Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48025 * 2 1 4 4 C 1.53092 * 109.48305 * 239.96492 * 2 1 3 5 5 C 1.53168 * 109.16180 * 297.62507 * 4 2 1 6 6 H 1.09005 * 109.62158 * 62.92864 * 5 4 2 7 7 C 1.53006 * 109.54428 * 183.14959 * 5 4 2 8 8 N 1.46505 * 109.46890 * 184.55650 * 7 5 4 9 9 C 1.34781 * 119.99339 * 180.02562 * 8 7 5 10 10 O 1.21348 * 120.00403 * 359.97438 * 9 8 7 11 11 C 1.49445 * 119.99594 * 179.97438 * 9 8 7 12 12 O 1.21346 * 120.00466 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00122 * 179.97438 * 11 9 8 14 14 C 1.47022 * 125.64528 * 0.03092 * 13 11 9 15 15 C 1.54327 * 107.27336 * 178.90269 * 14 13 11 16 16 C 1.55165 * 102.94078 * 337.80587 * 15 14 13 17 17 O 1.42901 * 111.00376 * 277.43038 * 16 15 14 18 18 C 1.50698 * 111.00281 * 153.57654 * 16 15 14 19 19 H 1.08001 * 120.00333 * 359.97438 * 18 16 15 20 20 C 1.37877 * 119.99787 * 180.02562 * 18 16 15 21 21 N 1.31521 * 119.99985 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00125 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46819 * 90.00126 * 22 20 18 24 24 H 1.48501 * 109.47112 * 209.99881 * 22 20 18 25 25 H 1.48502 * 109.46859 * 329.99849 * 22 20 18 26 26 C 1.47425 * 125.65136 * 179.97438 * 13 11 9 27 27 C 1.53175 * 109.03857 * 303.01877 * 5 4 2 28 28 C 1.53097 * 109.16409 * 56.98121 * 27 5 4 29 29 O 1.42898 * 109.41087 * 302.39263 * 28 27 5 30 30 H 1.09002 * 109.47321 * 299.97611 * 1 2 3 31 31 H 1.08994 * 109.47285 * 59.97641 * 1 2 3 32 32 H 1.09004 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52348 * 177.71617 * 4 2 1 34 34 H 1.09000 * 109.51749 * 57.53024 * 4 2 1 35 35 H 1.08996 * 109.46818 * 64.56067 * 7 5 4 36 36 H 1.08996 * 109.46940 * 304.55456 * 7 5 4 37 37 H 0.96994 * 120.00391 * 0.02562 * 8 7 5 38 38 H 1.08997 * 109.88723 * 59.48678 * 14 13 11 39 39 H 1.09000 * 110.01436 * 298.39230 * 14 13 11 40 40 H 1.08993 * 110.72079 * 96.16743 * 15 14 13 41 41 H 1.09002 * 110.72173 * 219.44580 * 15 14 13 42 42 H 0.96700 * 113.99672 * 180.02562 * 17 16 15 43 43 H 0.96997 * 119.99895 * 180.02562 * 21 20 18 44 44 H 1.08997 * 110.36855 * 323.00479 * 26 13 11 45 45 H 1.08999 * 110.36490 * 85.21794 * 26 13 11 46 46 H 1.09005 * 109.52688 * 176.88479 * 27 5 4 47 47 H 1.09002 * 109.52301 * 297.01260 * 27 5 4 48 48 H 1.08995 * 109.47657 * 62.37417 * 28 27 5 49 49 H 1.08999 * 109.47984 * 182.40161 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5758 -2.1814 -1.2119 6 1 0.4868 -2.2195 -1.2412 7 6 2.1468 -2.9317 -2.4169 8 7 1.6146 -4.2964 -2.4393 9 6 1.9821 -5.1470 -3.4181 10 8 2.7535 -4.7823 -4.2810 11 6 1.4397 -6.5393 -3.4408 12 8 0.6679 -6.9040 -2.5783 13 7 1.8068 -7.3897 -4.4198 14 6 2.7293 -7.0805 -5.5220 15 6 2.8694 -8.3592 -6.3747 16 6 2.4615 -9.4829 -5.3855 17 8 3.5604 -9.8545 -4.5510 18 6 1.9166 -10.6793 -6.1222 19 1 1.8545 -10.6675 -7.2004 20 6 1.4963 -11.7888 -5.4197 21 7 1.5705 -11.8027 -4.1066 22 14 0.8203 -13.2716 -6.3327 23 1 1.9309 -14.2035 -6.6542 24 1 -0.1771 -13.9659 -5.4792 25 1 0.1696 -12.8241 -7.5903 26 6 1.3507 -8.7844 -4.5622 27 6 2.0765 -2.8321 0.0812 28 6 1.5645 -2.0282 1.2794 29 8 2.0066 -0.6740 1.1665 30 1 -0.3634 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 -0.6875 -1.2709 34 1 1.6421 -0.2359 -2.1398 35 1 3.2336 -2.9668 -2.3413 36 1 1.8628 -2.4158 -3.3340 37 1 0.9977 -4.5879 -1.7499 38 1 3.7018 -6.7934 -5.1220 39 1 2.3255 -6.2715 -6.1307 40 1 2.1907 -8.3306 -7.2270 41 1 3.8997 -8.4915 -6.7050 42 1 3.3533 -10.5542 -3.9164 43 1 1.2752 -12.5833 -3.6124 44 1 1.2525 -9.2533 -3.5832 45 1 0.4011 -8.8203 -5.0961 46 1 1.7037 -3.8546 0.1426 47 1 3.1665 -2.8409 0.0863 48 1 0.4751 -2.0548 1.2960 49 1 1.9530 -2.4620 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326125104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = -193.507081 kcal Electronic energy + Delta-G solvation = -30448.843392 eV Core-core repulsion = 26181.656942 eV Total energy + Delta-G solvation = -4267.186450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87052 -40.88299 -39.94048 -38.88296 -37.04261 -36.08203 -34.18868 -34.15731 -33.00697 -31.97100 -29.89284 -29.67427 -28.11262 -27.14602 -25.21246 -24.49981 -23.57949 -22.58342 -21.55894 -21.04819 -20.15605 -19.23195 -18.81553 -18.02414 -17.35361 -17.25230 -17.09125 -17.01758 -16.69807 -16.27000 -16.23519 -15.74426 -15.47997 -15.23620 -14.94455 -14.70907 -14.69044 -14.45553 -14.11998 -13.97883 -13.63707 -13.50488 -13.35801 -13.17554 -13.00568 -12.85929 -12.72612 -12.67061 -12.54692 -12.31993 -12.22891 -12.15313 -12.12446 -11.95488 -11.59149 -11.26510 -11.02141 -10.75026 -10.60077 -10.42282 -10.37738 -10.31155 -9.64811 -8.27200 -6.43849 0.32444 1.25697 1.44066 1.46032 1.55408 2.10459 2.36650 2.50302 2.96306 2.98764 3.29883 3.55789 3.68224 3.75085 3.77029 4.01747 4.07431 4.14408 4.18129 4.31432 4.33114 4.39358 4.44011 4.47902 4.63570 4.64520 4.69023 4.72213 4.74231 4.83360 4.93766 4.97280 5.01438 5.05037 5.09451 5.13158 5.15619 5.18445 5.27798 5.33347 5.41988 5.44047 5.74460 5.95101 6.03370 6.32761 6.35522 6.59649 6.66195 6.90387 7.28505 7.37931 8.78872 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.002121 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.146175 B =13199.102576 C =13631.224742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 H 0.112 0.888 4 C -0.137 4.137 5 C -0.095 4.095 6 H 0.093 0.907 7 C 0.125 3.875 8 N -0.688 5.688 9 C 0.516 3.484 10 O -0.530 6.530 11 C 0.500 3.500 12 O -0.562 6.562 13 N -0.581 5.581 14 C 0.119 3.881 15 C -0.116 4.116 16 C 0.233 3.767 17 O -0.591 6.591 18 C -0.554 4.554 19 H 0.072 0.928 20 C 0.026 3.974 21 N -0.918 5.918 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.103 3.897 27 C -0.154 4.154 28 C 0.057 3.943 29 O -0.398 6.398 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.378 0.622 43 H 0.272 0.728 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 22.490 6.330 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.025 3.975 3 H 0.130 0.870 4 C -0.175 4.175 5 C -0.114 4.114 6 H 0.111 0.889 7 C 0.003 3.997 8 N -0.341 5.341 9 C 0.297 3.703 10 O -0.407 6.407 11 C 0.284 3.716 12 O -0.442 6.442 13 N -0.313 5.313 14 C -0.002 4.002 15 C -0.154 4.154 16 C 0.192 3.808 17 O -0.400 6.400 18 C -0.592 4.592 19 H 0.090 0.910 20 C -0.175 4.175 21 N -0.557 5.557 22 Si 0.792 3.208 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.019 4.019 27 C -0.192 4.192 28 C -0.020 4.020 29 O -0.317 6.317 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.229 0.771 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.416 23.086 6.153 23.934 hybrid contribution -1.059 -1.955 0.338 2.249 sum -2.475 21.131 6.491 22.244 Atomic orbital electron populations 1.22458 0.95596 1.02918 1.03355 1.22314 0.94141 0.96696 0.84333 0.86990 1.22147 1.02131 0.93761 0.99500 1.21447 1.01594 0.95405 0.92906 0.88919 1.21663 0.98935 0.79458 0.99658 1.45737 1.47609 1.12989 1.27791 1.19760 0.81972 0.85647 0.82969 1.90724 1.34631 1.77497 1.37832 1.20271 0.82636 0.86942 0.81756 1.90694 1.36932 1.78390 1.38179 1.48675 1.43920 1.13284 1.25436 1.22149 0.92943 0.97847 0.87300 1.22741 1.03078 0.92052 0.97504 1.19862 0.82610 0.91605 0.86710 1.86080 1.39680 1.60292 1.53996 1.21794 1.42938 1.00175 0.94306 0.90974 1.25840 0.94520 1.01407 0.95687 1.69668 1.47876 1.31299 1.06898 0.85408 0.78022 0.78726 0.78600 1.20137 1.21028 1.18921 1.23107 0.99359 0.78449 1.01025 1.22282 1.01937 0.99949 0.95012 1.22630 0.99389 0.81672 0.98286 1.87975 1.74214 1.25366 1.44166 0.92017 0.90132 0.91990 0.90922 0.88809 0.91291 0.90186 0.74614 0.91407 0.89587 0.88807 0.89698 0.77064 0.91862 0.92868 0.92145 0.90737 0.91460 0.91879 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.65 71.98 0.62 -1.14 16 2 C 0.08 0.95 3.91 30.62 0.12 1.07 16 3 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -1.47 4.92 30.68 0.15 -1.32 16 5 C -0.09 -1.22 2.00 -10.68 -0.02 -1.24 16 6 H 0.09 1.07 6.62 -2.38 -0.02 1.05 16 7 C 0.13 2.20 5.08 86.38 0.44 2.64 16 8 N -0.69 -16.24 5.31 -464.40 -2.46 -18.70 16 9 C 0.52 16.65 7.86 87.27 0.69 17.33 16 10 O -0.53 -18.31 14.12 -3.24 -0.05 -18.36 16 11 C 0.50 19.87 7.91 87.27 0.69 20.56 16 12 O -0.56 -24.40 16.73 -3.23 -0.05 -24.46 16 13 N -0.58 -24.55 3.33 -813.38 -2.71 -27.26 16 14 C 0.12 4.49 5.49 86.73 0.48 4.96 16 15 C -0.12 -4.60 6.13 31.79 0.19 -4.40 16 16 C 0.23 11.30 0.89 -10.15 -0.01 11.29 16 17 O -0.59 -30.92 13.18 -148.98 -1.96 -32.88 16 18 C -0.55 -28.35 8.25 25.60 0.21 -28.14 16 19 H 0.07 3.55 7.76 -2.91 -0.02 3.53 16 20 C 0.03 1.34 5.30 84.65 0.45 1.78 16 21 N -0.92 -48.89 10.71 21.45 0.23 -48.66 16 22 Si 0.97 40.91 29.54 68.60 2.03 42.94 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 26 C 0.10 4.96 5.62 86.85 0.49 5.44 16 27 C -0.15 -2.21 5.25 30.69 0.16 -2.05 16 28 C 0.06 0.78 6.52 72.01 0.47 1.25 16 29 O -0.40 -6.55 10.60 -148.98 -1.58 -8.13 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.62 4.98 -2.38 -0.01 0.61 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.42 9.08 7.15 -92.71 -0.66 8.42 16 38 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 39 H 0.09 2.87 7.69 -2.39 -0.02 2.85 16 40 H 0.09 3.38 8.01 -2.39 -0.02 3.37 16 41 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.38 20.63 6.93 -74.06 -0.51 20.12 16 43 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 44 H 0.05 2.89 7.64 -2.39 -0.02 2.87 16 45 H 0.06 2.94 8.03 -2.39 -0.02 2.92 16 46 H 0.07 1.11 7.28 -2.38 -0.02 1.09 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 48 H 0.06 0.75 6.34 -2.39 -0.02 0.74 16 49 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -62.93 384.38 -1.63 -64.55 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -0.20 Total: 42.92 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 5.13 Total: 28.04 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.94 Total: -94.62 kcal Atomic # 8 Polarization: -80.18 SS G_CDS: -3.64 Total: -83.83 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -62.93 -1.63 -64.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326125104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.952 kcal (2) G-P(sol) polarization free energy of solvation -62.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds