Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 O 1.45206 * 109.47382 * 119.99736 * 2 1 3 5 5 C 1.34227 * 116.99728 * 89.99822 * 4 2 1 6 6 O 1.20825 * 120.00197 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99869 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47226 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47446 * 179.97438 * 8 7 5 10 10 N 1.46495 * 109.47432 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00042 * 179.97438 * 10 9 8 12 12 O 1.21345 * 120.00257 * 0.02562 * 11 10 9 13 13 C 1.49451 * 119.99567 * 180.02562 * 11 10 9 14 14 O 1.21346 * 120.00584 * 357.83566 * 13 11 10 15 15 N 1.34784 * 119.99515 * 178.10243 * 13 11 10 16 16 C 1.46503 * 119.99781 * 184.83279 * 15 13 11 17 17 C 1.52996 * 109.46751 * 184.39345 * 16 15 13 18 18 C 1.50705 * 115.54960 * 64.93463 * 17 16 15 19 19 H 1.07999 * 119.99669 * 266.85407 * 18 17 16 20 20 C 1.37881 * 120.00127 * 86.85696 * 18 17 16 21 21 N 1.31513 * 119.99865 * 180.89321 * 20 18 17 22 22 Si 1.86800 * 119.99819 * 0.89524 * 20 18 17 23 23 H 1.48503 * 109.47200 * 84.92681 * 22 20 18 24 24 H 1.48494 * 109.46883 * 204.92548 * 22 20 18 25 25 H 1.48493 * 109.47254 * 324.92945 * 22 20 18 26 26 C 1.52994 * 117.50240 * 279.26149 * 17 16 15 27 27 C 1.52998 * 117.50050 * 210.59810 * 17 16 15 28 28 H 1.08994 * 109.46963 * 59.99958 * 1 2 3 29 29 H 1.08998 * 109.46568 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46746 * 299.99865 * 1 2 3 31 31 H 1.08994 * 109.47348 * 240.00223 * 2 1 3 32 32 H 1.09001 * 109.47603 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47427 * 300.00274 * 3 2 1 34 34 H 1.09008 * 109.47397 * 60.00002 * 3 2 1 35 35 H 1.08996 * 109.47044 * 60.00067 * 7 5 4 36 36 H 1.09000 * 109.47332 * 299.99980 * 7 5 4 37 37 H 1.09004 * 109.47298 * 59.99566 * 8 7 5 38 38 H 1.08997 * 109.47240 * 300.00037 * 8 7 5 39 39 H 1.09004 * 109.47112 * 59.99592 * 9 8 7 40 40 H 1.09005 * 109.46800 * 300.00308 * 9 8 7 41 41 H 0.97002 * 119.99985 * 0.02562 * 10 9 8 42 42 H 0.97000 * 120.00097 * 4.84521 * 15 13 11 43 43 H 1.09000 * 109.47451 * 304.39333 * 16 15 13 44 44 H 1.09000 * 109.46963 * 64.39659 * 16 15 13 45 45 H 0.97001 * 119.99653 * 179.97438 * 21 20 18 46 46 H 1.09002 * 117.50039 * 0.02562 * 26 17 16 47 47 H 1.09003 * 117.50292 * 145.02075 * 26 17 16 48 48 H 1.08994 * 117.50652 * 214.98066 * 27 17 16 49 49 H 1.09005 * 117.49737 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2172 -2.0075 1.0852 6 8 1.9983 -2.5748 0.0411 7 6 2.7184 -2.7852 2.2747 8 6 2.8637 -4.2603 1.8951 9 6 3.3731 -5.0499 3.1025 10 7 3.5116 -6.4623 2.7393 11 6 3.9490 -7.3529 3.6514 12 8 4.2276 -6.9850 4.7737 13 6 4.0909 -8.7937 3.2806 14 8 3.7751 -9.1686 2.1705 15 7 4.5645 -9.6778 4.1810 16 6 4.8036 -11.0683 3.7864 17 6 5.2314 -11.8795 5.0110 18 6 4.1915 -12.0212 6.0925 19 1 4.1677 -11.3203 6.9139 20 6 3.2705 -13.0456 6.0334 21 7 2.3521 -13.1589 6.9679 22 14 3.3274 -14.2726 4.6261 23 1 4.2962 -15.3510 4.9484 24 1 1.9788 -14.8618 4.4282 25 1 3.7526 -13.5807 3.3829 26 6 6.6949 -11.7826 5.4465 27 6 6.1769 -13.0602 4.7812 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 2.0089 -2.6894 3.0965 36 1 3.6873 -2.3928 2.5834 37 1 3.5733 -4.3558 1.0733 38 1 1.8950 -4.6531 1.5861 39 1 2.6637 -4.9544 3.9246 40 1 4.3419 -4.6569 3.4111 41 1 3.2893 -6.7564 1.8421 42 1 4.7469 -9.3935 5.0902 43 1 3.8882 -11.4910 3.3723 44 1 5.5920 -11.1022 3.0345 45 1 1.7040 -13.8793 6.9261 46 1 7.3529 -11.1406 4.8609 47 1 6.9056 -11.8217 6.5153 48 1 6.0472 -13.9392 5.4124 49 1 6.4938 -13.2593 3.7574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324830322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = -147.957993 kcal Electronic energy + Delta-G solvation = -28478.626920 eV Core-core repulsion = 24213.415627 eV Total energy + Delta-G solvation = -4265.211293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00602 -40.32399 -38.42412 -37.50226 -37.06541 -35.96997 -33.86984 -33.58610 -32.78060 -32.14031 -28.30532 -27.82575 -27.13268 -25.52157 -24.04272 -22.57923 -21.83195 -21.72936 -20.89325 -19.92553 -19.39989 -18.34997 -17.94168 -17.04159 -16.89683 -16.45714 -16.28625 -16.01701 -15.32437 -15.26631 -15.00527 -14.84114 -14.53981 -14.22334 -13.95459 -13.80004 -13.58437 -13.13605 -12.92275 -12.86439 -12.80034 -12.68529 -12.60069 -12.46743 -12.23149 -12.09883 -11.94508 -11.44432 -11.40326 -11.39057 -11.18324 -11.05329 -10.81923 -10.81189 -10.51090 -10.23848 -9.73712 -9.34840 -9.30454 -9.23354 -8.71723 -8.59815 -8.47618 -6.16115 -4.21382 1.70674 1.80421 2.13823 2.63922 3.27472 3.37598 3.40525 3.52162 3.89830 4.11446 4.25470 4.36746 4.38169 4.45401 4.47808 4.60666 4.66190 4.78066 4.98755 4.99773 5.02063 5.03498 5.11463 5.17947 5.21661 5.29022 5.33426 5.50568 5.60946 5.61348 5.63529 5.74298 5.96358 6.01334 6.07833 6.10753 6.17027 6.36697 6.39906 6.66247 6.80359 6.94314 7.04473 7.14831 7.34723 7.64654 7.74283 8.04166 8.38967 8.42877 8.85283 9.46000 10.95173 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.001606 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.684713 B =17425.507903 C =17652.756694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.355 6.355 5 C 0.462 3.538 6 O -0.506 6.506 7 C -0.110 4.110 8 C -0.124 4.124 9 C 0.118 3.882 10 N -0.707 5.707 11 C 0.510 3.490 12 O -0.516 6.516 13 C 0.498 3.502 14 O -0.539 6.539 15 N -0.665 5.665 16 C 0.151 3.849 17 C -0.020 4.020 18 C -0.492 4.492 19 H 0.080 0.920 20 C 0.080 3.920 21 N -0.893 5.893 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.260 1.260 26 C -0.177 4.177 27 C -0.192 4.192 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.414 0.586 42 H 0.417 0.583 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.266 0.734 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 26.195 -12.600 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.272 6.272 5 C 0.305 3.695 6 O -0.393 6.393 7 C -0.149 4.149 8 C -0.162 4.162 9 C -0.005 4.005 10 N -0.362 5.362 11 C 0.291 3.709 12 O -0.391 6.391 13 C 0.277 3.723 14 O -0.418 6.418 15 N -0.315 5.315 16 C 0.028 3.972 17 C -0.021 4.021 18 C -0.529 4.529 19 H 0.098 0.902 20 C -0.124 4.124 21 N -0.529 5.529 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.184 1.184 26 C -0.214 4.214 27 C -0.230 4.230 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.250 0.750 42 H 0.253 0.747 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.464 25.928 -12.817 28.927 hybrid contribution -0.226 -0.777 -0.810 1.145 sum 0.238 25.152 -13.628 28.607 Atomic orbital electron populations 1.22216 0.94184 1.03199 1.03204 1.22760 0.94712 0.93103 0.86967 1.21899 1.02147 0.93403 1.03277 1.86571 1.76984 1.22336 1.41312 1.23729 0.74273 0.81280 0.90233 1.90686 1.47777 1.69978 1.30908 1.21274 1.04523 0.93980 0.95075 1.21629 1.03947 0.92307 0.98277 1.21376 1.02175 0.79784 0.97167 1.45677 1.66760 1.07745 1.16026 1.20382 0.78013 0.87384 0.85108 1.90764 1.47894 1.80278 1.20178 1.19926 0.79969 0.86594 0.85778 1.90720 1.49494 1.79849 1.21696 1.45717 1.61471 1.09952 1.14390 1.21362 1.00391 0.79047 0.96361 1.19623 0.90378 0.96666 0.95437 1.20196 1.11768 1.14143 1.06771 0.90202 1.24988 0.94512 0.97327 0.95546 1.69886 1.16998 1.32388 1.33670 0.86853 0.76750 0.81791 0.83723 1.20171 1.22098 1.18433 1.22862 0.98133 1.00135 1.00282 1.22980 1.06496 0.93464 1.00057 0.90621 0.91889 0.91432 0.89677 0.91631 0.90311 0.91287 0.87008 0.87071 0.89929 0.89853 0.90588 0.90678 0.75014 0.74666 0.90831 0.93228 0.92427 0.90774 0.89192 0.88939 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 9.55 37.16 0.35 -0.62 16 2 C 0.08 0.52 3.18 -26.73 -0.09 0.43 16 3 C -0.15 -0.65 9.57 37.16 0.36 -0.29 16 4 O -0.35 -2.78 9.88 -39.25 -0.39 -3.16 16 5 C 0.46 3.84 7.93 36.00 0.29 4.12 16 6 O -0.51 -5.67 15.20 -18.75 -0.29 -5.95 16 7 C -0.11 -0.61 5.81 -27.88 -0.16 -0.77 16 8 C -0.12 -0.86 4.62 -26.73 -0.12 -0.99 16 9 C 0.12 1.03 5.67 -4.05 -0.02 1.01 16 10 N -0.71 -8.39 5.55 -60.73 -0.34 -8.72 16 11 C 0.51 8.03 7.89 -11.58 -0.09 7.94 16 12 O -0.52 -9.12 16.48 5.50 0.09 -9.03 16 13 C 0.50 9.06 7.88 -11.58 -0.09 8.97 16 14 O -0.54 -10.63 16.47 5.50 0.09 -10.54 16 15 N -0.67 -12.84 5.45 -60.73 -0.33 -13.17 16 16 C 0.15 3.13 5.23 -4.04 -0.02 3.11 16 17 C -0.02 -0.43 0.85 -155.66 -0.13 -0.57 16 18 C -0.49 -13.01 9.29 -34.44 -0.32 -13.33 16 19 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 22 Si 0.88 21.28 24.76 -169.99 -4.21 17.07 16 23 H -0.28 -6.47 7.01 56.52 0.40 -6.07 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.26 -6.00 5.98 56.52 0.34 -5.66 16 26 C -0.18 -3.36 9.96 -26.70 -0.27 -3.63 16 27 C -0.19 -3.87 7.59 -26.69 -0.20 -4.07 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.64 7.16 -51.93 -0.37 0.26 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.41 4.52 7.95 -40.82 -0.32 4.20 16 42 H 0.42 7.99 7.92 -40.82 -0.32 7.67 16 43 H 0.07 1.68 6.74 -51.93 -0.35 1.33 16 44 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 48 H 0.09 1.96 7.07 -51.93 -0.37 1.59 16 49 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -33.16 411.69 -7.13 -40.29 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.12 Total: 9.34 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.62 Total: 3.43 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.11 Total: -47.64 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.49 Total: -28.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.21 Total: 17.07 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.16 -7.13 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324830322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.664 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds