Wall clock time and date at job start Sat Apr 11 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46775 * 2 1 4 4 C 1.52996 * 109.46772 * 240.00388 * 2 1 3 5 5 O 1.42900 * 109.47144 * 304.99491 * 4 2 1 6 6 C 1.42901 * 114.00039 * 180.02562 * 5 4 2 7 7 H 1.08998 * 110.75122 * 32.01433 * 6 5 4 8 8 C 1.55298 * 110.84880 * 155.71495 * 6 5 4 9 9 C 1.54950 * 100.94248 * 152.32229 * 8 6 5 10 10 O 1.43644 * 105.13661 * 323.55649 * 9 8 6 11 11 C 1.43236 * 109.97247 * 24.42627 * 10 9 8 12 12 N 1.46494 * 109.47349 * 120.00219 * 2 1 3 13 13 C 1.34779 * 119.99757 * 275.00168 * 12 2 1 14 14 O 1.21345 * 120.00263 * 359.97438 * 13 12 2 15 15 C 1.49457 * 119.99809 * 180.02562 * 13 12 2 16 16 O 1.21340 * 119.99864 * 5.08623 * 15 13 12 17 17 N 1.34773 * 119.99770 * 185.08971 * 15 13 12 18 18 C 1.46499 * 120.00072 * 185.00703 * 17 15 13 19 19 C 1.53000 * 109.47568 * 184.77088 * 18 17 15 20 20 C 1.50699 * 115.55169 * 294.82822 * 19 18 17 21 21 H 1.07996 * 120.00355 * 99.44295 * 20 19 18 22 22 C 1.37874 * 119.99684 * 279.43992 * 20 19 18 23 23 N 1.31523 * 120.00135 * 5.14854 * 22 20 19 24 24 Si 1.86801 * 120.00109 * 185.14981 * 22 20 19 25 25 H 1.48502 * 109.47011 * 270.00159 * 24 22 20 26 26 H 1.48502 * 109.47012 * 29.99917 * 24 22 20 27 27 H 1.48495 * 109.47305 * 149.99978 * 24 22 20 28 28 C 1.53007 * 117.51310 * 80.52608 * 19 18 17 29 29 C 1.53002 * 59.99998 * 107.48119 * 28 19 18 30 30 H 1.08994 * 109.47283 * 59.99757 * 1 2 3 31 31 H 1.09000 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46986 * 299.99655 * 1 2 3 33 33 H 1.09003 * 109.47473 * 64.99887 * 4 2 1 34 34 H 1.09008 * 109.46752 * 184.99877 * 4 2 1 35 35 H 1.08996 * 111.12449 * 270.23814 * 8 6 5 36 36 H 1.09003 * 111.12715 * 34.40325 * 8 6 5 37 37 H 1.09000 * 110.31079 * 204.63984 * 9 8 6 38 38 H 1.08999 * 110.31004 * 82.46759 * 9 8 6 39 39 H 1.09007 * 109.83580 * 238.77938 * 11 10 9 40 40 H 1.09003 * 109.83426 * 117.80338 * 11 10 9 41 41 H 0.96995 * 120.00128 * 94.99650 * 12 2 1 42 42 H 0.97002 * 120.00399 * 5.00826 * 17 15 13 43 43 H 1.09007 * 109.46807 * 64.77149 * 18 17 15 44 44 H 1.08994 * 109.47371 * 304.77867 * 18 17 15 45 45 H 0.97000 * 119.99622 * 174.99957 * 23 22 20 46 46 H 1.09002 * 117.49349 * 214.97184 * 28 19 18 47 47 H 1.09000 * 117.49979 * 359.97438 * 28 19 18 48 48 H 1.08996 * 117.49484 * 252.50633 * 29 28 19 49 49 H 1.09002 * 117.49449 * 107.48670 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 6 1.8844 -2.7928 -2.4448 7 1 2.9023 -2.5321 -2.7347 8 6 1.7574 -4.3150 -2.1645 9 6 1.5315 -4.8601 -3.5973 10 8 0.7246 -3.8688 -4.2528 11 6 0.9093 -2.5945 -3.6253 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1592 2.4115 15 6 2.6459 -0.7227 3.5772 16 8 3.0221 -1.8738 3.5019 17 7 2.6777 -0.0793 4.7610 18 6 3.2676 -0.7307 5.9331 19 6 3.0710 0.1575 7.1633 20 6 3.7936 1.4796 7.1326 21 1 3.2621 2.3793 6.8599 22 6 5.1332 1.5405 7.4527 23 7 5.8046 0.4339 7.6861 24 14 5.9948 3.1948 7.5551 25 1 6.5516 3.5462 6.2240 26 1 5.0213 4.2348 7.9746 27 1 7.0964 3.1186 8.5480 28 6 1.7076 0.1134 7.8563 29 6 2.9240 -0.5361 8.5192 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7516 -0.1582 -2.1370 34 1 3.1263 -0.7994 -1.2056 35 1 2.6759 -4.7129 -1.7332 36 1 0.9010 -4.5265 -1.5242 37 1 1.0042 -5.8133 -3.5606 38 1 2.4847 -4.9737 -4.1135 39 1 -0.0465 -2.2218 -3.2567 40 1 1.3323 -1.8883 -4.3397 41 1 2.2491 -1.6317 1.1525 42 1 2.3101 0.8151 4.8370 43 1 4.3331 -0.8868 5.7642 44 1 2.7812 -1.6922 6.0977 45 1 6.7617 0.4706 7.8397 46 1 1.3333 1.0408 8.2900 47 1 0.9503 -0.5481 7.4356 48 1 2.9670 -1.6251 8.5348 49 1 3.3499 -0.0360 9.3890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323630265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:46 Heat of formation + Delta-G solvation = -140.234594 kcal Electronic energy + Delta-G solvation = -29637.640286 eV Core-core repulsion = 25372.763904 eV Total energy + Delta-G solvation = -4264.876382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43464 -40.01312 -38.51364 -37.71563 -36.72228 -35.45790 -33.38139 -32.02160 -31.95003 -30.92044 -29.19641 -27.05810 -26.80429 -25.47648 -23.78404 -22.94325 -22.00161 -21.28837 -20.97725 -19.96495 -19.52770 -18.09007 -17.87825 -17.11221 -16.65744 -16.16679 -15.98355 -15.73656 -15.47072 -15.10188 -14.83738 -14.79847 -14.67739 -14.21025 -14.03698 -13.66859 -13.58880 -13.32659 -13.03645 -12.77407 -12.70280 -12.59034 -12.27860 -11.93607 -11.83685 -11.69532 -11.65188 -11.29959 -11.25740 -11.16155 -11.00398 -10.96864 -10.53435 -10.30150 -10.10816 -9.97305 -9.70337 -9.27040 -9.19910 -9.01834 -8.56132 -8.39619 -8.18263 -6.11017 -4.19490 1.80574 2.66830 2.95870 3.25976 3.33347 3.36455 3.49002 3.62956 3.92970 4.05960 4.34595 4.35253 4.39639 4.49122 4.65394 4.70461 4.80847 4.90631 4.93835 5.10320 5.17125 5.18598 5.22906 5.26961 5.29762 5.31857 5.43543 5.51972 5.56188 5.75328 5.95202 6.09656 6.27052 6.29624 6.40114 6.47170 6.47783 6.65653 6.66436 6.76383 7.02064 7.03538 7.26555 7.35223 7.41686 7.80118 7.88476 8.17671 8.30095 8.55626 8.82427 9.48032 10.96924 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002067 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.005581 B =13544.730012 C =13819.409934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.105 0.895 4 C 0.050 3.950 5 O -0.364 6.364 6 C 0.056 3.944 7 H 0.080 0.920 8 C -0.154 4.154 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.028 3.972 12 N -0.700 5.700 13 C 0.509 3.491 14 O -0.520 6.520 15 C 0.495 3.505 16 O -0.541 6.541 17 N -0.665 5.665 18 C 0.159 3.841 19 C 0.026 3.974 20 C -0.501 4.501 21 H 0.062 0.938 22 C 0.074 3.926 23 N -0.876 5.876 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.272 1.272 27 H -0.286 1.286 28 C -0.208 4.208 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.413 0.587 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.262 0.738 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -6.568 -21.174 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.123 0.877 4 C -0.027 4.027 5 O -0.283 6.283 6 C -0.002 4.002 7 H 0.098 0.902 8 C -0.191 4.191 9 C -0.025 4.025 10 O -0.300 6.300 11 C -0.049 4.049 12 N -0.355 5.355 13 C 0.291 3.709 14 O -0.395 6.395 15 C 0.274 3.726 16 O -0.420 6.420 17 N -0.315 5.315 18 C 0.037 3.963 19 C 0.025 3.975 20 C -0.538 4.538 21 H 0.080 0.920 22 C -0.131 4.131 23 N -0.512 5.512 24 Si 0.719 3.281 25 H -0.206 1.206 26 H -0.197 1.197 27 H -0.212 1.212 28 C -0.245 4.245 29 C -0.188 4.188 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.249 0.751 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.888 -6.682 -21.068 23.468 hybrid contribution 0.947 0.995 0.076 1.376 sum -6.942 -5.687 -20.992 22.829 Atomic orbital electron populations 1.22098 0.94150 1.03142 1.02526 1.21099 0.95512 0.96830 0.82451 0.87749 1.22957 0.97854 0.84064 0.97823 1.87974 1.69921 1.26302 1.44090 1.23684 0.97658 0.92311 0.86573 0.90183 1.23328 1.04677 0.93017 0.98086 1.23366 0.95570 0.92744 0.90861 1.88437 1.67040 1.17716 1.56808 1.23671 1.00457 0.86411 0.94357 1.45777 1.65983 1.15147 1.08596 1.20532 0.78389 0.87058 0.84954 1.90747 1.48304 1.15467 1.84978 1.19910 0.81144 0.86787 0.84760 1.90709 1.48953 1.16686 1.85633 1.45880 1.57006 1.20379 1.08225 1.21184 0.98283 0.93466 0.83411 1.19025 0.93490 0.96133 0.88814 1.20388 0.94436 0.91413 1.47568 0.91963 1.24991 0.97533 0.96391 0.94142 1.69966 1.07819 1.26558 1.46877 0.86602 0.79341 0.84262 0.77925 1.20609 1.19726 1.21174 1.23000 0.91842 1.01736 1.07970 1.22541 1.00620 0.96985 0.98685 0.91670 0.91303 0.91782 0.91325 0.91942 0.88970 0.88917 0.89117 0.91843 0.90051 0.91220 0.74793 0.75083 0.90146 0.93636 0.92819 0.90182 0.91505 0.91547 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.29 37.16 0.35 -1.19 16 2 C 0.15 1.44 2.98 -67.93 -0.20 1.24 16 3 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 4 C 0.05 0.37 5.55 37.16 0.21 0.58 16 5 O -0.36 -3.03 8.93 -35.23 -0.31 -3.34 16 6 C 0.06 0.39 3.45 -24.78 -0.09 0.30 16 7 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 8 C -0.15 -1.00 6.89 -24.48 -0.17 -1.16 16 9 C 0.05 0.32 7.78 38.19 0.30 0.62 16 10 O -0.38 -3.43 11.36 -35.23 -0.40 -3.83 16 11 C 0.03 0.20 7.58 37.89 0.29 0.49 16 12 N -0.70 -8.87 5.05 -54.24 -0.27 -9.15 16 13 C 0.51 8.30 7.85 -11.58 -0.09 8.21 16 14 O -0.52 -9.37 16.16 5.50 0.09 -9.28 16 15 C 0.49 9.36 7.88 -11.58 -0.09 9.27 16 16 O -0.54 -11.09 16.47 5.51 0.09 -11.00 16 17 N -0.67 -13.43 5.46 -60.73 -0.33 -13.77 16 18 C 0.16 3.56 5.53 -4.04 -0.02 3.54 16 19 C 0.03 0.61 1.32 -155.65 -0.21 0.41 16 20 C -0.50 -12.91 8.57 -34.44 -0.30 -13.20 16 21 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 22 C 0.07 1.94 5.42 -17.82 -0.10 1.85 16 23 N -0.88 -24.02 13.09 55.43 0.73 -23.29 16 24 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 C -0.21 -4.30 9.96 -26.73 -0.27 -4.57 16 29 C -0.15 -3.36 9.66 -26.73 -0.26 -3.62 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 32 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.44 8.11 -51.92 -0.42 0.02 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.62 8.05 -51.92 -0.42 0.20 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.42 5.11 7.86 -40.82 -0.32 4.79 16 42 H 0.41 8.23 7.84 -40.82 -0.32 7.92 16 43 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 44 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 45 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 46 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 412.00 15.07 6.21 6.21 Total: -1.00 -30.12 412.00 -8.01 -38.13 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.14 Total: 10.91 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.65 Total: 2.76 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.12 Total: -46.21 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.54 Total: -27.45 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.12 -8.01 -38.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323630265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.100 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds