Wall clock time and date at job start Sat Apr 11 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48025 * 2 1 4 4 C 1.53092 * 109.48305 * 239.96492 * 2 1 3 5 5 C 1.53168 * 109.16180 * 297.62507 * 4 2 1 6 6 H 1.09005 * 109.62158 * 62.92864 * 5 4 2 7 7 C 1.53006 * 109.54428 * 183.14959 * 5 4 2 8 8 N 1.46505 * 109.46890 * 184.55650 * 7 5 4 9 9 C 1.34781 * 119.99339 * 180.02562 * 8 7 5 10 10 O 1.21348 * 120.00403 * 359.97438 * 9 8 7 11 11 C 1.49445 * 119.99594 * 179.97438 * 9 8 7 12 12 O 1.21346 * 120.00466 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00122 * 179.97438 * 11 9 8 14 14 C 1.47022 * 125.64528 * 0.03092 * 13 11 9 15 15 C 1.54327 * 107.27336 * 178.90269 * 14 13 11 16 16 C 1.55165 * 102.94078 * 337.80587 * 15 14 13 17 17 O 1.42901 * 111.00376 * 277.43038 * 16 15 14 18 18 C 1.50698 * 111.00281 * 153.57654 * 16 15 14 19 19 H 1.08001 * 120.00333 * 359.97438 * 18 16 15 20 20 C 1.37877 * 119.99787 * 180.02562 * 18 16 15 21 21 N 1.31521 * 119.99985 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00125 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46819 * 90.00126 * 22 20 18 24 24 H 1.48501 * 109.47112 * 209.99881 * 22 20 18 25 25 H 1.48502 * 109.46859 * 329.99849 * 22 20 18 26 26 C 1.47425 * 125.65136 * 179.97438 * 13 11 9 27 27 C 1.53175 * 109.03857 * 303.01877 * 5 4 2 28 28 C 1.53097 * 109.16409 * 56.98121 * 27 5 4 29 29 O 1.42898 * 109.41087 * 302.39263 * 28 27 5 30 30 H 1.09002 * 109.47321 * 299.97611 * 1 2 3 31 31 H 1.08994 * 109.47285 * 59.97641 * 1 2 3 32 32 H 1.09004 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52348 * 177.71617 * 4 2 1 34 34 H 1.09000 * 109.51749 * 57.53024 * 4 2 1 35 35 H 1.08996 * 109.46818 * 64.56067 * 7 5 4 36 36 H 1.08996 * 109.46940 * 304.55456 * 7 5 4 37 37 H 0.96994 * 120.00391 * 0.02562 * 8 7 5 38 38 H 1.08997 * 109.88723 * 59.48678 * 14 13 11 39 39 H 1.09000 * 110.01436 * 298.39230 * 14 13 11 40 40 H 1.08993 * 110.72079 * 96.16743 * 15 14 13 41 41 H 1.09002 * 110.72173 * 219.44580 * 15 14 13 42 42 H 0.96700 * 113.99672 * 180.02562 * 17 16 15 43 43 H 0.96997 * 119.99895 * 180.02562 * 21 20 18 44 44 H 1.08997 * 110.36855 * 323.00479 * 26 13 11 45 45 H 1.08999 * 110.36490 * 85.21794 * 26 13 11 46 46 H 1.09005 * 109.52688 * 176.88479 * 27 5 4 47 47 H 1.09002 * 109.52301 * 297.01260 * 27 5 4 48 48 H 1.08995 * 109.47657 * 62.37417 * 28 27 5 49 49 H 1.08999 * 109.47984 * 182.40161 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5758 -2.1814 -1.2119 6 1 0.4868 -2.2195 -1.2412 7 6 2.1468 -2.9317 -2.4169 8 7 1.6146 -4.2964 -2.4393 9 6 1.9821 -5.1470 -3.4181 10 8 2.7535 -4.7823 -4.2810 11 6 1.4397 -6.5393 -3.4408 12 8 0.6679 -6.9040 -2.5783 13 7 1.8068 -7.3897 -4.4198 14 6 2.7293 -7.0805 -5.5220 15 6 2.8694 -8.3592 -6.3747 16 6 2.4615 -9.4829 -5.3855 17 8 3.5604 -9.8545 -4.5510 18 6 1.9166 -10.6793 -6.1222 19 1 1.8545 -10.6675 -7.2004 20 6 1.4963 -11.7888 -5.4197 21 7 1.5705 -11.8027 -4.1066 22 14 0.8203 -13.2716 -6.3327 23 1 1.9309 -14.2035 -6.6542 24 1 -0.1771 -13.9659 -5.4792 25 1 0.1696 -12.8241 -7.5903 26 6 1.3507 -8.7844 -4.5622 27 6 2.0765 -2.8321 0.0812 28 6 1.5645 -2.0282 1.2794 29 8 2.0066 -0.6740 1.1665 30 1 -0.3634 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 -0.6875 -1.2709 34 1 1.6421 -0.2359 -2.1398 35 1 3.2336 -2.9668 -2.3413 36 1 1.8628 -2.4158 -3.3340 37 1 0.9977 -4.5879 -1.7499 38 1 3.7018 -6.7934 -5.1220 39 1 2.3255 -6.2715 -6.1307 40 1 2.1907 -8.3306 -7.2270 41 1 3.8997 -8.4915 -6.7050 42 1 3.3533 -10.5542 -3.9164 43 1 1.2752 -12.5833 -3.6124 44 1 1.2525 -9.2533 -3.5832 45 1 0.4011 -8.8203 -5.0961 46 1 1.7037 -3.8546 0.1426 47 1 3.1665 -2.8409 0.0863 48 1 0.4751 -2.0548 1.2960 49 1 1.9530 -2.4620 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326125104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:06 Heat of formation + Delta-G solvation = -171.539702 kcal Electronic energy + Delta-G solvation = -30447.890815 eV Core-core repulsion = 26181.656942 eV Total energy + Delta-G solvation = -4266.233873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.60191 -40.03338 -38.47148 -37.19094 -36.05057 -34.35191 -33.30003 -32.39496 -32.18911 -30.24530 -29.13406 -27.99207 -27.06491 -25.61113 -23.92490 -23.72224 -22.43138 -21.46964 -19.98115 -19.66747 -19.34149 -17.49113 -17.22185 -16.71511 -16.50759 -16.31998 -16.02121 -15.54279 -15.16648 -15.12429 -14.90358 -14.60350 -14.34859 -14.11472 -13.79033 -13.53543 -13.09427 -13.07173 -12.95724 -12.80686 -12.48346 -12.39430 -12.30246 -12.15160 -11.65938 -11.62166 -11.55450 -11.34981 -11.15083 -11.08233 -10.98529 -10.80308 -10.57200 -10.49841 -10.44927 -10.21866 -9.83781 -9.43307 -9.25472 -9.16781 -8.71613 -8.44931 -7.91175 -6.33610 -4.43021 1.78062 2.61840 3.18331 3.25963 3.28421 3.49580 3.58586 3.86306 4.22661 4.22992 4.30137 4.31362 4.55234 4.67772 4.72757 4.91406 4.94082 4.97213 4.98835 5.05812 5.24267 5.25890 5.36793 5.46572 5.48061 5.55054 5.55992 5.68224 5.71882 5.78519 5.78900 5.85104 5.97269 6.04124 6.18455 6.33340 6.48980 6.71350 6.76258 6.81667 6.87315 7.14157 7.21933 7.28947 7.70048 7.84591 7.95922 8.02937 8.42255 8.60988 9.26918 9.42568 10.73758 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.002121 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.146175 B =13199.102576 C =13631.224742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.087 3.913 3 H 0.103 0.897 4 C -0.141 4.141 5 C -0.103 4.103 6 H 0.083 0.917 7 C 0.125 3.875 8 N -0.708 5.708 9 C 0.510 3.490 10 O -0.516 6.516 11 C 0.507 3.493 12 O -0.540 6.540 13 N -0.572 5.572 14 C 0.112 3.888 15 C -0.122 4.122 16 C 0.249 3.751 17 O -0.583 6.583 18 C -0.536 4.536 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.896 5.896 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.090 3.910 27 C -0.155 4.155 28 C 0.057 3.943 29 O -0.378 6.378 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.272 0.728 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 20.924 7.076 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.029 3.971 3 H 0.121 0.879 4 C -0.180 4.180 5 C -0.122 4.122 6 H 0.101 0.899 7 C 0.002 3.998 8 N -0.362 5.362 9 C 0.291 3.709 10 O -0.391 6.391 11 C 0.289 3.711 12 O -0.419 6.419 13 N -0.304 5.304 14 C -0.011 4.011 15 C -0.160 4.160 16 C 0.208 3.792 17 O -0.393 6.393 18 C -0.574 4.574 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.535 5.535 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.031 4.031 27 C -0.192 4.192 28 C -0.019 4.019 29 O -0.297 6.297 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.238 0.762 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.978 21.472 6.886 22.570 hybrid contribution -1.193 -1.525 0.030 1.936 sum -2.170 19.946 6.915 21.222 Atomic orbital electron populations 1.22480 0.96352 1.02953 1.02811 1.22156 0.93501 0.96400 0.85008 0.87937 1.22164 1.02333 0.94610 0.98847 1.21487 1.01199 0.95118 0.94383 0.89879 1.21451 0.99096 0.81129 0.98135 1.45743 1.48689 1.12529 1.29283 1.20413 0.81764 0.86760 0.81962 1.90729 1.33777 1.77681 1.36930 1.19574 0.83215 0.85631 0.82656 1.90716 1.36059 1.77565 1.37576 1.48632 1.43370 1.14044 1.24361 1.22138 0.93279 0.97853 0.87830 1.22728 1.02252 0.93272 0.97772 1.19605 0.82678 0.90708 0.86167 1.86089 1.38747 1.60567 1.53900 1.21502 1.42664 0.99299 0.93982 0.91297 1.25102 0.94274 0.98922 0.95009 1.69564 1.47413 1.30757 1.05788 0.86363 0.78770 0.81923 0.79625 1.20334 1.20984 1.19653 1.23520 0.99620 0.76838 1.03140 1.22300 1.02514 0.99954 0.94461 1.22589 0.98888 0.82104 0.98349 1.87998 1.73696 1.24850 1.43112 0.91818 0.91369 0.91714 0.90471 0.90387 0.90930 0.90976 0.75306 0.91176 0.91758 0.90407 0.90464 0.76195 0.91821 0.89540 0.91409 0.90433 0.90534 0.92726 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 8.65 37.16 0.32 -0.78 16 2 C 0.09 0.59 3.91 -26.68 -0.10 0.48 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.14 -0.92 4.92 -26.60 -0.13 -1.05 16 5 C -0.10 -0.77 2.00 -90.44 -0.18 -0.95 16 6 H 0.08 0.59 6.62 -51.93 -0.34 0.24 16 7 C 0.13 1.23 5.08 -4.04 -0.02 1.21 16 8 N -0.71 -8.90 5.31 -60.73 -0.32 -9.22 16 9 C 0.51 8.52 7.86 -11.59 -0.09 8.43 16 10 O -0.52 -9.34 14.12 5.50 0.08 -9.26 16 11 C 0.51 10.12 7.91 -11.59 -0.09 10.03 16 12 O -0.54 -11.64 16.73 5.50 0.09 -11.55 16 13 N -0.57 -12.11 3.33 -171.03 -0.57 -12.68 16 14 C 0.11 2.16 5.49 -3.06 -0.02 2.14 16 15 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16 16 C 0.25 6.02 0.89 -89.62 -0.08 5.94 16 17 O -0.58 -14.99 13.18 -35.23 -0.46 -15.45 16 18 C -0.54 -13.72 8.25 -34.44 -0.28 -14.01 16 19 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 20 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 21 N -0.90 -23.44 10.71 55.43 0.59 -22.84 16 22 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.09 2.12 5.62 -2.53 -0.01 2.11 16 27 C -0.15 -1.20 5.25 -26.59 -0.14 -1.34 16 28 C 0.06 0.43 6.52 37.21 0.24 0.67 16 29 O -0.38 -3.36 10.60 -35.23 -0.37 -3.73 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 4.98 -51.93 -0.26 0.14 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.41 4.77 7.15 -40.82 -0.29 4.48 16 38 H 0.07 1.38 7.58 -51.93 -0.39 0.98 16 39 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 40 H 0.08 1.47 8.01 -51.93 -0.42 1.05 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.39 10.19 6.93 45.56 0.32 10.50 16 43 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.09 2.26 7.64 -51.93 -0.40 1.86 16 45 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 46 H 0.08 0.62 7.28 -51.93 -0.38 0.24 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.37 6.34 -51.93 -0.33 0.04 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -29.48 384.38 -8.11 -37.59 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.08 Total: 14.43 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -0.84 Total: 11.93 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.30 Total: -44.74 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.67 Total: -39.99 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.48 -8.11 -37.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326125104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.947 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds