Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47171 * 2 1 4 4 O 1.42902 * 109.46922 * 240.00317 * 2 1 3 5 5 C 1.52998 * 109.47273 * 120.00739 * 2 1 3 6 6 H 1.08996 * 109.49435 * 305.06033 * 5 2 1 7 7 C 1.53039 * 109.49759 * 185.00196 * 5 2 1 8 8 C 1.53038 * 109.54183 * 178.68155 * 7 5 2 9 9 C 1.53197 * 109.31352 * 61.35993 * 8 7 5 10 10 N 1.46932 * 108.77301 * 305.37011 * 9 8 7 11 11 C 1.34779 * 120.62543 * 233.58142 * 10 9 8 12 12 O 1.21347 * 119.99736 * 187.03583 * 11 10 9 13 13 C 1.49453 * 120.00263 * 7.03541 * 11 10 9 14 14 O 1.21347 * 119.99856 * 6.46622 * 13 11 10 15 15 N 1.34766 * 119.99782 * 186.46208 * 13 11 10 16 16 C 1.47025 * 125.65450 * 359.96170 * 15 13 11 17 17 C 1.54322 * 107.27367 * 178.97410 * 16 15 13 18 18 C 1.55154 * 102.94227 * 337.80822 * 17 16 15 19 19 O 1.42902 * 111.00338 * 277.42720 * 18 17 16 20 20 C 1.50700 * 111.00419 * 153.57776 * 18 17 16 21 21 H 1.07996 * 119.99592 * 6.34954 * 20 18 17 22 22 C 1.37877 * 120.00167 * 186.34484 * 20 18 17 23 23 N 1.31519 * 119.99565 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00220 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47040 * 90.00249 * 24 22 20 26 26 H 1.48502 * 109.47011 * 210.00527 * 24 22 20 27 27 H 1.48504 * 109.46693 * 330.00132 * 24 22 20 28 28 C 1.47432 * 125.64694 * 179.97438 * 15 13 11 29 29 C 1.46921 * 118.74027 * 53.86065 * 10 9 8 30 30 H 1.09000 * 109.46658 * 299.99325 * 1 2 3 31 31 H 1.08999 * 109.47675 * 59.99696 * 1 2 3 32 32 H 1.09005 * 109.46798 * 179.97438 * 1 2 3 33 33 H 0.96700 * 113.99812 * 299.99939 * 4 2 1 34 34 H 1.09001 * 109.46462 * 58.65517 * 7 5 2 35 35 H 1.09004 * 109.44738 * 298.69413 * 7 5 2 36 36 H 1.08996 * 109.49377 * 301.41102 * 8 7 5 37 37 H 1.08996 * 109.52597 * 181.32993 * 8 7 5 38 38 H 1.09000 * 109.58516 * 185.58160 * 9 8 7 39 39 H 1.09001 * 109.70147 * 65.22665 * 9 8 7 40 40 H 1.09001 * 109.88196 * 59.55326 * 16 15 13 41 41 H 1.08997 * 110.00631 * 298.46781 * 16 15 13 42 42 H 1.08996 * 110.71741 * 219.44161 * 17 16 15 43 43 H 1.09003 * 110.71989 * 96.17258 * 17 16 15 44 44 H 0.96698 * 114.00311 * 173.65594 * 19 18 17 45 45 H 0.97003 * 119.99406 * 179.97438 * 23 22 20 46 46 H 1.09004 * 110.36138 * 85.25702 * 28 15 13 47 47 H 1.08998 * 110.36812 * 322.93421 * 28 15 13 48 48 H 1.09005 * 109.58892 * 65.92185 * 29 10 9 49 49 H 1.09002 * 109.58840 * 186.35251 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2491 6 1 1.6048 -0.2630 2.1371 7 6 3.5652 -0.6137 1.3142 8 6 4.0738 -1.3067 2.5804 9 6 3.6954 -2.7904 2.5328 10 7 2.2452 -2.9021 2.3246 11 6 1.4859 -3.6366 3.1617 12 8 0.3143 -3.8264 2.9092 13 6 2.0870 -4.2171 4.4007 14 8 3.2239 -3.9320 4.7146 15 7 1.3662 -5.0572 5.1694 16 6 -0.0160 -5.4849 4.9084 17 6 -0.4140 -6.4616 6.0350 18 6 0.9568 -6.9685 6.5558 19 8 1.4547 -8.0297 5.7385 20 6 0.8617 -7.3986 7.9970 21 1 -0.0988 -7.4253 8.4902 22 6 2.0006 -7.7582 8.6858 23 7 3.1702 -7.7253 8.0852 24 14 1.8827 -8.2907 10.4724 25 1 1.6786 -9.7601 10.5385 26 1 3.1387 -7.9331 11.1794 27 1 0.7372 -7.6020 11.1195 28 6 1.8331 -5.6995 6.4116 29 6 1.6394 -2.2030 1.1832 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7209 -1.5952 -1.2330 34 1 3.8547 0.4370 1.3340 35 1 4.0007 -1.0937 0.4377 36 1 3.6194 -0.8433 3.4561 37 1 5.1578 -1.2094 2.6385 38 1 3.9672 -3.2672 3.4745 39 1 4.2210 -3.2775 1.7115 40 1 -0.0721 -5.9891 3.9436 41 1 -0.6810 -4.6213 4.9143 42 1 -1.0052 -7.2871 5.6387 43 1 -0.9572 -5.9404 6.8233 44 1 2.3508 -8.3137 5.9653 45 1 3.9715 -7.9779 8.5699 46 1 1.6812 -5.0352 7.2624 47 1 2.8848 -5.9725 6.3254 48 1 2.0009 -2.6410 0.2527 49 1 0.5542 -2.2921 1.2341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = -153.562501 kcal Electronic energy + Delta-G solvation = -31474.517958 eV Core-core repulsion = 27209.063636 eV Total energy + Delta-G solvation = -4265.454323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87648 -39.41522 -38.20721 -37.43128 -36.51353 -34.36762 -32.99271 -32.29066 -31.98968 -30.31696 -29.53679 -27.97217 -26.72673 -25.33073 -24.45670 -23.37732 -21.87829 -21.64758 -20.13346 -19.70969 -18.95404 -17.28852 -17.25792 -16.81891 -16.47254 -16.02255 -15.78502 -15.53490 -15.14248 -14.78879 -14.58710 -14.45763 -14.23847 -14.13757 -13.97610 -13.33612 -13.18867 -12.96287 -12.89063 -12.70948 -12.51986 -12.32322 -12.26977 -11.75903 -11.70330 -11.54474 -11.46122 -11.24938 -11.09633 -11.08031 -10.93004 -10.75415 -10.62673 -10.50580 -10.42012 -10.25040 -10.12569 -9.40960 -8.82924 -8.77712 -8.66410 -8.45159 -7.97779 -6.33755 -4.43188 1.70789 2.51197 3.17925 3.25734 3.28078 3.49701 3.69105 4.01498 4.22209 4.28352 4.46763 4.53391 4.58186 4.87558 4.90107 4.94086 4.97402 5.09613 5.13618 5.37926 5.42473 5.43367 5.51708 5.60337 5.63270 5.73838 5.74574 5.78517 5.83268 5.86279 5.89577 5.99732 6.12177 6.22316 6.26125 6.38977 6.46767 6.68333 6.77601 6.85238 7.11496 7.17615 7.26022 7.28635 7.68314 7.74881 7.96202 8.03020 8.37873 8.61114 9.23813 9.32436 10.73466 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.002639 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.486967 B =10607.494461 C =11224.595489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.111 3.889 3 H 0.101 0.899 4 O -0.562 6.562 5 C -0.134 4.134 6 H 0.083 0.917 7 C -0.112 4.112 8 C -0.129 4.129 9 C 0.046 3.954 10 N -0.583 5.583 11 C 0.512 3.488 12 O -0.521 6.521 13 C 0.511 3.489 14 O -0.526 6.526 15 N -0.569 5.569 16 C 0.110 3.890 17 C -0.121 4.121 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.090 3.910 29 C 0.109 3.891 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.373 0.627 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.163 0.837 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.381 0.619 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 13.283 -13.269 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.051 3.949 3 H 0.119 0.881 4 O -0.369 6.369 5 C -0.154 4.154 6 H 0.102 0.898 7 C -0.150 4.150 8 C -0.167 4.167 9 C -0.075 4.075 10 N -0.317 5.317 11 C 0.295 3.705 12 O -0.396 6.396 13 C 0.294 3.706 14 O -0.407 6.407 15 N -0.299 5.299 16 C -0.013 4.013 17 C -0.159 4.159 18 C 0.208 3.792 19 O -0.389 6.389 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.030 4.030 29 C -0.013 4.013 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.222 0.778 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.178 0.822 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.231 0.769 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.087 0.913 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.449 13.959 -13.621 19.557 hybrid contribution 0.342 -0.664 1.258 1.463 sum -1.107 13.295 -12.363 18.188 Atomic orbital electron populations 1.22571 0.96286 1.03052 1.02856 1.21903 0.92858 0.96400 0.83708 0.88118 1.86577 1.77197 1.29222 1.43858 1.22318 0.97634 0.95891 0.99545 0.89833 1.21550 0.93962 1.00836 0.98624 1.21850 1.01270 0.95687 0.97936 1.23321 0.78176 0.97762 1.08205 1.47857 1.09237 1.47933 1.26689 1.20311 0.86304 0.79523 0.84381 1.90708 1.16332 1.58279 1.74325 1.19595 0.85721 0.80794 0.84498 1.90249 1.17688 1.61017 1.71749 1.48716 1.15189 1.41139 1.24882 1.22170 0.81513 0.97995 0.99573 1.22717 0.98842 0.97652 0.96724 1.19637 0.87368 0.82903 0.89298 1.86135 1.36825 1.54979 1.61010 1.21455 0.94316 1.46327 0.95391 0.91366 1.25088 0.95120 0.93946 0.99093 1.69708 0.98419 1.47423 1.37655 0.86383 0.77710 0.79064 0.83648 1.20357 1.21003 1.19678 1.23537 1.02260 0.95334 0.81876 1.21794 0.99943 0.90951 0.88636 0.91401 0.91715 0.91850 0.77833 0.91852 0.91189 0.91639 0.90620 0.82163 0.92131 0.91325 0.91441 0.90473 0.90277 0.76927 0.91945 0.91283 0.88931 0.91339 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 9.30 37.16 0.35 -1.00 16 2 C 0.11 0.85 3.34 -26.73 -0.09 0.77 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 4 O -0.56 -4.81 12.80 -35.23 -0.45 -5.26 16 5 C -0.13 -1.20 2.18 -90.28 -0.20 -1.40 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.11 -1.01 5.05 -26.69 -0.13 -1.15 16 8 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 9 C 0.05 0.59 6.27 -3.71 -0.02 0.57 16 10 N -0.58 -8.01 2.97 -173.00 -0.51 -8.52 16 11 C 0.51 8.69 7.70 -11.58 -0.09 8.60 16 12 O -0.52 -9.36 13.62 5.50 0.07 -9.29 16 13 C 0.51 9.94 7.81 -11.59 -0.09 9.85 16 14 O -0.53 -10.70 13.36 5.50 0.07 -10.63 16 15 N -0.57 -11.70 3.33 -171.04 -0.57 -12.26 16 16 C 0.11 2.08 5.49 -3.06 -0.02 2.07 16 17 C -0.12 -2.42 6.13 -24.90 -0.15 -2.57 16 18 C 0.25 5.85 0.87 -89.64 -0.08 5.78 16 19 O -0.58 -14.43 13.16 -35.23 -0.46 -14.89 16 20 C -0.54 -13.56 8.27 -34.44 -0.28 -13.84 16 21 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 22 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 23 N -0.89 -22.97 10.69 55.43 0.59 -22.38 16 24 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 C 0.09 2.08 5.38 -2.54 -0.01 2.07 16 29 C 0.11 1.15 5.04 -3.49 -0.02 1.14 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 33 H 0.37 2.34 7.07 45.56 0.32 2.66 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.16 2.53 3.78 -56.76 -0.21 2.32 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.31 7.73 -51.93 -0.40 0.91 16 41 H 0.07 1.18 7.56 -51.93 -0.39 0.79 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 44 H 0.38 9.62 7.57 45.56 0.34 9.96 16 45 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 46 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 47 H 0.09 2.34 7.33 -51.93 -0.38 1.96 16 48 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 49 H 0.09 1.07 5.78 -51.93 -0.30 0.77 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -28.03 378.27 -7.97 -36.00 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -6.30 Total: 15.67 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -1.10 Total: 11.04 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.49 Total: -43.17 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.77 Total: -40.06 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.03 -7.97 -36.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.565 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds