Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47310 * 2 1 4 4 C 1.53002 * 109.46985 * 119.99833 * 2 1 3 5 5 O 1.42899 * 109.46879 * 55.00237 * 4 2 1 6 6 C 1.42908 * 113.99910 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.75179 * 327.98246 * 6 5 4 8 8 C 1.55564 * 111.01126 * 204.40337 * 6 5 4 9 9 C 1.54948 * 100.82350 * 207.60696 * 8 6 5 10 10 O 1.43648 * 105.22336 * 36.44614 * 9 8 6 11 11 C 1.43239 * 109.96854 * 335.51935 * 10 9 8 12 12 N 1.46495 * 109.47354 * 239.99941 * 2 1 3 13 13 C 1.34773 * 120.00291 * 85.00192 * 12 2 1 14 14 O 1.21349 * 119.99817 * 359.97438 * 13 12 2 15 15 C 1.49453 * 120.00469 * 179.97438 * 13 12 2 16 16 O 1.21351 * 119.99635 * 354.95633 * 15 13 12 17 17 N 1.34777 * 120.00063 * 174.94516 * 15 13 12 18 18 C 1.46506 * 119.99799 * 185.06931 * 17 15 13 19 19 C 1.52995 * 109.46716 * 185.01010 * 18 17 15 20 20 C 1.50700 * 115.55085 * 269.60235 * 19 18 17 21 21 H 1.07999 * 119.99733 * 95.24733 * 20 19 18 22 22 C 1.37878 * 120.00122 * 275.24953 * 20 19 18 23 23 N 1.31516 * 120.00027 * 5.14663 * 22 20 19 24 24 Si 1.86796 * 119.99936 * 185.14633 * 22 20 19 25 25 H 1.48495 * 109.47328 * 60.00322 * 24 22 20 26 26 H 1.48503 * 109.46810 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47257 * 299.99933 * 24 22 20 28 28 C 1.53004 * 117.49746 * 123.89576 * 19 18 17 29 29 C 1.52998 * 60.00220 * 252.50615 * 28 19 18 30 30 H 1.08999 * 109.47343 * 300.00274 * 1 2 3 31 31 H 1.09001 * 109.46710 * 59.99821 * 1 2 3 32 32 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47416 * 295.00086 * 4 2 1 34 34 H 1.09000 * 109.47408 * 174.99886 * 4 2 1 35 35 H 1.09002 * 111.22125 * 89.70815 * 8 6 5 36 36 H 1.08993 * 111.13830 * 325.47034 * 8 6 5 37 37 H 1.08998 * 110.30992 * 277.48079 * 9 8 6 38 38 H 1.09004 * 110.30697 * 155.41234 * 9 8 6 39 39 H 1.09003 * 109.82845 * 121.22578 * 11 10 9 40 40 H 1.09000 * 109.82659 * 242.10749 * 11 10 9 41 41 H 0.97003 * 120.00437 * 265.00129 * 12 2 1 42 42 H 0.96994 * 119.99941 * 5.07026 * 17 15 13 43 43 H 1.09004 * 109.46528 * 305.01055 * 18 17 15 44 44 H 1.08993 * 109.47202 * 65.00599 * 18 17 15 45 45 H 0.96996 * 120.00506 * 184.99727 * 23 22 20 46 46 H 1.09001 * 117.49905 * 0.02562 * 28 19 18 47 47 H 1.09008 * 117.49913 * 145.01625 * 28 19 18 48 48 H 1.08997 * 117.50193 * 252.50900 * 29 28 19 49 49 H 1.08999 * 117.49265 * 107.48733 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0303 1.3094 6 6 1.8844 -2.7930 2.4448 7 1 2.9024 -2.5323 2.7346 8 6 1.7615 -4.3186 2.1669 9 6 1.5375 -4.8586 3.6019 10 8 0.7283 -3.8680 4.2557 11 6 0.9094 -2.5947 3.6252 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8581 1.1590 -2.4117 15 6 2.6459 -0.7227 -3.5772 16 8 3.0214 -1.8742 -3.5021 17 7 2.6785 -0.0790 -4.7609 18 6 3.0616 -0.8008 -5.9769 19 6 3.1387 0.1795 -7.1489 20 6 1.8627 0.3605 -7.9300 21 1 1.1970 1.1778 -7.6949 22 6 1.5451 -0.5173 -8.9447 23 7 2.3025 -1.5697 -9.1649 24 14 0.0390 -0.2119 -10.0066 25 1 0.1755 1.0971 -10.6944 26 1 -0.0810 -1.2928 -11.0179 27 1 -1.1750 -0.1976 -9.1516 28 6 4.4572 0.2546 -7.9215 29 6 4.0495 1.3989 -6.9914 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1370 34 1 3.1263 -0.7995 1.2057 35 1 2.6804 -4.7166 1.7364 36 1 0.9051 -4.5340 1.5280 37 1 2.4913 -4.9686 4.1179 38 1 1.0135 -5.8138 3.5692 39 1 -0.0476 -2.2253 3.2563 40 1 1.3293 -1.8854 4.3384 41 1 2.2491 -1.6318 -1.1526 42 1 2.4484 0.8621 -4.8077 43 1 4.0349 -1.2690 -5.8300 44 1 2.3183 -1.5682 -6.1933 45 1 2.1218 -2.1473 -9.9228 46 1 5.2695 -0.3948 -7.5951 47 1 4.4018 0.4347 -8.9952 48 1 3.7259 2.3318 -7.4529 49 1 4.5937 1.5025 -6.0527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323630266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = -139.625340 kcal Electronic energy + Delta-G solvation = -29551.438529 eV Core-core repulsion = 25286.588566 eV Total energy + Delta-G solvation = -4264.849962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.48406 -40.02998 -38.57161 -37.75391 -36.77013 -35.49347 -33.41424 -31.99049 -31.94427 -30.94924 -29.20654 -27.12482 -26.83396 -25.49327 -23.81153 -22.95053 -22.01904 -21.38177 -20.98504 -20.00145 -19.46282 -18.20293 -17.89714 -17.12691 -16.68252 -16.16446 -16.01588 -15.75393 -15.53664 -15.11307 -14.89217 -14.84484 -14.63958 -14.24944 -14.00510 -13.78488 -13.65193 -13.33026 -13.10578 -12.78140 -12.69554 -12.56435 -12.29863 -11.94534 -11.85176 -11.72534 -11.58007 -11.34195 -11.29502 -11.17088 -11.04499 -10.91842 -10.56225 -10.30373 -10.12535 -9.98247 -9.71269 -9.33692 -9.27217 -9.02474 -8.51519 -8.38624 -8.25878 -6.10518 -4.18757 1.74028 2.60557 2.93900 3.28311 3.33654 3.36037 3.48143 3.56594 3.90850 3.99833 4.32948 4.35844 4.38072 4.47097 4.63129 4.68667 4.78659 4.85993 4.89002 5.07801 5.15425 5.18504 5.22043 5.25422 5.28755 5.29143 5.42499 5.50350 5.55794 5.74230 5.94637 6.09511 6.25513 6.29448 6.35194 6.46563 6.51510 6.62955 6.64490 6.71676 6.96321 7.04038 7.22003 7.37261 7.44196 7.79786 7.81774 8.09280 8.31344 8.47171 8.83770 9.48675 10.98039 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.002017 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.373366 B =13879.967270 C =14112.084583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.105 0.895 4 C 0.050 3.950 5 O -0.364 6.364 6 C 0.056 3.944 7 H 0.080 0.920 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.380 6.380 11 C 0.028 3.972 12 N -0.699 5.699 13 C 0.510 3.490 14 O -0.522 6.522 15 C 0.495 3.505 16 O -0.536 6.536 17 N -0.675 5.675 18 C 0.159 3.841 19 C 0.026 3.974 20 C -0.500 4.500 21 H 0.061 0.939 22 C 0.072 3.928 23 N -0.876 5.876 24 Si 0.891 3.109 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.145 4.145 29 C -0.209 4.209 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.416 0.584 42 H 0.410 0.590 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.263 0.737 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -1.658 24.664 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.122 0.878 4 C -0.027 4.027 5 O -0.282 6.282 6 C -0.002 4.002 7 H 0.098 0.902 8 C -0.191 4.191 9 C -0.026 4.026 10 O -0.300 6.300 11 C -0.049 4.049 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.398 6.398 15 C 0.274 3.726 16 O -0.414 6.414 17 N -0.325 5.325 18 C 0.037 3.963 19 C 0.025 3.975 20 C -0.537 4.537 21 H 0.079 0.921 22 C -0.132 4.132 23 N -0.512 5.512 24 Si 0.719 3.281 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.184 4.184 29 C -0.246 4.246 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.246 0.754 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.500 -1.949 24.587 24.669 hybrid contribution -0.417 0.250 -0.685 0.840 sum 0.083 -1.699 23.902 23.962 Atomic orbital electron populations 1.22106 0.94070 1.03265 1.02582 1.21107 0.95612 0.96736 0.82406 0.87767 1.22951 0.97769 0.84133 0.97813 1.87982 1.69900 1.26253 1.44110 1.23728 0.97608 0.92340 0.86548 0.90229 1.23373 1.04710 0.92943 0.98065 1.23362 0.95533 0.92786 0.90879 1.88442 1.67000 1.17816 1.56711 1.23664 1.00495 0.86443 0.94291 1.45788 1.65832 1.15220 1.08555 1.20532 0.78505 0.87017 0.84857 1.90739 1.48623 1.15561 1.84855 1.19952 0.80952 0.86914 0.84768 1.90727 1.47935 1.17129 1.85651 1.46100 1.64600 1.15074 1.06715 1.21393 0.99189 0.94932 0.80798 1.19065 0.91747 0.92634 0.94085 1.20389 1.04025 1.12293 1.17030 0.92051 1.24987 0.96644 0.94219 0.97343 1.69996 1.39272 1.13528 1.28366 0.86675 0.83377 0.77839 0.80237 1.20201 1.21247 1.20128 1.22542 0.98486 0.99808 0.97515 1.22989 1.06884 0.94415 1.00333 0.91637 0.91717 0.91235 0.91308 0.92002 0.88955 0.88887 0.91863 0.89106 0.90048 0.91223 0.74735 0.75383 0.93127 0.90346 0.92769 0.91604 0.89705 0.90063 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.29 37.16 0.35 -1.21 16 2 C 0.15 1.39 2.98 -67.93 -0.20 1.19 16 3 H 0.10 1.01 7.58 -51.93 -0.39 0.61 16 4 C 0.05 0.35 5.55 37.16 0.21 0.56 16 5 O -0.36 -2.97 8.94 -35.23 -0.32 -3.29 16 6 C 0.06 0.38 3.45 -24.64 -0.08 0.29 16 7 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 8 C -0.15 -0.99 6.92 -24.34 -0.17 -1.16 16 9 C 0.05 0.32 7.77 38.19 0.30 0.62 16 10 O -0.38 -3.42 11.36 -35.23 -0.40 -3.82 16 11 C 0.03 0.20 7.58 37.88 0.29 0.49 16 12 N -0.70 -8.59 5.05 -54.24 -0.27 -8.86 16 13 C 0.51 8.00 7.85 -11.59 -0.09 7.91 16 14 O -0.52 -8.98 16.15 5.50 0.09 -8.90 16 15 C 0.49 9.10 7.88 -11.58 -0.09 9.01 16 16 O -0.54 -10.84 16.47 5.50 0.09 -10.75 16 17 N -0.67 -13.14 5.40 -60.73 -0.33 -13.47 16 18 C 0.16 3.55 5.71 -4.04 -0.02 3.53 16 19 C 0.03 0.60 1.46 -155.66 -0.23 0.37 16 20 C -0.50 -13.04 8.77 -34.44 -0.30 -13.34 16 21 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 22 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 23 N -0.88 -24.11 12.91 55.43 0.72 -23.40 16 24 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C -0.15 -3.27 9.38 -26.73 -0.25 -3.52 16 29 C -0.21 -4.29 9.50 -26.73 -0.25 -4.55 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.42 5.00 7.86 -40.82 -0.32 4.68 16 42 H 0.41 7.71 7.70 -40.82 -0.31 7.40 16 43 H 0.05 1.13 7.83 -51.93 -0.41 0.72 16 44 H 0.08 1.97 8.04 -51.93 -0.42 1.55 16 45 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 46 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 47 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 48 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -30.27 410.96 -8.01 -38.28 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.11 Total: 10.34 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.65 Total: 2.00 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.11 Total: -45.73 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.54 Total: -26.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.27 -8.01 -38.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323630266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.344 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds