Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47736 * 2 1 4 4 O 1.45198 * 109.46673 * 120.00176 * 2 1 3 5 5 C 1.34231 * 117.00258 * 149.99599 * 4 2 1 6 6 O 1.20834 * 119.99686 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00264 * 179.97438 * 5 4 2 8 8 N 1.46908 * 109.47174 * 180.02562 * 7 5 4 9 9 C 1.48060 * 110.99976 * 170.00490 * 8 7 5 10 10 C 1.53384 * 86.02485 * 222.76679 * 9 8 7 11 11 C 1.48058 * 110.99936 * 70.55233 * 8 7 5 12 12 C 1.52558 * 113.83779 * 138.14676 * 10 9 8 13 13 N 1.46269 * 109.56791 * 176.50128 * 12 10 9 14 14 C 1.46506 * 118.71040 * 163.90603 * 13 12 10 15 15 C 1.53002 * 109.47035 * 90.00181 * 14 13 12 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47196 * 59.99759 * 20 18 16 22 22 H 1.48494 * 109.47285 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46819 * 300.00256 * 20 18 16 24 24 C 1.33712 * 122.57401 * 344.18691 * 13 12 10 25 25 O 1.21279 * 118.38756 * 182.95635 * 24 13 12 26 26 C 1.50142 * 123.25140 * 2.72842 * 24 13 12 27 27 O 1.42686 * 113.78571 * 268.80551 * 10 9 8 28 28 H 1.08996 * 109.46751 * 300.00903 * 1 2 3 29 29 H 1.09004 * 109.46341 * 60.00075 * 1 2 3 30 30 H 1.08993 * 109.47431 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46952 * 239.99303 * 2 1 3 32 32 H 1.08996 * 109.47135 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46636 * 299.99455 * 3 2 1 34 34 H 1.08991 * 109.47372 * 59.99418 * 3 2 1 35 35 H 1.08996 * 109.46777 * 60.00512 * 7 5 4 36 36 H 1.08997 * 109.47725 * 300.00345 * 7 5 4 37 37 H 1.09004 * 113.78388 * 108.48857 * 9 8 7 38 38 H 1.09003 * 113.78419 * 337.04726 * 9 8 7 39 39 H 1.09000 * 113.78311 * 22.95106 * 11 8 7 40 40 H 1.08998 * 113.78362 * 251.50942 * 11 8 7 41 41 H 1.08994 * 109.45411 * 56.46840 * 12 10 9 42 42 H 1.09003 * 109.45107 * 296.53323 * 12 10 9 43 43 H 1.09004 * 109.47073 * 209.99864 * 14 13 12 44 44 H 1.09000 * 109.47212 * 329.99946 * 14 13 12 45 45 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 46 46 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 47 47 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 48 48 H 1.08998 * 109.48637 * 222.45655 * 26 24 13 49 49 H 1.08998 * 109.04717 * 102.85492 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 3.1935 -1.3172 1.0852 6 8 3.8014 -1.2999 0.0410 7 6 3.7597 -2.0489 2.2747 8 7 5.0490 -2.6517 1.9106 9 6 5.7478 -3.1731 3.1073 10 6 7.0163 -2.5578 2.5031 11 6 6.0882 -1.6127 1.7295 12 6 7.9046 -1.8511 3.5223 13 7 9.1211 -1.3744 2.8648 14 6 9.9433 -0.3720 3.5472 15 6 10.9850 -1.0752 4.4198 16 6 11.8312 -0.0442 5.1212 17 1 11.6449 1.0074 4.9604 18 6 12.8432 -0.4434 5.9683 19 7 13.0704 -1.7239 6.1637 20 14 13.8917 0.8346 6.8383 21 1 13.0258 1.6880 7.6910 22 1 14.9028 0.1522 7.6851 23 1 14.5802 1.6797 5.8298 24 6 9.5092 -1.8136 1.6630 25 8 10.5594 -1.4076 1.2123 26 6 8.7117 -2.7885 0.8458 27 8 7.7493 -3.4538 1.6689 28 1 -0.3633 0.5140 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6769 1.9562 -0.8901 34 1 1.6768 1.9563 0.8898 35 1 3.0667 -2.8315 2.5834 36 1 3.9059 -1.3482 3.0967 37 1 5.7709 -4.2614 3.1635 38 1 5.4328 -2.7041 4.0395 39 1 5.8740 -0.6809 2.2530 40 1 6.3818 -1.4610 0.6909 41 1 8.1706 -2.5480 4.3170 42 1 7.3660 -1.0042 3.9477 43 1 10.4485 0.2485 2.8070 44 1 9.3077 0.2541 4.1734 45 1 10.4798 -1.6957 5.1600 46 1 11.6205 -1.7014 3.7935 47 1 13.7825 -2.0049 6.7593 48 1 9.3815 -3.5266 0.4046 49 1 8.1959 -2.2486 0.0517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274061932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = -143.593450 kcal Electronic energy + Delta-G solvation = -30431.244672 eV Core-core repulsion = 26166.222639 eV Total energy + Delta-G solvation = -4265.022032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.54093 -41.52999 -40.44936 -38.14033 -37.44321 -37.02053 -35.13138 -34.19885 -32.51067 -31.76011 -29.33886 -28.54479 -28.21802 -27.31521 -26.36312 -25.25698 -23.52851 -22.73260 -21.54912 -21.29333 -19.70100 -18.96871 -18.71819 -18.59408 -17.76706 -17.47980 -17.31635 -17.03867 -16.79324 -16.53328 -16.14514 -15.88713 -15.49701 -15.23104 -15.00526 -14.81016 -14.55723 -14.38541 -14.25085 -14.15039 -13.94815 -13.73059 -13.39617 -13.29255 -13.17994 -13.09822 -12.83313 -12.80075 -12.67447 -12.63145 -12.58880 -12.05804 -11.91830 -11.91632 -11.72435 -11.62174 -11.49336 -11.38083 -11.19523 -10.58969 -10.46039 -9.94195 -9.66704 -8.22881 -6.35699 1.19686 1.38547 1.42997 1.43585 1.50957 1.55360 1.83387 2.34996 2.40772 2.77113 3.10347 3.17032 3.25021 3.54907 3.63548 3.80326 3.93157 3.94586 4.07784 4.08560 4.13680 4.21096 4.24257 4.32897 4.36362 4.40342 4.52906 4.56916 4.64975 4.66686 4.73569 4.74294 4.78205 4.83269 4.86177 4.90983 5.11103 5.12293 5.16181 5.20912 5.42898 5.51880 5.55883 5.71216 5.78914 5.83457 6.15413 6.39718 6.78009 6.79216 7.02799 7.33720 8.89044 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.002253 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.041864 B =12427.582144 C =12979.175408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.167 4.167 4 O -0.357 6.357 5 C 0.459 3.541 6 O -0.527 6.527 7 C 0.026 3.974 8 N -0.473 5.473 9 C 0.044 3.956 10 C 0.062 3.938 11 C -0.008 4.008 12 C 0.095 3.905 13 N -0.598 5.598 14 C 0.129 3.871 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.258 1.258 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.471 3.529 25 O -0.592 6.592 26 C 0.064 3.936 27 O -0.343 6.343 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.001 0.999 46 H -0.029 1.029 47 H 0.264 0.736 48 H 0.139 0.861 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.529 1.193 -7.248 31.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 C -0.225 4.225 4 O -0.274 6.274 5 C 0.302 3.698 6 O -0.415 6.415 7 C -0.103 4.103 8 N -0.198 5.198 9 C -0.084 4.084 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.028 4.028 13 N -0.330 5.330 14 C 0.007 3.993 15 C -0.011 4.011 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.182 1.182 22 H -0.209 1.209 23 H -0.197 1.197 24 C 0.260 3.740 25 O -0.474 6.474 26 C -0.015 4.015 27 O -0.261 6.261 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.019 0.981 46 H -0.010 1.010 47 H 0.073 0.927 48 H 0.156 0.844 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -30.007 0.665 -8.264 31.131 hybrid contribution 1.461 1.122 0.644 1.952 sum -28.545 1.787 -7.620 29.599 Atomic orbital electron populations 1.21895 0.90219 1.03592 1.04377 1.22937 0.96567 0.92678 0.85995 1.22201 1.00847 0.95007 1.04396 1.86548 1.36310 1.62624 1.41914 1.24034 0.79223 0.76129 0.90404 1.90681 1.60011 1.58898 1.31929 1.22475 0.94565 1.00566 0.92671 1.68583 0.99691 1.22112 1.29367 1.24167 0.86300 1.04230 0.93686 1.23150 0.91375 0.91946 0.91440 1.24514 0.91888 0.95230 1.02060 1.22325 0.84245 1.00485 0.95727 1.47728 1.25436 1.41920 1.17868 1.21543 0.92998 0.89970 0.94831 1.19147 0.93326 0.95388 0.93286 1.21507 1.16594 0.93668 1.26441 0.91569 1.26037 0.98719 0.97578 0.97599 1.70113 1.32443 1.16656 1.38009 0.85418 0.78205 0.78567 0.78343 1.18210 1.20890 1.19703 1.21547 0.86619 0.83273 0.82589 1.90726 1.25423 1.60066 1.71191 1.22706 0.90642 0.95661 0.92447 1.88098 1.51030 1.31626 1.55371 0.90658 0.88685 0.91659 0.91392 0.94016 0.89066 0.90598 0.83552 0.86770 0.86580 0.85081 0.88438 0.90328 0.90398 0.86484 0.92725 0.88668 0.98096 1.01026 0.92731 0.84361 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.57 71.98 0.69 -0.48 16 2 C 0.07 1.01 3.18 30.59 0.10 1.11 16 3 C -0.17 -2.07 9.55 71.98 0.69 -1.39 16 4 O -0.36 -5.72 9.88 -51.42 -0.51 -6.23 16 5 C 0.46 8.39 7.74 71.24 0.55 8.94 16 6 O -0.53 -13.65 14.78 21.94 0.32 -13.33 16 7 C 0.03 0.30 5.42 85.55 0.46 0.76 16 8 N -0.47 -8.08 5.95 -925.13 -5.50 -13.59 16 9 C 0.04 0.58 7.38 86.20 0.64 1.22 16 10 C 0.06 1.32 1.16 -10.65 -0.01 1.31 16 11 C -0.01 -0.16 5.87 86.21 0.51 0.35 16 12 C 0.09 2.35 5.88 86.28 0.51 2.86 16 13 N -0.60 -21.59 2.84 -825.55 -2.34 -23.93 16 14 C 0.13 5.51 5.21 86.38 0.45 5.96 16 15 C 0.03 1.45 5.29 29.85 0.16 1.61 16 16 C -0.54 -31.46 9.11 25.60 0.23 -31.22 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C 0.47 18.20 7.57 87.65 0.66 18.86 16 25 O -0.59 -28.85 16.33 -3.03 -0.05 -28.89 16 26 C 0.06 1.86 6.65 71.06 0.47 2.34 16 27 O -0.34 -9.31 10.66 -148.98 -1.59 -10.90 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 1.18 7.16 -2.38 -0.02 1.16 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 0.70 7.69 -2.39 -0.02 0.68 16 37 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.13 0.78 7.75 -2.39 -0.02 0.77 16 39 H 0.10 1.56 7.55 -2.39 -0.02 1.54 16 40 H 0.08 1.95 6.97 -2.39 -0.02 1.93 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.12 2.13 7.77 -2.39 -0.02 2.11 16 43 H 0.05 2.57 7.28 -2.38 -0.02 2.55 16 44 H 0.10 3.45 7.96 -2.39 -0.02 3.43 16 45 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 46 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 47 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 49 H 0.10 2.65 7.15 -2.39 -0.02 2.63 16 Total: -1.00 -84.32 400.65 0.15 -84.17 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.93 Total: 11.14 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.57 Total: 12.62 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -7.56 Total: -95.33 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -1.82 Total: -59.35 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -84.32 0.15 -84.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274061932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.424 kcal (2) G-P(sol) polarization free energy of solvation -84.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds