Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.52995 * 109.47435 * 120.00111 * 2 1 3 5 5 O 1.42906 * 109.47024 * 55.00251 * 4 2 1 6 6 C 1.42894 * 113.99974 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.75505 * 32.01112 * 6 5 4 8 8 C 1.55302 * 110.84892 * 155.71417 * 6 5 4 9 9 C 1.54949 * 100.94264 * 152.32226 * 8 6 5 10 10 O 1.43646 * 105.13502 * 323.55347 * 9 8 6 11 11 C 1.43233 * 109.97190 * 24.42591 * 10 9 8 12 12 N 1.46504 * 109.47092 * 240.00148 * 2 1 3 13 13 C 1.34779 * 119.99771 * 85.00001 * 12 2 1 14 14 O 1.21345 * 120.00263 * 359.97438 * 13 12 2 15 15 C 1.49457 * 119.99809 * 180.02562 * 13 12 2 16 16 O 1.21340 * 119.99864 * 5.08623 * 15 13 12 17 17 N 1.34773 * 119.99770 * 185.08971 * 15 13 12 18 18 C 1.46499 * 120.00072 * 185.00703 * 17 15 13 19 19 C 1.53000 * 109.47568 * 184.77088 * 18 17 15 20 20 C 1.50699 * 115.55169 * 294.82822 * 19 18 17 21 21 H 1.07996 * 120.00355 * 99.44295 * 20 19 18 22 22 C 1.37874 * 119.99684 * 279.43992 * 20 19 18 23 23 N 1.31523 * 120.00135 * 5.14854 * 22 20 19 24 24 Si 1.86801 * 120.00109 * 185.14981 * 22 20 19 25 25 H 1.48502 * 109.47011 * 270.00159 * 24 22 20 26 26 H 1.48502 * 109.47012 * 29.99917 * 24 22 20 27 27 H 1.48495 * 109.47305 * 149.99978 * 24 22 20 28 28 C 1.53007 * 117.51310 * 80.52608 * 19 18 17 29 29 C 1.53002 * 59.99998 * 107.48119 * 28 19 18 30 30 H 1.08993 * 109.46899 * 299.99418 * 1 2 3 31 31 H 1.08997 * 109.46955 * 60.00170 * 1 2 3 32 32 H 1.08998 * 109.46518 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47300 * 175.00098 * 4 2 1 34 34 H 1.08997 * 109.46943 * 295.00110 * 4 2 1 35 35 H 1.09004 * 111.12556 * 270.23828 * 8 6 5 36 36 H 1.09003 * 111.12812 * 34.39829 * 8 6 5 37 37 H 1.09006 * 110.30890 * 204.64113 * 9 8 6 38 38 H 1.08996 * 110.30952 * 82.46907 * 9 8 6 39 39 H 1.08997 * 109.83898 * 238.77386 * 11 10 9 40 40 H 1.09008 * 109.83196 * 117.80042 * 11 10 9 41 41 H 0.96995 * 120.00114 * 264.99443 * 12 2 1 42 42 H 0.97002 * 120.00399 * 5.00826 * 17 15 13 43 43 H 1.09007 * 109.46807 * 64.77149 * 18 17 15 44 44 H 1.08994 * 109.47371 * 304.77867 * 18 17 15 45 45 H 0.97000 * 119.99622 * 174.99957 * 23 22 20 46 46 H 1.09002 * 117.49349 * 214.97184 * 28 19 18 47 47 H 1.09000 * 117.49979 * 359.97438 * 28 19 18 48 48 H 1.08996 * 117.49484 * 252.50633 * 29 28 19 49 49 H 1.09002 * 117.49449 * 107.48670 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4704 -2.0304 1.3093 6 6 1.8838 -2.7926 2.4451 7 1 2.0667 -2.1425 3.3007 8 6 0.8348 -3.8849 2.7894 9 6 1.7331 -4.9542 3.4605 10 8 2.9702 -4.9162 2.7313 11 6 3.1362 -3.6333 2.1163 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8580 1.1591 -2.4117 15 6 2.6447 -0.7228 -3.5776 16 8 2.8450 -1.9192 -3.5482 17 7 2.8710 -0.0293 -4.7109 18 6 3.2530 -0.7342 -5.9371 19 6 3.5641 0.2847 -7.0353 20 6 2.3979 1.1211 -7.4952 21 1 2.2709 2.1248 -7.1174 22 6 1.4932 0.6049 -8.3984 23 7 1.5891 -0.6497 -8.7813 24 14 0.1311 1.6874 -9.0784 25 1 -1.0639 1.5881 -8.2024 26 1 0.5955 3.0971 -9.1243 27 1 -0.2212 1.2374 -10.4490 28 6 4.9437 0.9461 -7.0156 29 6 4.6126 -0.1013 -8.0806 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1264 -0.7994 1.2055 34 1 1.7517 -0.1583 2.1369 35 1 0.0875 -3.5060 3.4866 36 1 0.3648 -4.2765 1.8872 37 1 1.2749 -5.9398 3.3769 38 1 1.9031 -4.7027 4.5073 39 1 3.2302 -3.7500 1.0367 40 1 4.0250 -3.1442 2.5152 41 1 2.2491 -1.6317 -1.1527 42 1 2.7811 0.9365 -4.7147 43 1 2.4321 -1.3754 -6.2583 44 1 4.1364 -1.3434 -5.7458 45 1 0.9114 -1.0334 -9.3597 46 1 5.0077 1.9862 -7.3354 47 1 5.6298 0.6557 -6.2200 48 1 5.0809 -1.0809 -7.9857 49 1 4.4588 0.2497 -9.1010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323630267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = -139.777095 kcal Electronic energy + Delta-G solvation = -29755.664760 eV Core-core repulsion = 25490.808217 eV Total energy + Delta-G solvation = -4264.856543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42686 -39.99147 -38.50025 -37.70632 -36.71101 -35.45007 -33.36747 -32.00849 -31.93419 -30.93987 -29.13166 -27.04571 -26.81752 -25.46296 -23.74863 -22.95131 -21.99799 -21.28592 -20.97262 -19.94760 -19.51668 -18.09199 -17.82374 -17.06699 -16.73884 -16.14657 -15.95715 -15.63667 -15.50065 -15.29481 -14.82816 -14.69471 -14.48226 -14.17599 -13.97049 -13.78653 -13.61701 -13.31643 -13.13297 -12.71780 -12.69499 -12.48969 -12.13198 -12.00074 -11.82422 -11.76031 -11.64262 -11.27798 -11.24903 -11.16668 -10.99073 -10.95592 -10.52291 -10.29315 -10.09221 -9.92922 -9.69213 -9.25970 -9.19245 -9.00687 -8.54852 -8.38370 -8.17018 -6.09611 -4.18181 1.81739 2.67286 2.96490 3.27414 3.34710 3.37562 3.52195 3.63887 3.94057 4.05704 4.33889 4.36204 4.41097 4.48848 4.65804 4.70708 4.80094 4.88881 4.94640 5.12165 5.19045 5.20134 5.24796 5.25526 5.31625 5.33010 5.46241 5.53180 5.55928 5.77796 5.96230 6.12733 6.27966 6.30594 6.41197 6.48860 6.51971 6.66208 6.66788 6.77775 7.03380 7.04534 7.27322 7.36462 7.42670 7.81458 7.89314 8.18796 8.31261 8.57141 8.83693 9.49394 10.98343 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002204 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.410449 B =12698.425971 C =13232.191061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.104 0.896 4 C 0.050 3.950 5 O -0.364 6.364 6 C 0.057 3.943 7 H 0.079 0.921 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.379 6.379 11 C 0.026 3.974 12 N -0.700 5.700 13 C 0.510 3.490 14 O -0.520 6.520 15 C 0.494 3.506 16 O -0.540 6.540 17 N -0.666 5.666 18 C 0.159 3.841 19 C 0.027 3.973 20 C -0.501 4.501 21 H 0.062 0.938 22 C 0.074 3.926 23 N -0.876 5.876 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.273 1.273 27 H -0.286 1.286 28 C -0.208 4.208 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.413 0.587 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.262 0.738 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -3.212 24.932 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.122 0.878 4 C -0.026 4.026 5 O -0.283 6.283 6 C -0.002 4.002 7 H 0.097 0.903 8 C -0.190 4.190 9 C -0.026 4.026 10 O -0.298 6.298 11 C -0.051 4.051 12 N -0.355 5.355 13 C 0.291 3.709 14 O -0.395 6.395 15 C 0.273 3.727 16 O -0.419 6.419 17 N -0.315 5.315 18 C 0.036 3.964 19 C 0.026 3.974 20 C -0.539 4.539 21 H 0.080 0.920 22 C -0.130 4.130 23 N -0.512 5.512 24 Si 0.719 3.281 25 H -0.206 1.206 26 H -0.197 1.197 27 H -0.212 1.212 28 C -0.246 4.246 29 C -0.188 4.188 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.249 0.751 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.053 -3.561 24.533 24.790 hybrid contribution -0.748 0.783 -0.221 1.105 sum -0.801 -2.777 24.312 24.483 Atomic orbital electron populations 1.22098 0.94145 1.03209 1.02523 1.21098 0.95582 0.96742 0.82435 0.87770 1.22953 0.97859 0.83949 0.97888 1.87989 1.69438 1.26286 1.44541 1.23678 0.94125 0.93295 0.89056 0.90288 1.23318 0.98059 0.95135 1.02515 1.23355 0.83984 0.99860 0.95354 1.88456 1.39826 1.32762 1.68747 1.23707 0.97636 0.84124 0.99649 1.45786 1.66032 1.15178 1.08534 1.20535 0.78635 0.86954 0.84783 1.90745 1.48605 1.15488 1.84676 1.19911 0.80604 0.87407 0.84730 1.90717 1.52215 1.14438 1.84489 1.45876 1.64473 1.12243 1.08915 1.21185 0.99303 0.94452 0.81410 1.19023 0.88290 0.95875 0.94229 1.20385 1.08617 0.99700 1.25150 0.91970 1.24990 0.97545 0.95072 0.95433 1.69965 1.33994 1.12347 1.34890 0.86604 0.82170 0.80952 0.78422 1.20584 1.19740 1.21171 1.22998 1.01568 0.97785 1.02207 1.22541 1.04175 0.96605 0.95521 0.91726 0.91720 0.91272 0.92102 0.91251 0.89260 0.88875 0.89141 0.91959 0.89742 0.91155 0.74799 0.75102 0.90136 0.93641 0.92804 0.90195 0.91523 0.91543 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.29 37.16 0.35 -1.27 16 2 C 0.15 1.44 2.98 -67.93 -0.20 1.24 16 3 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 4 C 0.05 0.36 5.55 37.16 0.21 0.57 16 5 O -0.36 -3.04 8.93 -35.23 -0.31 -3.36 16 6 C 0.06 0.39 3.45 -24.78 -0.09 0.30 16 7 H 0.08 0.40 7.89 -51.93 -0.41 -0.01 16 8 C -0.15 -0.94 6.89 -24.48 -0.17 -1.11 16 9 C 0.05 0.33 7.78 38.19 0.30 0.63 16 10 O -0.38 -3.71 11.36 -35.23 -0.40 -4.11 16 11 C 0.03 0.21 7.58 37.88 0.29 0.50 16 12 N -0.70 -8.95 5.05 -54.23 -0.27 -9.23 16 13 C 0.51 8.36 7.85 -11.58 -0.09 8.27 16 14 O -0.52 -9.39 16.16 5.50 0.09 -9.31 16 15 C 0.49 9.44 7.88 -11.58 -0.09 9.35 16 16 O -0.54 -11.22 16.47 5.51 0.09 -11.12 16 17 N -0.67 -13.52 5.46 -60.73 -0.33 -13.85 16 18 C 0.16 3.59 5.53 -4.04 -0.02 3.56 16 19 C 0.03 0.62 1.32 -155.65 -0.21 0.42 16 20 C -0.50 -12.99 8.57 -34.44 -0.30 -13.29 16 21 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 22 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 23 N -0.88 -24.20 13.09 55.43 0.73 -23.47 16 24 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 C -0.21 -4.31 9.96 -26.73 -0.27 -4.58 16 29 C -0.15 -3.38 9.66 -26.73 -0.26 -3.63 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 8.11 -51.93 -0.42 -0.07 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 40 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.42 5.20 7.86 -40.82 -0.32 4.88 16 42 H 0.41 8.26 7.84 -40.82 -0.32 7.94 16 43 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 44 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 45 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 46 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 49 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 412.01 15.07 6.21 6.21 Total: -1.00 -30.51 412.01 -8.01 -38.52 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.14 Total: 11.11 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.65 Total: 2.82 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.12 Total: -46.55 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.54 Total: -27.90 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.51 -8.01 -38.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323630267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.260 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds