Wall clock time and date at job start Sat Apr 11 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49523 * 2 1 4 4 C 1.53037 * 109.50007 * 239.93488 * 2 1 3 5 5 C 1.53110 * 109.50145 * 301.37460 * 4 2 1 6 6 H 1.09003 * 109.50899 * 58.63300 * 5 4 2 7 7 C 1.52995 * 109.48823 * 178.70032 * 5 4 2 8 8 O 1.42900 * 109.47030 * 184.85690 * 7 5 4 9 9 C 1.53190 * 109.33059 * 298.66243 * 5 4 2 10 10 N 1.46917 * 108.77931 * 54.63371 * 9 5 4 11 11 C 1.34779 * 120.63075 * 126.36761 * 10 9 5 12 12 O 1.21357 * 119.99829 * 177.56716 * 11 10 9 13 13 C 1.49444 * 120.00049 * 357.57018 * 11 10 9 14 14 O 1.21343 * 120.00287 * 6.89973 * 13 11 10 15 15 N 1.34784 * 120.00042 * 186.89841 * 13 11 10 16 16 C 1.47431 * 125.64434 * 359.69208 * 15 13 11 17 17 C 1.55130 * 104.71890 * 155.81412 * 16 15 13 18 18 C 1.55163 * 101.48422 * 37.29587 * 17 16 15 19 19 O 1.42899 * 110.87368 * 82.76675 * 18 17 16 20 20 C 1.50701 * 110.71805 * 205.96754 * 18 17 16 21 21 H 1.07996 * 120.00338 * 354.97274 * 20 18 17 22 22 C 1.37881 * 119.99929 * 174.97705 * 20 18 17 23 23 N 1.31515 * 120.00060 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 119.99931 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47466 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46875 * 119.99923 * 24 22 20 27 27 H 1.48503 * 109.47367 * 239.99677 * 24 22 20 28 28 C 1.47017 * 125.65124 * 179.97438 * 15 13 11 29 29 C 1.46930 * 118.73861 * 306.39293 * 10 9 5 30 30 H 1.09006 * 109.47607 * 300.00227 * 1 2 3 31 31 H 1.09005 * 109.46656 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47262 * 60.00924 * 1 2 3 33 33 H 1.08997 * 109.46434 * 61.42859 * 4 2 1 34 34 H 1.09005 * 109.45872 * 181.39137 * 4 2 1 35 35 H 1.09002 * 109.47378 * 304.85518 * 7 5 4 36 36 H 1.08995 * 109.47082 * 64.86094 * 7 5 4 37 37 H 0.96698 * 113.99923 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.58644 * 294.83867 * 9 5 4 39 39 H 1.09006 * 109.58477 * 174.42254 * 9 5 4 40 40 H 1.08994 * 110.36746 * 274.74043 * 16 15 13 41 41 H 1.08999 * 110.36530 * 37.06978 * 16 15 13 42 42 H 1.08997 * 111.19649 * 279.19511 * 17 16 15 43 43 H 1.08997 * 110.93912 * 155.28369 * 17 16 15 44 44 H 0.96699 * 114.00109 * 184.94018 * 19 18 17 45 45 H 0.96996 * 120.00246 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88572 * 300.44829 * 28 15 13 47 47 H 1.09005 * 109.87998 * 61.60950 * 28 15 13 48 48 H 1.09002 * 109.58042 * 293.81866 * 29 10 9 49 49 H 1.09006 * 109.58792 * 173.39739 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5031 -2.1562 -1.2652 6 1 0.4133 -2.1364 -1.2536 7 6 1.9875 -2.8683 -2.5298 8 8 1.3948 -4.1666 -2.6020 9 6 2.0141 -2.9039 -0.0297 10 7 1.6516 -2.1377 1.1703 11 6 0.9740 -2.7211 2.1788 12 8 0.7190 -2.0899 3.1835 13 6 0.5368 -4.1452 2.0599 14 8 0.8977 -4.8137 1.1137 15 7 -0.2583 -4.6871 3.0037 16 6 -0.7633 -3.9942 4.2031 17 6 -2.0520 -4.7658 4.5908 18 6 -1.6469 -6.2276 4.2642 19 8 -0.9028 -6.8023 5.3403 20 6 -2.8634 -7.0615 3.9546 21 1 -3.8506 -6.6365 4.0602 22 6 -2.7161 -8.3671 3.5366 23 7 -1.5140 -8.8846 3.4075 24 14 -4.2240 -9.4009 3.1536 25 1 -5.4489 -8.5913 3.3758 26 1 -4.1740 -9.8433 1.7368 27 1 -4.2479 -10.5900 4.0428 28 6 -0.7609 -6.0687 3.0108 29 6 2.0413 -0.7233 1.2498 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 -0.8900 33 1 1.6988 -0.1953 -2.1389 34 1 3.1306 -0.7440 -1.2354 35 1 1.6995 -2.2881 -3.4065 36 1 3.0727 -2.9656 -2.4989 37 1 1.6582 -4.6764 -3.3803 38 1 3.0981 -3.0042 -0.0857 39 1 1.5556 -3.8918 0.0151 40 1 -0.0304 -4.0465 5.0082 41 1 -0.9990 -2.9558 3.9702 42 1 -2.8989 -4.4498 3.9816 43 1 -2.2715 -4.6491 5.6520 44 1 -0.5622 -7.6879 5.1542 45 1 -1.4103 -9.8029 3.1131 46 1 -1.3514 -6.2530 2.1133 47 1 0.0749 -6.7669 3.0569 48 1 3.1274 -0.6458 1.2983 49 1 1.6007 -0.2723 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326229537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:23 Heat of formation + Delta-G solvation = -148.230579 kcal Electronic energy + Delta-G solvation = -31926.132741 eV Core-core repulsion = 27660.909627 eV Total energy + Delta-G solvation = -4265.223113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86706 -39.18386 -37.93297 -37.33899 -36.54838 -34.47246 -33.36016 -32.35650 -32.23438 -30.16060 -27.97434 -27.38044 -26.40212 -25.93275 -25.22035 -23.29806 -22.14121 -21.25194 -19.73186 -19.40408 -18.72881 -17.32549 -17.18651 -16.91582 -16.74806 -15.93704 -15.80713 -15.26965 -14.91814 -14.85075 -14.58327 -14.37408 -14.31097 -13.90968 -13.55062 -13.33084 -13.11381 -13.01849 -12.89911 -12.85024 -12.32136 -12.28346 -11.92418 -11.71900 -11.52112 -11.49475 -11.31568 -11.23825 -11.07451 -10.86319 -10.80414 -10.64741 -10.59705 -10.46092 -10.31045 -10.10134 -10.04909 -9.29819 -8.73572 -8.67657 -8.57887 -8.30416 -8.00595 -6.29310 -4.37691 1.80474 2.60129 3.20701 3.29567 3.33298 3.58286 3.76635 4.02789 4.27217 4.48352 4.58436 4.62183 4.73100 4.76203 4.99127 5.04514 5.26344 5.28845 5.34929 5.39762 5.42743 5.48553 5.50741 5.56822 5.67546 5.74757 5.81762 5.85975 5.89292 5.92957 6.04413 6.06009 6.20182 6.27952 6.34715 6.48698 6.54961 6.77555 6.85151 6.94127 7.20297 7.26351 7.33832 7.58049 7.72354 7.83685 8.03174 8.11928 8.47363 8.66678 9.28943 9.37795 10.78610 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003342 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.010666 B = 8375.148021 C = 9442.737161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.110 4.110 5 C -0.104 4.104 6 H 0.084 0.916 7 C 0.086 3.914 8 O -0.562 6.562 9 C 0.054 3.946 10 N -0.582 5.582 11 C 0.512 3.488 12 O -0.522 6.522 13 C 0.507 3.493 14 O -0.518 6.518 15 N -0.572 5.572 16 C 0.101 3.899 17 C -0.121 4.121 18 C 0.247 3.753 19 O -0.583 6.583 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.101 3.899 29 C 0.109 3.891 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.377 0.623 38 H 0.059 0.941 39 H 0.173 0.827 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.382 0.618 45 H 0.270 0.730 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 15.327 -10.361 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.123 4.123 6 H 0.103 0.897 7 C 0.007 3.993 8 O -0.367 6.367 9 C -0.067 4.067 10 N -0.316 5.316 11 C 0.295 3.705 12 O -0.398 6.398 13 C 0.290 3.710 14 O -0.399 6.399 15 N -0.303 5.303 16 C -0.021 4.021 17 C -0.159 4.159 18 C 0.207 3.793 19 O -0.391 6.391 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.533 5.533 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.020 4.020 29 C -0.013 4.013 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.223 0.777 38 H 0.077 0.923 39 H 0.189 0.811 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.232 0.768 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.891 15.936 -9.527 20.174 hybrid contribution -0.095 -1.164 -1.268 1.724 sum 7.796 14.772 -10.795 19.888 Atomic orbital electron populations 1.21865 0.94602 1.02523 1.01611 1.21454 0.96867 0.99213 0.94657 0.89860 1.21581 1.00517 0.94871 0.97794 1.21562 1.02238 0.94082 0.94391 0.89725 1.22085 0.96152 0.84347 0.96705 1.86627 1.72486 1.28225 1.49376 1.23419 1.00838 1.01070 0.81334 1.47914 1.54269 1.11040 1.18356 1.20284 0.78700 0.88151 0.83327 1.90691 1.54807 1.65044 1.29228 1.19648 0.80733 0.87476 0.83141 1.90260 1.56680 1.62174 1.30763 1.48729 1.44713 1.15318 1.21571 1.22647 0.96292 0.96626 0.86520 1.22864 0.95610 0.95713 1.01679 1.19522 0.88413 0.89244 0.82148 1.86127 1.73847 1.36575 1.42600 1.21550 0.92812 0.96972 1.46122 0.91374 1.25078 0.96575 0.97820 0.93800 1.69698 1.21390 1.15610 1.46639 0.86344 0.82564 0.79963 0.78024 1.19573 1.20756 1.20737 1.23244 0.98396 0.77946 1.02430 1.21747 0.99565 0.80849 0.99131 0.92501 0.92162 0.92650 0.91594 0.91643 0.93805 0.93770 0.77664 0.92296 0.81142 0.91173 0.89927 0.90434 0.90329 0.76787 0.92023 0.90784 0.90988 0.91336 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.70 37.16 0.32 -1.20 16 2 C -0.10 -0.93 3.21 -90.51 -0.29 -1.22 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.93 4.72 -26.66 -0.13 -1.06 16 5 C -0.10 -1.16 2.23 -90.47 -0.20 -1.36 16 6 H 0.08 1.11 6.34 -51.93 -0.33 0.78 16 7 C 0.09 0.83 6.43 37.15 0.24 1.06 16 8 O -0.56 -6.71 13.30 -35.23 -0.47 -7.18 16 9 C 0.05 0.75 5.36 -3.72 -0.02 0.73 16 10 N -0.58 -8.39 2.41 -173.28 -0.42 -8.81 16 11 C 0.51 9.06 7.71 -11.59 -0.09 8.97 16 12 O -0.52 -9.70 13.31 5.49 0.07 -9.62 16 13 C 0.51 10.33 7.83 -11.58 -0.09 10.24 16 14 O -0.52 -11.21 13.35 5.50 0.07 -11.14 16 15 N -0.57 -12.26 3.33 -170.89 -0.57 -12.82 16 16 C 0.10 2.00 5.97 -2.41 -0.01 1.98 16 17 C -0.12 -2.50 6.24 -24.46 -0.15 -2.65 16 18 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16 19 O -0.58 -14.67 13.08 -35.23 -0.46 -15.13 16 20 C -0.54 -13.96 8.12 -34.44 -0.28 -14.24 16 21 H 0.07 1.75 7.78 -52.49 -0.41 1.35 16 22 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 23 N -0.89 -23.55 10.97 55.43 0.61 -22.94 16 24 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.10 2.42 5.24 -3.07 -0.02 2.40 16 29 C 0.11 1.23 5.82 -3.71 -0.02 1.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 2.68 9.12 45.56 0.42 3.10 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.17 3.01 3.60 -57.04 -0.21 2.80 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.53 6.34 -51.93 -0.33 1.20 16 42 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.38 9.75 7.45 45.56 0.34 10.09 16 45 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.07 1.91 7.81 -51.93 -0.41 1.51 16 47 H 0.07 1.86 7.92 -51.93 -0.41 1.45 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.09 1.14 7.02 -51.93 -0.36 0.78 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -29.89 379.56 -7.58 -37.47 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -6.21 Total: 16.61 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -0.91 Total: 12.52 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.38 Total: -44.57 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.78 Total: -43.07 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.89 -7.58 -37.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326229537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.757 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds