Wall clock time and date at job start Sat Apr 11 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 O 1.45206 * 109.47382 * 119.99736 * 2 1 3 5 5 C 1.34227 * 116.99728 * 89.99822 * 4 2 1 6 6 O 1.20825 * 120.00197 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99869 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47226 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47446 * 179.97438 * 8 7 5 10 10 N 1.46495 * 109.47432 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00042 * 179.97438 * 10 9 8 12 12 O 1.21345 * 120.00257 * 0.02562 * 11 10 9 13 13 C 1.49451 * 119.99567 * 180.02562 * 11 10 9 14 14 O 1.21346 * 120.00584 * 357.83566 * 13 11 10 15 15 N 1.34784 * 119.99515 * 178.10243 * 13 11 10 16 16 C 1.46503 * 119.99781 * 184.83279 * 15 13 11 17 17 C 1.52996 * 109.46751 * 184.39345 * 16 15 13 18 18 C 1.50705 * 115.54960 * 64.93463 * 17 16 15 19 19 H 1.07999 * 119.99669 * 266.85407 * 18 17 16 20 20 C 1.37881 * 120.00127 * 86.85696 * 18 17 16 21 21 N 1.31513 * 119.99865 * 180.89321 * 20 18 17 22 22 Si 1.86800 * 119.99819 * 0.89524 * 20 18 17 23 23 H 1.48503 * 109.47200 * 84.92681 * 22 20 18 24 24 H 1.48494 * 109.46883 * 204.92548 * 22 20 18 25 25 H 1.48493 * 109.47254 * 324.92945 * 22 20 18 26 26 C 1.52994 * 117.50240 * 279.26149 * 17 16 15 27 27 C 1.52998 * 117.50050 * 210.59810 * 17 16 15 28 28 H 1.08994 * 109.46963 * 59.99958 * 1 2 3 29 29 H 1.08998 * 109.46568 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46746 * 299.99865 * 1 2 3 31 31 H 1.08994 * 109.47348 * 240.00223 * 2 1 3 32 32 H 1.09001 * 109.47603 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47427 * 300.00274 * 3 2 1 34 34 H 1.09008 * 109.47397 * 60.00002 * 3 2 1 35 35 H 1.08996 * 109.47044 * 60.00067 * 7 5 4 36 36 H 1.09000 * 109.47332 * 299.99980 * 7 5 4 37 37 H 1.09004 * 109.47298 * 59.99566 * 8 7 5 38 38 H 1.08997 * 109.47240 * 300.00037 * 8 7 5 39 39 H 1.09004 * 109.47112 * 59.99592 * 9 8 7 40 40 H 1.09005 * 109.46800 * 300.00308 * 9 8 7 41 41 H 0.97002 * 119.99985 * 0.02562 * 10 9 8 42 42 H 0.97000 * 120.00097 * 4.84521 * 15 13 11 43 43 H 1.09000 * 109.47451 * 304.39333 * 16 15 13 44 44 H 1.09000 * 109.46963 * 64.39659 * 16 15 13 45 45 H 0.97001 * 119.99653 * 179.97438 * 21 20 18 46 46 H 1.09002 * 117.50039 * 0.02562 * 26 17 16 47 47 H 1.09003 * 117.50292 * 145.02075 * 26 17 16 48 48 H 1.08994 * 117.50652 * 214.98066 * 27 17 16 49 49 H 1.09005 * 117.49737 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2172 -2.0075 1.0852 6 8 1.9983 -2.5748 0.0411 7 6 2.7184 -2.7852 2.2747 8 6 2.8637 -4.2603 1.8951 9 6 3.3731 -5.0499 3.1025 10 7 3.5116 -6.4623 2.7393 11 6 3.9490 -7.3529 3.6514 12 8 4.2276 -6.9850 4.7737 13 6 4.0909 -8.7937 3.2806 14 8 3.7751 -9.1686 2.1705 15 7 4.5645 -9.6778 4.1810 16 6 4.8036 -11.0683 3.7864 17 6 5.2314 -11.8795 5.0110 18 6 4.1915 -12.0212 6.0925 19 1 4.1677 -11.3203 6.9139 20 6 3.2705 -13.0456 6.0334 21 7 2.3521 -13.1589 6.9679 22 14 3.3274 -14.2726 4.6261 23 1 4.2962 -15.3510 4.9484 24 1 1.9788 -14.8618 4.4282 25 1 3.7526 -13.5807 3.3829 26 6 6.6949 -11.7826 5.4465 27 6 6.1769 -13.0602 4.7812 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 2.0089 -2.6894 3.0965 36 1 3.6873 -2.3928 2.5834 37 1 3.5733 -4.3558 1.0733 38 1 1.8950 -4.6531 1.5861 39 1 2.6637 -4.9544 3.9246 40 1 4.3419 -4.6569 3.4111 41 1 3.2893 -6.7564 1.8421 42 1 4.7469 -9.3935 5.0902 43 1 3.8882 -11.4910 3.3723 44 1 5.5920 -11.1022 3.0345 45 1 1.7040 -13.8793 6.9261 46 1 7.3529 -11.1406 4.8609 47 1 6.9056 -11.8217 6.5153 48 1 6.0472 -13.9392 5.4124 49 1 6.4938 -13.2593 3.7574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324830322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:56 Heat of formation + Delta-G solvation = -171.576563 kcal Electronic energy + Delta-G solvation = -28479.651098 eV Core-core repulsion = 24213.415627 eV Total energy + Delta-G solvation = -4266.235471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71914 -41.56386 -39.80216 -38.68921 -38.14431 -36.90157 -35.16187 -34.29987 -34.21251 -33.60076 -29.35383 -28.49735 -28.21663 -27.40383 -25.09642 -23.55934 -23.26218 -22.42739 -21.56461 -21.30169 -20.94348 -19.54500 -18.84693 -18.26751 -17.90513 -17.61935 -17.31191 -17.14470 -16.85006 -16.44915 -16.20556 -16.06695 -15.42801 -15.26516 -15.10010 -14.76205 -14.68587 -14.55043 -14.29910 -14.15657 -13.77950 -13.46192 -13.35312 -13.16446 -13.13366 -13.08996 -12.79865 -12.71781 -12.63705 -12.55802 -12.16767 -11.99688 -11.98394 -11.91493 -11.64091 -11.60687 -11.43338 -11.00979 -10.81492 -10.65903 -10.36594 -10.30850 -10.05715 -8.29354 -6.37193 0.36312 1.18275 1.29778 1.36441 1.40821 1.50281 1.72580 2.16126 2.36967 2.66600 3.05119 3.22949 3.51270 3.55961 3.79944 3.87757 3.91902 3.96241 3.98370 4.11134 4.16239 4.33901 4.40132 4.47635 4.48613 4.55423 4.65435 4.68189 4.73895 4.74507 4.83185 4.88176 4.89503 5.03314 5.07723 5.09584 5.12394 5.20378 5.22515 5.25198 5.32062 5.50164 5.53857 5.68357 5.96837 6.28051 6.41053 6.71859 6.73209 6.75394 6.97439 7.33410 8.85556 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.001606 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.684713 B =17425.507903 C =17652.756694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 C -0.145 4.145 4 O -0.358 6.358 5 C 0.461 3.539 6 O -0.542 6.542 7 C -0.105 4.105 8 C -0.114 4.114 9 C 0.117 3.883 10 N -0.691 5.691 11 C 0.514 3.486 12 O -0.540 6.540 13 C 0.496 3.504 14 O -0.555 6.555 15 N -0.672 5.672 16 C 0.159 3.841 17 C -0.048 4.048 18 C -0.482 4.482 19 H 0.039 0.961 20 C 0.022 3.978 21 N -0.946 5.946 22 Si 0.936 3.064 23 H -0.261 1.261 24 H -0.304 1.304 25 H -0.240 1.240 26 C -0.154 4.154 27 C -0.186 4.186 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.419 0.581 42 H 0.415 0.585 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.264 0.736 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 27.582 -14.218 31.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 C -0.202 4.202 4 O -0.275 6.275 5 C 0.306 3.694 6 O -0.432 6.432 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.005 4.005 10 N -0.344 5.344 11 C 0.294 3.706 12 O -0.417 6.417 13 C 0.277 3.723 14 O -0.435 6.435 15 N -0.321 5.321 16 C 0.036 3.964 17 C -0.049 4.049 18 C -0.520 4.520 19 H 0.057 0.943 20 C -0.176 4.176 21 N -0.585 5.585 22 Si 0.761 3.239 23 H -0.186 1.186 24 H -0.231 1.231 25 H -0.163 1.163 26 C -0.191 4.191 27 C -0.224 4.224 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.256 0.744 42 H 0.252 0.748 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.006 27.362 -14.463 31.015 hybrid contribution -0.709 -1.070 -0.284 1.314 sum 1.297 26.293 -14.747 30.174 Atomic orbital electron populations 1.22210 0.93635 1.02298 1.04377 1.22969 0.95287 0.94090 0.86084 1.21905 1.02098 0.91876 1.04342 1.86573 1.76818 1.22186 1.41895 1.24247 0.73369 0.81390 0.90416 1.90673 1.49496 1.70564 1.32460 1.21334 1.06229 0.92406 0.94307 1.21502 1.03268 0.93080 0.97308 1.21597 1.03080 0.77853 0.97999 1.45721 1.64590 1.08587 1.15488 1.19924 0.78677 0.86636 0.85328 1.90761 1.49597 1.80252 1.21063 1.20366 0.79024 0.87656 0.85250 1.90704 1.50013 1.80469 1.22286 1.45744 1.61987 1.09815 1.14596 1.21158 0.99936 0.79373 0.95960 1.19478 0.90770 0.99463 0.95214 1.20353 1.12562 1.12395 1.06666 0.94310 1.25807 0.94317 0.99541 0.97931 1.70036 1.18570 1.33684 1.36231 0.85960 0.76550 0.79900 0.81522 1.18563 1.23141 1.16306 1.22899 0.95922 0.99706 1.00540 1.23052 1.04937 0.92764 1.01652 0.88987 0.93758 0.90747 0.91079 0.91696 0.88638 0.90814 0.85053 0.84672 0.90221 0.90705 0.90175 0.89481 0.74389 0.74805 0.93299 0.90702 0.92662 0.87532 0.89811 0.90224 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.55 71.98 0.69 -1.10 16 2 C 0.07 0.87 3.18 30.60 0.10 0.96 16 3 C -0.15 -1.03 9.57 71.98 0.69 -0.34 16 4 O -0.36 -5.23 9.88 -51.39 -0.51 -5.74 16 5 C 0.46 7.22 7.93 71.24 0.56 7.79 16 6 O -0.54 -12.11 15.20 21.97 0.33 -11.78 16 7 C -0.11 -0.93 5.81 29.85 0.17 -0.76 16 8 C -0.11 -1.39 4.62 30.59 0.14 -1.25 16 9 C 0.12 1.80 5.67 86.38 0.49 2.29 16 10 N -0.69 -15.33 5.55 -464.42 -2.58 -17.91 16 11 C 0.51 15.65 7.89 87.27 0.69 16.34 16 12 O -0.54 -18.62 16.48 -3.23 -0.05 -18.67 16 13 C 0.50 17.64 7.88 87.27 0.69 18.33 16 14 O -0.56 -21.31 16.47 -3.24 -0.05 -21.36 16 15 N -0.67 -25.44 5.45 -464.40 -2.53 -27.97 16 16 C 0.16 6.32 5.23 86.38 0.45 6.77 16 17 C -0.05 -2.04 0.85 -52.93 -0.04 -2.09 16 18 C -0.48 -26.01 9.29 25.60 0.24 -25.77 16 19 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 20 C 0.02 1.24 5.47 84.66 0.46 1.71 16 21 N -0.95 -58.27 13.96 21.45 0.30 -57.97 16 22 Si 0.94 43.73 24.76 68.60 1.70 45.42 16 23 H -0.26 -11.46 7.01 99.48 0.70 -10.76 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.24 -10.34 5.98 99.48 0.60 -9.75 16 26 C -0.15 -5.42 9.96 30.62 0.30 -5.12 16 27 C -0.19 -6.93 7.59 30.62 0.23 -6.70 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.07 7.16 -2.39 -0.02 1.06 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.46 8.14 -2.38 -0.02 0.45 16 35 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.42 8.57 7.95 -92.71 -0.74 7.84 16 42 H 0.42 15.93 7.92 -92.71 -0.73 15.20 16 43 H 0.05 2.17 6.74 -2.39 -0.02 2.16 16 44 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 45 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 48 H 0.08 3.18 7.07 -2.39 -0.02 3.17 16 49 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -73.82 411.69 1.85 -71.97 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.63 Total: 32.95 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.87 Total: 11.06 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.81 Total: -103.85 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -0.28 Total: -57.55 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.70 Total: 45.42 kcal Total: -73.82 1.85 -71.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324830322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.610 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds