Wall clock time and date at job start Sat Apr 11 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46966 * 2 1 4 4 O 1.42901 * 109.46423 * 240.00282 * 2 1 3 5 5 C 1.52996 * 109.47063 * 120.00593 * 2 1 3 6 6 H 1.08997 * 109.50312 * 60.06161 * 5 2 1 7 7 C 1.53046 * 109.49474 * 180.16024 * 5 2 1 8 8 C 1.53038 * 109.54095 * 181.31378 * 7 5 2 9 9 C 1.53625 * 109.24042 * 298.51324 * 8 7 5 10 10 N 1.46920 * 108.54748 * 54.85119 * 9 8 7 11 11 C 1.34782 * 120.63358 * 126.36679 * 10 9 8 12 12 O 1.21350 * 120.00416 * 174.76360 * 11 10 9 13 13 C 1.49453 * 119.99634 * 354.76964 * 11 10 9 14 14 O 1.21347 * 119.99997 * 6.19442 * 13 11 10 15 15 N 1.34778 * 119.99870 * 186.19818 * 13 11 10 16 16 C 1.47021 * 125.64781 * 0.02562 * 15 13 11 17 17 C 1.54322 * 107.26868 * 181.02102 * 16 15 13 18 18 C 1.55158 * 102.94521 * 22.19618 * 17 16 15 19 19 O 1.42897 * 111.00624 * 82.60224 * 18 17 16 20 20 C 1.50699 * 111.00344 * 206.42281 * 18 17 16 21 21 H 1.07995 * 120.00368 * 4.66520 * 20 18 17 22 22 C 1.37882 * 119.99431 * 184.66650 * 20 18 17 23 23 N 1.31513 * 120.00393 * 354.80889 * 22 20 18 24 24 Si 1.86799 * 119.99484 * 174.81290 * 22 20 18 25 25 H 1.48503 * 109.47437 * 94.99992 * 24 22 20 26 26 H 1.48501 * 109.47134 * 215.00112 * 24 22 20 27 27 H 1.48504 * 109.47441 * 334.99852 * 24 22 20 28 28 C 1.47417 * 125.64705 * 179.71411 * 15 13 11 29 29 C 1.46927 * 118.73847 * 306.10127 * 10 9 8 30 30 H 1.09007 * 109.46409 * 299.99387 * 1 2 3 31 31 H 1.08999 * 109.47371 * 59.99397 * 1 2 3 32 32 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 33 33 H 0.96697 * 114.00051 * 299.99298 * 4 2 1 34 34 H 1.09006 * 109.45723 * 301.33583 * 7 5 2 35 35 H 1.08998 * 109.45797 * 61.30461 * 7 5 2 36 36 H 1.09003 * 109.49522 * 58.58484 * 8 7 5 37 37 H 1.08996 * 109.50407 * 178.65256 * 8 7 5 38 38 H 1.09000 * 109.73761 * 295.11427 * 9 8 7 39 39 H 1.08999 * 109.66379 * 174.54603 * 9 8 7 40 40 H 1.08993 * 109.88304 * 300.43927 * 16 15 13 41 41 H 1.09001 * 109.87941 * 61.45090 * 16 15 13 42 42 H 1.09012 * 110.71731 * 140.55629 * 17 16 15 43 43 H 1.09000 * 110.72183 * 263.82879 * 17 16 15 44 44 H 0.96700 * 114.00212 * 179.97438 * 19 18 17 45 45 H 0.97000 * 119.99879 * 179.97438 * 23 22 20 46 46 H 1.09008 * 110.37026 * 274.74576 * 28 15 13 47 47 H 1.08999 * 110.37107 * 37.06851 * 28 15 13 48 48 H 1.09006 * 109.58859 * 173.64763 * 29 10 9 49 49 H 1.09005 * 109.58338 * 293.92198 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7214 1.2491 6 1 1.6779 -1.7494 1.2490 7 6 3.5705 -0.7182 1.2517 8 6 4.0818 -1.4680 2.4839 9 6 3.5950 -0.7497 3.7517 10 7 2.1327 -0.6247 3.6856 11 6 1.3590 -1.0699 4.6955 12 8 0.1613 -0.8761 4.6733 13 6 1.9763 -1.8022 5.8429 14 8 3.1833 -1.8982 5.9224 15 7 1.1923 -2.3559 6.7891 16 6 -0.2771 -2.3158 6.8155 17 6 -0.7326 -3.0547 8.0915 18 6 0.5203 -2.9783 9.0034 19 8 0.5806 -1.7249 9.6871 20 6 0.5480 -4.1252 9.9805 21 1 -0.2028 -4.8996 9.9257 22 6 1.5319 -4.1859 10.9446 23 7 2.5043 -3.3005 10.9485 24 14 1.4837 -5.5260 12.2450 25 1 2.3317 -6.6659 11.8129 26 1 1.9963 -4.9871 13.5304 27 1 0.0848 -5.9904 12.4258 28 6 1.6660 -3.1075 7.9654 29 6 1.5299 0.0003 2.5004 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7209 -1.5952 -1.2330 34 1 3.9361 -1.2095 0.3500 35 1 3.9314 0.3100 1.2768 36 1 3.7009 -2.4892 2.4724 37 1 5.1716 -1.4860 2.4727 38 1 4.0443 0.2417 3.8086 39 1 3.8728 -1.3301 4.6316 40 1 -0.6192 -1.2813 6.8440 41 1 -0.6774 -2.8143 5.9327 42 1 -1.5772 -2.5426 8.5529 43 1 -0.9842 -4.0914 7.8678 44 1 1.3469 -1.6310 10.2695 45 1 3.1962 -3.3430 11.6269 46 1 1.8302 -4.1536 7.7064 47 1 2.5823 -2.6641 8.3553 48 1 0.4445 -0.0849 2.5544 49 1 1.8121 1.0523 2.4587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:12 Heat of formation + Delta-G solvation = -153.745110 kcal Electronic energy + Delta-G solvation = -31332.150045 eV Core-core repulsion = 27066.687803 eV Total energy + Delta-G solvation = -4265.462241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84588 -39.32526 -38.18760 -37.43356 -36.62221 -34.42352 -32.99263 -32.24342 -32.18024 -30.32991 -29.30828 -28.02282 -26.64941 -25.25037 -24.41648 -23.30901 -21.84323 -21.71397 -20.41952 -19.69052 -18.95640 -17.35168 -17.17707 -16.80875 -16.43940 -16.03970 -15.71710 -15.62394 -15.10968 -14.75924 -14.52632 -14.34076 -14.26157 -14.09619 -14.07825 -13.28266 -13.18321 -13.00090 -12.91115 -12.80179 -12.59209 -12.31076 -12.07326 -11.84936 -11.68041 -11.60529 -11.51229 -11.23519 -11.12391 -11.09527 -10.86410 -10.75298 -10.62101 -10.53943 -10.36824 -10.22170 -10.14312 -9.45998 -8.78776 -8.77185 -8.70493 -8.43491 -7.97032 -6.36192 -4.44944 1.71916 2.51698 3.16227 3.24861 3.28278 3.49759 3.69895 3.96227 4.20950 4.31138 4.44487 4.54799 4.63288 4.89982 4.91063 4.91773 4.97283 5.07994 5.16042 5.39564 5.43488 5.44724 5.48444 5.56359 5.65243 5.73574 5.74875 5.82752 5.84894 5.87668 5.92812 5.99402 6.12457 6.19481 6.28544 6.38893 6.45505 6.67897 6.76047 6.85620 7.11692 7.18445 7.24324 7.27987 7.68096 7.74984 7.92545 8.03815 8.37697 8.58337 9.25466 9.41332 10.71106 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.002566 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.444108 B =10907.958315 C =11470.628186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.110 3.890 3 H 0.099 0.901 4 O -0.561 6.561 5 C -0.133 4.133 6 H 0.077 0.923 7 C -0.112 4.112 8 C -0.131 4.131 9 C 0.041 3.959 10 N -0.584 5.584 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.511 3.489 14 O -0.526 6.526 15 N -0.567 5.567 16 C 0.110 3.890 17 C -0.122 4.122 18 C 0.250 3.750 19 O -0.582 6.582 20 C -0.537 4.537 21 H 0.069 0.931 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.906 3.094 25 H -0.279 1.279 26 H -0.283 1.283 27 H -0.271 1.271 28 C 0.087 3.913 29 C 0.113 3.887 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.374 0.626 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.167 0.833 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.387 0.613 45 H 0.272 0.728 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 4.590 -18.593 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.051 3.949 3 H 0.117 0.883 4 O -0.366 6.366 5 C -0.152 4.152 6 H 0.095 0.905 7 C -0.149 4.149 8 C -0.169 4.169 9 C -0.080 4.080 10 N -0.318 5.318 11 C 0.294 3.706 12 O -0.396 6.396 13 C 0.295 3.705 14 O -0.408 6.408 15 N -0.298 5.298 16 C -0.012 4.012 17 C -0.160 4.160 18 C 0.209 3.791 19 O -0.392 6.392 20 C -0.575 4.575 21 H 0.087 0.913 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.733 3.267 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.034 4.034 29 C -0.010 4.010 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.221 0.779 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.183 0.817 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.240 0.760 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.290 5.413 -18.920 19.681 hybrid contribution 0.384 -1.207 0.956 1.587 sum 0.094 4.206 -17.964 18.450 Atomic orbital electron populations 1.22587 0.96238 1.02899 1.03042 1.21862 0.92875 0.96495 0.83677 0.88267 1.86580 1.77262 1.29152 1.43612 1.22260 0.97347 1.00787 0.94836 0.90470 1.21537 0.93818 1.01069 0.98521 1.21964 1.00958 0.99669 0.94344 1.23564 0.77694 1.02893 1.03828 1.47909 1.08162 1.58227 1.17490 1.20280 0.86621 0.79944 0.83718 1.90712 1.14541 1.56499 1.77859 1.19625 0.86479 0.80975 0.83459 1.90184 1.13631 1.61600 1.75344 1.48674 1.08392 1.49705 1.22990 1.22181 0.78858 1.01595 0.98595 1.22731 0.99579 0.99861 0.93820 1.19622 0.87748 0.83857 0.87849 1.86087 1.52488 1.37253 1.63400 1.21516 1.13050 1.08390 1.14518 0.91278 1.25089 0.94211 0.96303 0.97611 1.69530 1.12604 1.36070 1.35304 0.86351 0.78517 0.81196 0.80630 1.20483 1.20874 1.19583 1.23660 1.02028 0.94479 0.83217 1.21686 0.99763 0.96199 0.83306 0.91022 0.91728 0.92148 0.77854 0.91148 0.91884 0.91769 0.90645 0.91987 0.81727 0.90809 0.91920 0.90384 0.90438 0.76030 0.91789 0.91247 0.89511 0.88644 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 9.19 37.16 0.34 -1.00 16 2 C 0.11 0.84 3.17 -26.73 -0.08 0.76 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 4 O -0.56 -4.57 12.65 -35.23 -0.45 -5.02 16 5 C -0.13 -1.17 2.11 -90.50 -0.19 -1.36 16 6 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.11 -1.00 5.04 -26.69 -0.13 -1.14 16 8 C -0.13 -1.36 6.10 -26.39 -0.16 -1.52 16 9 C 0.04 0.52 6.31 -3.49 -0.02 0.50 16 10 N -0.58 -8.09 2.97 -173.01 -0.51 -8.60 16 11 C 0.51 8.74 7.71 -11.58 -0.09 8.65 16 12 O -0.52 -9.47 13.59 5.50 0.07 -9.39 16 13 C 0.51 9.97 7.84 -11.58 -0.09 9.87 16 14 O -0.53 -10.69 13.27 5.50 0.07 -10.62 16 15 N -0.57 -11.68 3.32 -170.89 -0.57 -12.25 16 16 C 0.11 2.09 5.50 -3.07 -0.02 2.07 16 17 C -0.12 -2.43 6.13 -24.90 -0.15 -2.59 16 18 C 0.25 5.93 0.90 -89.50 -0.08 5.85 16 19 O -0.58 -14.77 13.18 -35.23 -0.46 -15.23 16 20 C -0.54 -13.52 8.24 -34.44 -0.28 -13.81 16 21 H 0.07 1.70 7.75 -52.49 -0.41 1.29 16 22 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 23 N -0.90 -23.09 10.81 55.43 0.60 -22.49 16 24 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 C 0.09 1.99 5.75 -2.41 -0.01 1.98 16 29 C 0.11 1.23 5.17 -3.71 -0.02 1.21 16 30 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.37 1.92 9.04 45.56 0.41 2.33 16 34 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.17 2.59 3.70 -57.20 -0.21 2.38 16 40 H 0.07 1.43 7.45 -51.93 -0.39 1.05 16 41 H 0.06 1.08 7.82 -51.93 -0.41 0.68 16 42 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 43 H 0.08 1.43 7.99 -51.93 -0.42 1.02 16 44 H 0.39 10.11 6.77 45.56 0.31 10.41 16 45 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.07 1.59 8.04 -51.92 -0.42 1.17 16 47 H 0.09 2.20 7.77 -51.93 -0.40 1.80 16 48 H 0.10 1.10 5.65 -51.93 -0.29 0.81 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -28.25 381.01 -7.94 -36.19 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.32 Total: 15.74 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.09 Total: 11.17 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.48 Total: -43.34 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.76 Total: -40.26 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.25 -7.94 -36.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.557 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds