Wall clock time and date at job start Sat Apr 11 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47171 * 2 1 4 4 O 1.42902 * 109.46922 * 240.00317 * 2 1 3 5 5 C 1.52998 * 109.47273 * 120.00739 * 2 1 3 6 6 H 1.08996 * 109.49435 * 305.06033 * 5 2 1 7 7 C 1.53039 * 109.49759 * 185.00196 * 5 2 1 8 8 C 1.53038 * 109.54183 * 178.68155 * 7 5 2 9 9 C 1.53197 * 109.31352 * 61.35993 * 8 7 5 10 10 N 1.46932 * 108.77301 * 305.37011 * 9 8 7 11 11 C 1.34779 * 120.62543 * 233.58142 * 10 9 8 12 12 O 1.21347 * 119.99736 * 187.03583 * 11 10 9 13 13 C 1.49453 * 120.00263 * 7.03541 * 11 10 9 14 14 O 1.21347 * 119.99856 * 6.46622 * 13 11 10 15 15 N 1.34766 * 119.99782 * 186.46208 * 13 11 10 16 16 C 1.47025 * 125.65450 * 359.96170 * 15 13 11 17 17 C 1.54322 * 107.27367 * 178.97410 * 16 15 13 18 18 C 1.55154 * 102.94227 * 337.80822 * 17 16 15 19 19 O 1.42902 * 111.00338 * 277.42720 * 18 17 16 20 20 C 1.50700 * 111.00419 * 153.57776 * 18 17 16 21 21 H 1.07996 * 119.99592 * 6.34954 * 20 18 17 22 22 C 1.37877 * 120.00167 * 186.34484 * 20 18 17 23 23 N 1.31519 * 119.99565 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00220 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47040 * 90.00249 * 24 22 20 26 26 H 1.48502 * 109.47011 * 210.00527 * 24 22 20 27 27 H 1.48504 * 109.46693 * 330.00132 * 24 22 20 28 28 C 1.47432 * 125.64694 * 179.97438 * 15 13 11 29 29 C 1.46921 * 118.74027 * 53.86065 * 10 9 8 30 30 H 1.09000 * 109.46658 * 299.99325 * 1 2 3 31 31 H 1.08999 * 109.47675 * 59.99696 * 1 2 3 32 32 H 1.09005 * 109.46798 * 179.97438 * 1 2 3 33 33 H 0.96700 * 113.99812 * 299.99939 * 4 2 1 34 34 H 1.09001 * 109.46462 * 58.65517 * 7 5 2 35 35 H 1.09004 * 109.44738 * 298.69413 * 7 5 2 36 36 H 1.08996 * 109.49377 * 301.41102 * 8 7 5 37 37 H 1.08996 * 109.52597 * 181.32993 * 8 7 5 38 38 H 1.09000 * 109.58516 * 185.58160 * 9 8 7 39 39 H 1.09001 * 109.70147 * 65.22665 * 9 8 7 40 40 H 1.09001 * 109.88196 * 59.55326 * 16 15 13 41 41 H 1.08997 * 110.00631 * 298.46781 * 16 15 13 42 42 H 1.08996 * 110.71741 * 219.44161 * 17 16 15 43 43 H 1.09003 * 110.71989 * 96.17258 * 17 16 15 44 44 H 0.96698 * 114.00311 * 173.65594 * 19 18 17 45 45 H 0.97003 * 119.99406 * 179.97438 * 23 22 20 46 46 H 1.09004 * 110.36138 * 85.25702 * 28 15 13 47 47 H 1.08998 * 110.36812 * 322.93421 * 28 15 13 48 48 H 1.09005 * 109.58892 * 65.92185 * 29 10 9 49 49 H 1.09002 * 109.58840 * 186.35251 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2491 6 1 1.6048 -0.2630 2.1371 7 6 3.5652 -0.6137 1.3142 8 6 4.0738 -1.3067 2.5804 9 6 3.6954 -2.7904 2.5328 10 7 2.2452 -2.9021 2.3246 11 6 1.4859 -3.6366 3.1617 12 8 0.3143 -3.8264 2.9092 13 6 2.0870 -4.2171 4.4007 14 8 3.2239 -3.9320 4.7146 15 7 1.3662 -5.0572 5.1694 16 6 -0.0160 -5.4849 4.9084 17 6 -0.4140 -6.4616 6.0350 18 6 0.9568 -6.9685 6.5558 19 8 1.4547 -8.0297 5.7385 20 6 0.8617 -7.3986 7.9970 21 1 -0.0988 -7.4253 8.4902 22 6 2.0006 -7.7582 8.6858 23 7 3.1702 -7.7253 8.0852 24 14 1.8827 -8.2907 10.4724 25 1 1.6786 -9.7601 10.5385 26 1 3.1387 -7.9331 11.1794 27 1 0.7372 -7.6020 11.1195 28 6 1.8331 -5.6995 6.4116 29 6 1.6394 -2.2030 1.1832 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7209 -1.5952 -1.2330 34 1 3.8547 0.4370 1.3340 35 1 4.0007 -1.0937 0.4377 36 1 3.6194 -0.8433 3.4561 37 1 5.1578 -1.2094 2.6385 38 1 3.9672 -3.2672 3.4745 39 1 4.2210 -3.2775 1.7115 40 1 -0.0721 -5.9891 3.9436 41 1 -0.6810 -4.6213 4.9143 42 1 -1.0052 -7.2871 5.6387 43 1 -0.9572 -5.9404 6.8233 44 1 2.3508 -8.3137 5.9653 45 1 3.9715 -7.9779 8.5699 46 1 1.6812 -5.0352 7.2624 47 1 2.8848 -5.9725 6.3254 48 1 2.0009 -2.6410 0.2527 49 1 0.5542 -2.2921 1.2341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326215369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:17 Heat of formation + Delta-G solvation = -174.729345 kcal Electronic energy + Delta-G solvation = -31475.435822 eV Core-core repulsion = 27209.063636 eV Total energy + Delta-G solvation = -4266.372186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17452 -40.60988 -39.44035 -38.99959 -37.51076 -36.08792 -34.24452 -33.94648 -32.79221 -31.99359 -30.29620 -29.69354 -28.10757 -26.86893 -25.27242 -24.86338 -23.24964 -22.44550 -21.55006 -21.05831 -20.21842 -19.13174 -18.43004 -18.23561 -17.40832 -17.18288 -17.12903 -16.99207 -16.69915 -16.25843 -15.89745 -15.39406 -15.30418 -15.00696 -14.97488 -14.87712 -14.69212 -14.67627 -14.06883 -14.01598 -13.65787 -13.51784 -13.34729 -13.24716 -12.92770 -12.84607 -12.69779 -12.60799 -12.38120 -12.36849 -12.23837 -12.12943 -11.93800 -11.87480 -11.70739 -11.46563 -11.19364 -10.84966 -10.67279 -10.38141 -10.10676 -9.84479 -9.62603 -8.25516 -6.41990 0.27723 1.19280 1.43882 1.46299 1.55222 2.05201 2.31012 2.41128 3.00149 3.07184 3.42594 3.58419 3.74407 3.78684 3.83903 4.02953 4.05269 4.13565 4.16762 4.21750 4.29990 4.31605 4.42491 4.53948 4.62707 4.65083 4.71137 4.80586 4.86279 4.90273 4.92507 4.99578 5.04094 5.05627 5.09257 5.15766 5.20241 5.31805 5.33052 5.41857 5.42124 5.44849 5.74208 5.95142 6.04734 6.28435 6.59469 6.67588 6.77559 6.88010 7.26524 7.34766 8.80078 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.002639 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.486967 B =10607.494461 C =11224.595489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.118 3.882 3 H 0.109 0.891 4 O -0.573 6.573 5 C -0.127 4.127 6 H 0.076 0.924 7 C -0.107 4.107 8 C -0.124 4.124 9 C 0.043 3.957 10 N -0.573 5.573 11 C 0.513 3.487 12 O -0.534 6.534 13 C 0.503 3.497 14 O -0.541 6.541 15 N -0.579 5.579 16 C 0.119 3.881 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.555 4.555 21 H 0.069 0.931 22 C 0.029 3.971 23 N -0.913 5.913 24 Si 0.964 3.036 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.266 1.266 28 C 0.106 3.894 29 C 0.105 3.895 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.382 0.618 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.374 0.626 45 H 0.270 0.730 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 14.625 -14.447 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.059 3.941 3 H 0.127 0.873 4 O -0.381 6.381 5 C -0.146 4.146 6 H 0.095 0.905 7 C -0.144 4.144 8 C -0.162 4.162 9 C -0.077 4.077 10 N -0.305 5.305 11 C 0.295 3.705 12 O -0.411 6.411 13 C 0.288 3.712 14 O -0.422 6.422 15 N -0.310 5.310 16 C -0.003 4.003 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.593 4.593 21 H 0.087 0.913 22 C -0.172 4.172 23 N -0.552 5.552 24 Si 0.789 3.211 25 H -0.202 1.202 26 H -0.210 1.210 27 H -0.191 1.191 28 C -0.016 4.016 29 C -0.016 4.016 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.223 0.777 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.993 15.328 -14.838 21.426 hybrid contribution 0.590 -1.050 1.564 1.974 sum -1.403 14.278 -13.274 19.545 Atomic orbital electron populations 1.22549 0.95846 1.02992 1.03180 1.21859 0.93110 0.96435 0.82688 0.87341 1.86566 1.77415 1.30087 1.43998 1.22270 0.97682 0.94579 1.00113 0.90512 1.21521 0.93762 1.01519 0.97612 1.21810 1.02146 0.93810 0.98422 1.23251 0.77752 0.99500 1.07241 1.47950 1.09467 1.46609 1.26514 1.19803 0.86302 0.80333 0.84076 1.90696 1.16595 1.59246 1.74570 1.20241 0.85537 0.80244 0.85219 1.90297 1.18307 1.61249 1.72385 1.48750 1.15947 1.41814 1.24488 1.22155 0.80888 0.98326 0.98951 1.22722 0.97034 0.98140 0.97392 1.19851 0.89295 0.82571 0.88970 1.86127 1.36403 1.55610 1.61370 1.21741 0.94471 1.46680 0.96429 0.91283 1.25789 0.94870 0.93996 1.02571 1.69814 0.98799 1.47782 1.38794 0.85461 0.77640 0.78527 0.79440 1.20222 1.21013 1.19069 1.23074 1.00418 0.95267 0.82796 1.22069 0.99662 0.91871 0.87960 0.91242 0.91251 0.92112 0.76780 0.90395 0.90781 0.92896 0.89232 0.85001 0.90510 0.91431 0.89714 0.89646 0.88950 0.77673 0.92024 0.92524 0.91969 0.89191 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 9.30 71.98 0.67 -1.57 16 2 C 0.12 1.51 3.34 30.59 0.10 1.61 16 3 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 4 O -0.57 -8.13 12.80 -148.98 -1.91 -10.04 16 5 C -0.13 -1.97 2.18 -10.57 -0.02 -1.99 16 6 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.11 -1.63 5.05 30.62 0.15 -1.48 16 8 C -0.12 -2.40 6.08 30.67 0.19 -2.22 16 9 C 0.04 1.07 6.27 86.36 0.54 1.61 16 10 N -0.57 -15.06 2.97 -819.62 -2.43 -17.49 16 11 C 0.51 17.17 7.70 87.27 0.67 17.84 16 12 O -0.53 -18.68 13.62 -3.24 -0.04 -18.72 16 13 C 0.50 19.88 7.81 87.27 0.68 20.56 16 14 O -0.54 -22.68 13.36 -3.24 -0.04 -22.72 16 15 N -0.58 -24.16 3.33 -813.41 -2.71 -26.86 16 16 C 0.12 4.43 5.49 86.73 0.48 4.90 16 17 C -0.12 -4.52 6.13 31.78 0.19 -4.33 16 18 C 0.23 11.15 0.87 -10.16 -0.01 11.14 16 19 O -0.59 -29.78 13.16 -148.98 -1.96 -31.74 16 20 C -0.56 -28.25 8.27 25.60 0.21 -28.03 16 21 H 0.07 3.42 7.79 -2.91 -0.02 3.39 16 22 C 0.03 1.48 5.29 84.65 0.45 1.92 16 23 N -0.91 -48.00 10.69 21.45 0.23 -47.77 16 24 Si 0.96 40.78 29.54 68.60 2.03 42.80 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 C 0.11 5.05 5.38 86.84 0.47 5.51 16 29 C 0.11 2.01 5.04 86.51 0.44 2.44 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.76 6.70 -2.38 -0.02 0.74 16 33 H 0.38 3.69 7.07 -74.06 -0.52 3.17 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.13 7.86 -2.38 -0.02 1.11 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.13 4.21 3.78 -78.83 -0.30 3.91 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.53 7.73 -2.39 -0.02 2.51 16 41 H 0.08 2.87 7.56 -2.39 -0.02 2.85 16 42 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.09 3.35 8.03 -2.39 -0.02 3.33 16 44 H 0.37 19.60 7.57 -74.06 -0.56 19.04 16 45 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 46 H 0.06 2.76 8.03 -2.38 -0.02 2.74 16 47 H 0.06 3.30 7.33 -2.39 -0.02 3.28 16 48 H 0.09 1.37 6.47 -2.38 -0.02 1.35 16 49 H 0.09 1.86 5.78 -2.39 -0.01 1.85 16 Total: -1.00 -60.24 378.27 -2.01 -62.26 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.39 Total: 42.37 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 5.21 Total: 27.92 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -4.91 Total: -92.12 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -3.95 Total: -83.22 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -60.24 -2.01 -62.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.471 kcal (2) G-P(sol) polarization free energy of solvation -60.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds