067 1.57950 1.32113 1.22413 0.94558 1.00138 0.92083 1.68660 1.00080 1.23347 1.29546 1.24481 0.88877 1.03231 0.94177 1.22639 0.93559 0.90887 0.92012 1.24320 0.91739 0.95187 1.00720 1.23355 0.84513 1.01416 0.91848 1.88141 1.35139 1.30776 1.75444 1.22749 0.92486 0.87598 0.98714 1.22132 0.83278 0.85565 0.83494 1.90732 1.70527 1.45392 1.40645 1.47519 1.05643 1.33887 1.43478 1.21351 0.95409 0.89086 0.91996 1.19058 0.93060 0.96326 0.91488 1.21485 1.39953 0.98615 0.97132 0.92436 1.25986 0.96596 0.97838 0.99568 1.70172 1.49266 1.23237 1.14561 0.85527 0.79247 0.78971 0.77427 1.18757 1.20875 1.19167 0.89644 0.88876 0.92213 0.93439 0.94533 0.89354 0.89476 0.84399 0.85581 0.88304 0.83778 0.87353 0.94133 0.88126 0.82936 0.85768 0.85196 0.94292 0.88468 0.96486 1.03013 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.57 71.98 0.69 -1.75 16 2 C 0.07 1.77 3.18 30.59 0.10 1.87 16 3 C -0.16 -3.47 9.55 71.98 0.69 -2.78 16 4 O -0.35 -9.48 9.88 -51.44 -0.51 -9.99 16 5 C 0.44 14.07 7.74 71.24 0.55 14.62 16 6 O -0.52 -23.50 14.77 21.96 0.32 -23.18 16 7 C 0.04 0.78 5.42 85.56 0.46 1.24 16 8 N -0.49 -14.18 4.34 -918.97 -3.99 -18.17 16 9 C 0.02 0.37 6.53 86.24 0.56 0.93 16 10 C 0.10 2.43 1.56 5.17 0.01 2.44 16 11 C 0.01 0.30 5.36 86.25 0.46 0.77 16 12 C 0.07 1.02 6.09 71.91 0.44 1.45 16 13 O -0.38 -8.61 10.84 -148.98 -1.61 -10.23 16 14 C 0.06 1.62 6.94 71.10 0.49 2.11 16 15 C 0.47 18.05 7.61 87.60 0.67 18.72 16 16 O -0.59 -29.58 16.56 -3.04 -0.05 -29.63 16 17 N -0.58 -21.60 2.66 -785.54 -2.09 -23.69 16 18 C 0.14 6.73 4.41 86.38 0.38 7.11 16 19 C 0.04 2.34 5.06 29.85 0.15 2.49 16 20 C -0.53 -34.11 9.11 25.60 0.23 -33.87 16 21 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 22 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 23 N -0.93 -64.08 13.29 21.44 0.28 -63.79 16 24 Si 0.96 49.21 29.54 68.60 2.03 51.24 16 25 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 1.60 7.16 -2.39 -0.02 1.58 16 32 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.13 1.44 7.70 -2.39 -0.02 1.42 16 37 H 0.10 1.97 6.99 -2.39 -0.02 1.95 16 38 H 0.14 0.91 7.74 -2.39 -0.02 0.89 16 39 H 0.11 2.35 7.54 -2.38 -0.02 2.33 16 40 H 0.04 1.83 6.86 -2.39 -0.02 1.81 16 41 H 0.10 0.97 8.13 -2.39 -0.02 0.95 16 42 H 0.15 1.19 7.86 -2.39 -0.02 1.17 16 43 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.04 1.98 7.49 -2.39 -0.02 1.96 16 46 H 0.10 4.12 5.43 -2.39 -0.01 4.11 16 47 H 0.02 1.10 6.05 -2.38 -0.01 1.08 16 48 H -0.05 -3.46 8.14 -2.39 -0.02 -3.48 16 49 H 0.26 16.72 8.31 -92.70 -0.77 15.95 16 Total: -1.00 -100.81 393.20 1.67 -99.14 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.95 Total: 12.68 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.35 Total: 15.63 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -5.80 Total: -105.66 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: -1.85 Total: -73.03 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.24 kcal Total: -100.81 1.67 -99.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274060988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.430 kcal (2) G-P(sol) polarization free energy of solvation -100.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds