Wall clock time and date at job start Sat Apr 11 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46775 * 2 1 4 4 C 1.52996 * 109.46772 * 240.00388 * 2 1 3 5 5 O 1.42900 * 109.47144 * 304.99491 * 4 2 1 6 6 C 1.42901 * 114.00039 * 180.02562 * 5 4 2 7 7 H 1.08998 * 110.75122 * 32.01433 * 6 5 4 8 8 C 1.55298 * 110.84880 * 155.71495 * 6 5 4 9 9 C 1.54950 * 100.94248 * 152.32229 * 8 6 5 10 10 O 1.43644 * 105.13661 * 323.55649 * 9 8 6 11 11 C 1.43236 * 109.97247 * 24.42627 * 10 9 8 12 12 N 1.46494 * 109.47349 * 120.00219 * 2 1 3 13 13 C 1.34779 * 119.99757 * 275.00168 * 12 2 1 14 14 O 1.21345 * 120.00263 * 359.97438 * 13 12 2 15 15 C 1.49457 * 119.99809 * 180.02562 * 13 12 2 16 16 O 1.21340 * 119.99864 * 5.08623 * 15 13 12 17 17 N 1.34773 * 119.99770 * 185.08971 * 15 13 12 18 18 C 1.46499 * 120.00072 * 185.00703 * 17 15 13 19 19 C 1.53000 * 109.47568 * 184.77088 * 18 17 15 20 20 C 1.50699 * 115.55169 * 294.82822 * 19 18 17 21 21 H 1.07996 * 120.00355 * 99.44295 * 20 19 18 22 22 C 1.37874 * 119.99684 * 279.43992 * 20 19 18 23 23 N 1.31523 * 120.00135 * 5.14854 * 22 20 19 24 24 Si 1.86801 * 120.00109 * 185.14981 * 22 20 19 25 25 H 1.48502 * 109.47011 * 270.00159 * 24 22 20 26 26 H 1.48502 * 109.47012 * 29.99917 * 24 22 20 27 27 H 1.48495 * 109.47305 * 149.99978 * 24 22 20 28 28 C 1.53007 * 117.51310 * 80.52608 * 19 18 17 29 29 C 1.53002 * 59.99998 * 107.48119 * 28 19 18 30 30 H 1.08994 * 109.47283 * 59.99757 * 1 2 3 31 31 H 1.09000 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46986 * 299.99655 * 1 2 3 33 33 H 1.09003 * 109.47473 * 64.99887 * 4 2 1 34 34 H 1.09008 * 109.46752 * 184.99877 * 4 2 1 35 35 H 1.08996 * 111.12449 * 270.23814 * 8 6 5 36 36 H 1.09003 * 111.12715 * 34.40325 * 8 6 5 37 37 H 1.09000 * 110.31079 * 204.63984 * 9 8 6 38 38 H 1.08999 * 110.31004 * 82.46759 * 9 8 6 39 39 H 1.09007 * 109.83580 * 238.77938 * 11 10 9 40 40 H 1.09003 * 109.83426 * 117.80338 * 11 10 9 41 41 H 0.96995 * 120.00128 * 94.99650 * 12 2 1 42 42 H 0.97002 * 120.00399 * 5.00826 * 17 15 13 43 43 H 1.09007 * 109.46807 * 64.77149 * 18 17 15 44 44 H 1.08994 * 109.47371 * 304.77867 * 18 17 15 45 45 H 0.97000 * 119.99622 * 174.99957 * 23 22 20 46 46 H 1.09002 * 117.49349 * 214.97184 * 28 19 18 47 47 H 1.09000 * 117.49979 * 359.97438 * 28 19 18 48 48 H 1.08996 * 117.49484 * 252.50633 * 29 28 19 49 49 H 1.09002 * 117.49449 * 107.48670 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 6 1.8844 -2.7928 -2.4448 7 1 2.9023 -2.5321 -2.7347 8 6 1.7574 -4.3150 -2.1645 9 6 1.5315 -4.8601 -3.5973 10 8 0.7246 -3.8688 -4.2528 11 6 0.9093 -2.5945 -3.6253 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1592 2.4115 15 6 2.6459 -0.7227 3.5772 16 8 3.0221 -1.8738 3.5019 17 7 2.6777 -0.0793 4.7610 18 6 3.2676 -0.7307 5.9331 19 6 3.0710 0.1575 7.1633 20 6 3.7936 1.4796 7.1326 21 1 3.2621 2.3793 6.8599 22 6 5.1332 1.5405 7.4527 23 7 5.8046 0.4339 7.6861 24 14 5.9948 3.1948 7.5551 25 1 6.5516 3.5462 6.2240 26 1 5.0213 4.2348 7.9746 27 1 7.0964 3.1186 8.5480 28 6 1.7076 0.1134 7.8563 29 6 2.9240 -0.5361 8.5192 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7516 -0.1582 -2.1370 34 1 3.1263 -0.7994 -1.2056 35 1 2.6759 -4.7129 -1.7332 36 1 0.9010 -4.5265 -1.5242 37 1 1.0042 -5.8133 -3.5606 38 1 2.4847 -4.9737 -4.1135 39 1 -0.0465 -2.2218 -3.2567 40 1 1.3323 -1.8883 -4.3397 41 1 2.2491 -1.6317 1.1525 42 1 2.3101 0.8151 4.8370 43 1 4.3331 -0.8868 5.7642 44 1 2.7812 -1.6922 6.0977 45 1 6.7617 0.4706 7.8397 46 1 1.3333 1.0408 8.2900 47 1 0.9503 -0.5481 7.4356 48 1 2.9670 -1.6251 8.5348 49 1 3.3499 -0.0360 9.3890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323630265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:45 Heat of formation + Delta-G solvation = -161.709062 kcal Electronic energy + Delta-G solvation = -29638.571488 eV Core-core repulsion = 25372.763904 eV Total energy + Delta-G solvation = -4265.807584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70714 -40.66837 -39.82241 -38.57762 -38.44562 -36.45104 -34.97948 -34.00415 -32.68544 -31.72874 -29.72105 -28.70218 -27.53537 -27.38320 -25.13242 -23.49984 -22.97215 -22.53076 -21.95737 -21.40493 -21.21153 -19.56414 -18.54269 -18.04819 -17.77743 -17.64637 -17.02563 -16.81316 -16.60451 -16.42832 -16.28432 -15.80792 -15.60224 -15.56047 -15.12441 -14.91117 -14.83674 -14.41695 -14.20118 -13.88457 -13.62899 -13.52284 -13.37461 -13.29237 -12.98371 -12.94418 -12.85175 -12.68361 -12.44837 -12.36211 -12.35167 -12.04683 -12.01478 -11.68703 -11.51324 -10.88801 -10.75885 -10.63183 -10.51067 -10.49013 -10.33707 -10.11876 -9.95522 -8.11693 -6.24315 0.39334 1.39145 1.41405 1.44244 1.52514 2.17693 2.39034 2.41910 2.73254 2.99363 3.16535 3.41140 3.45138 3.60022 3.71219 3.87914 3.99225 4.02475 4.17143 4.19686 4.27959 4.38182 4.44658 4.51510 4.53027 4.62859 4.68372 4.70305 4.73734 4.77545 4.81811 4.93571 4.94627 4.94775 5.00051 5.05736 5.24503 5.25591 5.35067 5.37721 5.53948 5.62587 5.77105 5.96050 6.01211 6.13103 6.35303 6.47768 6.78838 6.83374 7.02237 7.45264 8.95700 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.002067 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.005581 B =13544.730012 C =13819.409934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.104 0.896 4 C 0.054 3.946 5 O -0.379 6.379 6 C 0.056 3.944 7 H 0.097 0.903 8 C -0.154 4.154 9 C 0.048 3.952 10 O -0.406 6.406 11 C 0.027 3.973 12 N -0.682 5.682 13 C 0.516 3.484 14 O -0.539 6.539 15 C 0.494 3.506 16 O -0.558 6.558 17 N -0.669 5.669 18 C 0.175 3.825 19 C 0.001 3.999 20 C -0.507 4.507 21 H 0.058 0.942 22 C 0.028 3.972 23 N -0.904 5.904 24 Si 0.947 3.053 25 H -0.280 1.280 26 H -0.267 1.267 27 H -0.286 1.286 28 C -0.179 4.179 29 C -0.156 4.156 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.419 0.581 42 H 0.414 0.586 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.260 0.740 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -6.230 -22.817 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.122 0.878 4 C -0.022 4.022 5 O -0.298 6.298 6 C -0.002 4.002 7 H 0.114 0.886 8 C -0.191 4.191 9 C -0.027 4.027 10 O -0.326 6.326 11 C -0.050 4.050 12 N -0.336 5.336 13 C 0.296 3.704 14 O -0.417 6.417 15 C 0.274 3.726 16 O -0.438 6.438 17 N -0.318 5.318 18 C 0.051 3.949 19 C 0.000 4.000 20 C -0.544 4.544 21 H 0.077 0.923 22 C -0.173 4.173 23 N -0.542 5.542 24 Si 0.773 3.227 25 H -0.206 1.206 26 H -0.192 1.192 27 H -0.212 1.212 28 C -0.216 4.216 29 C -0.194 4.194 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.256 0.744 42 H 0.251 0.749 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.465 -6.354 -22.746 25.088 hybrid contribution 1.072 0.830 0.525 1.454 sum -7.393 -5.524 -22.221 24.062 Atomic orbital electron populations 1.22042 0.93675 1.02887 1.02695 1.21378 0.95854 0.96988 0.82133 0.87829 1.22958 0.98111 0.83962 0.97205 1.87952 1.70309 1.26744 1.44836 1.23773 0.98318 0.92158 0.85961 0.88557 1.23331 1.04624 0.93125 0.98044 1.23505 0.96041 0.92519 0.90670 1.88403 1.67879 1.18728 1.57588 1.23727 1.00358 0.86106 0.94797 1.45819 1.64280 1.15197 1.08306 1.19982 0.78764 0.86666 0.84989 1.90744 1.49696 1.16030 1.85181 1.20410 0.80331 0.86586 0.85252 1.90692 1.49534 1.17529 1.86008 1.45796 1.57280 1.20447 1.08301 1.20794 0.96338 0.93750 0.83995 1.19067 0.95683 0.95724 0.89526 1.20647 0.94704 0.92358 1.46728 0.92335 1.25648 0.98366 0.99057 0.94238 1.70071 1.07813 1.28129 1.48160 0.85725 0.78315 0.81004 0.77639 1.20611 1.19157 1.21202 1.22993 0.91049 1.01904 1.05697 1.22492 1.01912 0.97479 0.97532 0.89259 0.91712 0.93845 0.88625 0.91234 0.87987 0.90157 0.88466 0.90472 0.90770 0.89836 0.74423 0.74926 0.93678 0.93070 0.93069 0.89716 0.89221 0.90518 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.29 71.98 0.67 -2.02 16 2 C 0.14 2.50 2.98 44.99 0.13 2.63 16 3 H 0.10 1.95 7.58 -2.39 -0.02 1.93 16 4 C 0.05 0.65 5.55 71.98 0.40 1.05 16 5 O -0.38 -5.49 8.93 -148.98 -1.33 -6.82 16 6 C 0.06 0.65 3.45 31.85 0.11 0.76 16 7 H 0.10 0.81 7.89 -2.39 -0.02 0.79 16 8 C -0.15 -1.77 6.89 32.05 0.22 -1.55 16 9 C 0.05 0.55 7.78 72.65 0.56 1.11 16 10 O -0.41 -6.80 11.36 -148.98 -1.69 -8.49 16 11 C 0.03 0.34 7.58 72.45 0.55 0.89 16 12 N -0.68 -16.45 5.05 -443.87 -2.24 -18.69 16 13 C 0.52 16.46 7.85 87.27 0.69 17.15 16 14 O -0.54 -19.10 16.16 -3.23 -0.05 -19.15 16 15 C 0.49 18.59 7.88 87.27 0.69 19.28 16 16 O -0.56 -22.78 16.47 -3.22 -0.05 -22.83 16 17 N -0.67 -27.01 5.46 -464.42 -2.54 -29.55 16 18 C 0.17 7.88 5.53 86.38 0.48 8.36 16 19 C 0.00 0.03 1.32 -52.92 -0.07 -0.04 16 20 C -0.51 -26.18 8.57 25.60 0.22 -25.96 16 21 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 22 C 0.03 1.48 5.42 84.65 0.46 1.94 16 23 N -0.90 -50.36 13.09 21.45 0.28 -50.08 16 24 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 28 C -0.18 -7.14 9.96 30.60 0.30 -6.84 16 29 C -0.16 -6.92 9.66 30.60 0.30 -6.63 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.18 7.56 -2.39 -0.02 1.17 16 32 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.77 8.11 -2.38 -0.02 0.75 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 1.02 8.05 -2.38 -0.02 1.00 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.42 9.76 7.86 -92.71 -0.73 9.03 16 42 H 0.41 16.50 7.84 -92.71 -0.73 15.77 16 43 H 0.04 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.05 2.22 8.05 -2.39 -0.02 2.20 16 45 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 46 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 48 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -64.42 412.00 -0.39 -64.80 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.49 Total: 36.08 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.71 Total: 10.14 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.50 Total: -98.32 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -3.13 Total: -57.29 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.42 -0.39 -64.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323630265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.907 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds