Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47736 * 2 1 4 4 O 1.45198 * 109.46673 * 120.00176 * 2 1 3 5 5 C 1.34231 * 117.00258 * 149.99599 * 4 2 1 6 6 O 1.20834 * 119.99686 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00264 * 179.97438 * 5 4 2 8 8 N 1.46908 * 109.47174 * 180.02562 * 7 5 4 9 9 C 1.48060 * 110.99976 * 170.00490 * 8 7 5 10 10 C 1.53384 * 86.02485 * 222.76679 * 9 8 7 11 11 C 1.48058 * 110.99936 * 70.55233 * 8 7 5 12 12 C 1.52558 * 113.83779 * 138.14676 * 10 9 8 13 13 N 1.46269 * 109.56791 * 176.50128 * 12 10 9 14 14 C 1.46506 * 118.71040 * 163.90603 * 13 12 10 15 15 C 1.53002 * 109.47035 * 90.00181 * 14 13 12 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47196 * 59.99759 * 20 18 16 22 22 H 1.48494 * 109.47285 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46819 * 300.00256 * 20 18 16 24 24 C 1.33712 * 122.57401 * 344.18691 * 13 12 10 25 25 O 1.21279 * 118.38756 * 182.95635 * 24 13 12 26 26 C 1.50142 * 123.25140 * 2.72842 * 24 13 12 27 27 O 1.42686 * 113.78571 * 268.80551 * 10 9 8 28 28 H 1.08996 * 109.46751 * 300.00903 * 1 2 3 29 29 H 1.09004 * 109.46341 * 60.00075 * 1 2 3 30 30 H 1.08993 * 109.47431 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46952 * 239.99303 * 2 1 3 32 32 H 1.08996 * 109.47135 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46636 * 299.99455 * 3 2 1 34 34 H 1.08991 * 109.47372 * 59.99418 * 3 2 1 35 35 H 1.08996 * 109.46777 * 60.00512 * 7 5 4 36 36 H 1.08997 * 109.47725 * 300.00345 * 7 5 4 37 37 H 1.09004 * 113.78388 * 108.48857 * 9 8 7 38 38 H 1.09003 * 113.78419 * 337.04726 * 9 8 7 39 39 H 1.09000 * 113.78311 * 22.95106 * 11 8 7 40 40 H 1.08998 * 113.78362 * 251.50942 * 11 8 7 41 41 H 1.08994 * 109.45411 * 56.46840 * 12 10 9 42 42 H 1.09003 * 109.45107 * 296.53323 * 12 10 9 43 43 H 1.09004 * 109.47073 * 209.99864 * 14 13 12 44 44 H 1.09000 * 109.47212 * 329.99946 * 14 13 12 45 45 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 46 46 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 47 47 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 48 48 H 1.08998 * 109.48637 * 222.45655 * 26 24 13 49 49 H 1.08998 * 109.04717 * 102.85492 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 3.1935 -1.3172 1.0852 6 8 3.8014 -1.2999 0.0410 7 6 3.7597 -2.0489 2.2747 8 7 5.0490 -2.6517 1.9106 9 6 5.7478 -3.1731 3.1073 10 6 7.0163 -2.5578 2.5031 11 6 6.0882 -1.6127 1.7295 12 6 7.9046 -1.8511 3.5223 13 7 9.1211 -1.3744 2.8648 14 6 9.9433 -0.3720 3.5472 15 6 10.9850 -1.0752 4.4198 16 6 11.8312 -0.0442 5.1212 17 1 11.6449 1.0074 4.9604 18 6 12.8432 -0.4434 5.9683 19 7 13.0704 -1.7239 6.1637 20 14 13.8917 0.8346 6.8383 21 1 13.0258 1.6880 7.6910 22 1 14.9028 0.1522 7.6851 23 1 14.5802 1.6797 5.8298 24 6 9.5092 -1.8136 1.6630 25 8 10.5594 -1.4076 1.2123 26 6 8.7117 -2.7885 0.8458 27 8 7.7493 -3.4538 1.6689 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6769 1.9562 -0.8901 34 1 1.6768 1.9563 0.8898 35 1 3.0667 -2.8315 2.5834 36 1 3.9059 -1.3482 3.0967 37 1 5.7709 -4.2614 3.1635 38 1 5.4328 -2.7041 4.0395 39 1 5.8740 -0.6809 2.2530 40 1 6.3818 -1.4610 0.6909 41 1 8.1706 -2.5480 4.3170 42 1 7.3660 -1.0042 3.9477 43 1 10.4485 0.2485 2.8070 44 1 9.3077 0.2541 4.1734 45 1 10.4798 -1.6957 5.1600 46 1 11.6205 -1.7014 3.7935 47 1 13.7825 -2.0049 6.7593 48 1 9.3815 -3.5266 0.4046 49 1 8.1959 -2.2486 0.0517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274061932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = -116.104752 kcal Electronic energy + Delta-G solvation = -30430.052672 eV Core-core repulsion = 26166.222639 eV Total energy + Delta-G solvation = -4263.830033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.61140 -40.67976 -39.24423 -37.26174 -36.48988 -35.43776 -33.63405 -33.07529 -31.45242 -30.08400 -28.27803 -27.76353 -27.18288 -26.51062 -24.53638 -24.36498 -22.27478 -21.52636 -20.82162 -20.18520 -18.47931 -18.23428 -17.46485 -16.99567 -16.78581 -16.53433 -16.18044 -15.91562 -15.57689 -15.28976 -14.92961 -14.56942 -14.48767 -14.34528 -14.09529 -13.65119 -13.45325 -13.31546 -12.99333 -12.93302 -12.80551 -12.76946 -12.56047 -12.38706 -12.27661 -12.17475 -11.87067 -11.53092 -11.37039 -11.33240 -11.05456 -10.95122 -10.88992 -10.69701 -10.65194 -10.22896 -9.90693 -9.84287 -9.37408 -9.25387 -8.95240 -8.35753 -8.12804 -6.00839 -4.04317 1.90474 2.15812 2.88786 3.12118 3.30422 3.33081 3.37700 3.40592 3.55288 4.07554 4.19014 4.27284 4.32608 4.43779 4.45582 4.62281 4.67400 4.68753 4.74251 4.89344 4.93132 5.05805 5.10289 5.18277 5.23653 5.28330 5.34183 5.34967 5.36566 5.39946 5.52541 5.54389 5.56332 5.68265 5.70016 5.83179 6.04177 6.14476 6.40111 6.47786 6.67544 6.82768 6.88664 7.47719 7.58034 7.70306 7.91187 7.99064 8.34399 8.50746 9.01912 9.59302 11.10498 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.002253 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.041864 B =12427.582144 C =12979.175408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.171 4.171 4 O -0.358 6.358 5 C 0.461 3.539 6 O -0.487 6.487 7 C 0.024 3.976 8 N -0.454 5.454 9 C 0.028 3.972 10 C 0.072 3.928 11 C -0.013 4.013 12 C 0.101 3.899 13 N -0.597 5.597 14 C 0.114 3.886 15 C 0.015 3.985 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.480 3.520 25 O -0.537 6.537 26 C 0.052 3.948 27 O -0.334 6.334 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.015 0.985 46 H 0.023 0.977 47 H 0.261 0.739 48 H 0.131 0.869 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.895 0.095 -8.755 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.228 4.228 4 O -0.275 6.275 5 C 0.302 3.698 6 O -0.372 6.372 7 C -0.105 4.105 8 N -0.177 5.177 9 C -0.100 4.100 10 C 0.031 3.969 11 C -0.142 4.142 12 C -0.024 4.024 13 N -0.330 5.330 14 C -0.007 4.007 15 C -0.023 4.023 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.266 3.734 25 O -0.415 6.415 26 C -0.028 4.028 27 O -0.251 6.251 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.033 0.967 46 H 0.041 0.959 47 H 0.071 0.929 48 H 0.148 0.852 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.299 -0.423 -9.794 29.006 hybrid contribution 0.712 1.493 1.126 2.001 sum -26.587 1.071 -8.667 27.985 Atomic orbital electron populations 1.21892 0.92316 1.03216 1.03230 1.22738 0.94966 0.92690 0.86969 1.22214 1.02252 0.95157 1.03173 1.86544 1.36736 1.62793 1.41423 1.23450 0.79455 0.76681 0.90190 1.90689 1.58973 1.57334 1.30229 1.22303 0.95451 0.99448 0.93275 1.68641 0.98865 1.22133 1.28082 1.24052 0.89274 1.03814 0.92874 1.22872 0.91091 0.91296 0.91649 1.24597 0.91703 0.94451 1.03458 1.21960 0.85723 0.99186 0.95505 1.47667 1.24477 1.42773 1.18088 1.21963 0.93235 0.89738 0.95751 1.19343 0.92891 0.96190 0.93863 1.21039 1.15943 0.92802 1.26258 0.92622 1.25004 0.97264 0.95287 0.96764 1.69964 1.31652 1.14305 1.37194 0.86611 0.80102 0.81464 0.79533 1.20244 1.21270 1.20165 1.20680 0.87007 0.83349 0.82320 1.90763 1.22910 1.58035 1.69779 1.22811 0.90650 0.96394 0.92896 1.88104 1.51214 1.30769 1.55055 0.91339 0.90319 0.91643 0.89658 0.91915 0.90615 0.91471 0.86069 0.89683 0.86928 0.88768 0.90066 0.87941 0.89885 0.89805 0.90630 0.91852 0.96672 0.95881 0.92892 0.85155 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.57 37.16 0.36 -0.39 16 2 C 0.08 0.61 3.18 -26.73 -0.09 0.52 16 3 C -0.17 -1.15 9.55 37.15 0.35 -0.79 16 4 O -0.36 -3.16 9.88 -39.26 -0.39 -3.54 16 5 C 0.46 4.57 7.74 36.00 0.28 4.85 16 6 O -0.49 -6.35 14.78 -18.76 -0.28 -6.63 16 7 C 0.02 0.18 5.42 -4.97 -0.03 0.15 16 8 N -0.45 -4.47 5.95 -242.41 -1.44 -5.91 16 9 C 0.03 0.24 7.38 -2.99 -0.02 0.21 16 10 C 0.07 0.84 1.16 -90.52 -0.10 0.74 16 11 C -0.01 -0.14 5.87 -2.99 -0.02 -0.16 16 12 C 0.10 1.34 5.88 -4.39 -0.03 1.31 16 13 N -0.60 -10.72 2.84 -174.68 -0.50 -11.22 16 14 C 0.11 2.40 5.21 -4.04 -0.02 2.38 16 15 C 0.01 0.40 5.29 -27.88 -0.15 0.25 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.48 8.98 7.57 -11.73 -0.09 8.89 16 25 O -0.54 -12.39 16.33 5.56 0.09 -12.30 16 26 C 0.05 0.74 6.65 35.74 0.24 0.98 16 27 O -0.33 -4.65 10.66 -35.23 -0.38 -5.03 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.73 7.16 -51.93 -0.37 0.36 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.47 7.69 -51.93 -0.40 0.07 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.53 7.75 -51.93 -0.40 0.13 16 39 H 0.08 0.77 7.55 -51.93 -0.39 0.37 16 40 H 0.10 1.29 6.97 -51.93 -0.36 0.93 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 0.91 7.77 -51.93 -0.40 0.51 16 43 H 0.08 1.72 7.28 -51.93 -0.38 1.34 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 49 H 0.09 1.08 7.15 -51.93 -0.37 0.71 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -36.65 400.65 -8.97 -45.62 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.11 Total: -2.71 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 0.28 Total: 5.34 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -1.20 Total: -43.59 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.95 Total: -27.50 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.65 -8.97 -45.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.488 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds