Wall clock time and date at job start Sat Apr 11 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49523 * 2 1 4 4 C 1.53037 * 109.50007 * 239.93488 * 2 1 3 5 5 C 1.53110 * 109.50145 * 301.37460 * 4 2 1 6 6 H 1.09003 * 109.50899 * 58.63300 * 5 4 2 7 7 C 1.52995 * 109.48823 * 178.70032 * 5 4 2 8 8 O 1.42900 * 109.47030 * 184.85690 * 7 5 4 9 9 C 1.53190 * 109.33059 * 298.66243 * 5 4 2 10 10 N 1.46917 * 108.77931 * 54.63371 * 9 5 4 11 11 C 1.34779 * 120.63075 * 126.36761 * 10 9 5 12 12 O 1.21357 * 119.99829 * 177.56716 * 11 10 9 13 13 C 1.49444 * 120.00049 * 357.57018 * 11 10 9 14 14 O 1.21343 * 120.00287 * 6.89973 * 13 11 10 15 15 N 1.34784 * 120.00042 * 186.89841 * 13 11 10 16 16 C 1.47431 * 125.64434 * 359.69208 * 15 13 11 17 17 C 1.55130 * 104.71890 * 155.81412 * 16 15 13 18 18 C 1.55163 * 101.48422 * 37.29587 * 17 16 15 19 19 O 1.42899 * 110.87368 * 82.76675 * 18 17 16 20 20 C 1.50701 * 110.71805 * 205.96754 * 18 17 16 21 21 H 1.07996 * 120.00338 * 354.97274 * 20 18 17 22 22 C 1.37881 * 119.99929 * 174.97705 * 20 18 17 23 23 N 1.31515 * 120.00060 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 119.99931 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47466 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46875 * 119.99923 * 24 22 20 27 27 H 1.48503 * 109.47367 * 239.99677 * 24 22 20 28 28 C 1.47017 * 125.65124 * 179.97438 * 15 13 11 29 29 C 1.46930 * 118.73861 * 306.39293 * 10 9 5 30 30 H 1.09006 * 109.47607 * 300.00227 * 1 2 3 31 31 H 1.09005 * 109.46656 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47262 * 60.00924 * 1 2 3 33 33 H 1.08997 * 109.46434 * 61.42859 * 4 2 1 34 34 H 1.09005 * 109.45872 * 181.39137 * 4 2 1 35 35 H 1.09002 * 109.47378 * 304.85518 * 7 5 4 36 36 H 1.08995 * 109.47082 * 64.86094 * 7 5 4 37 37 H 0.96698 * 113.99923 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.58644 * 294.83867 * 9 5 4 39 39 H 1.09006 * 109.58477 * 174.42254 * 9 5 4 40 40 H 1.08994 * 110.36746 * 274.74043 * 16 15 13 41 41 H 1.08999 * 110.36530 * 37.06978 * 16 15 13 42 42 H 1.08997 * 111.19649 * 279.19511 * 17 16 15 43 43 H 1.08997 * 110.93912 * 155.28369 * 17 16 15 44 44 H 0.96699 * 114.00109 * 184.94018 * 19 18 17 45 45 H 0.96996 * 120.00246 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88572 * 300.44829 * 28 15 13 47 47 H 1.09005 * 109.87998 * 61.60950 * 28 15 13 48 48 H 1.09002 * 109.58042 * 293.81866 * 29 10 9 49 49 H 1.09006 * 109.58792 * 173.39739 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5031 -2.1562 -1.2652 6 1 0.4133 -2.1364 -1.2536 7 6 1.9875 -2.8683 -2.5298 8 8 1.3948 -4.1666 -2.6020 9 6 2.0141 -2.9039 -0.0297 10 7 1.6516 -2.1377 1.1703 11 6 0.9740 -2.7211 2.1788 12 8 0.7190 -2.0899 3.1835 13 6 0.5368 -4.1452 2.0599 14 8 0.8977 -4.8137 1.1137 15 7 -0.2583 -4.6871 3.0037 16 6 -0.7633 -3.9942 4.2031 17 6 -2.0520 -4.7658 4.5908 18 6 -1.6469 -6.2276 4.2642 19 8 -0.9028 -6.8023 5.3403 20 6 -2.8634 -7.0615 3.9546 21 1 -3.8506 -6.6365 4.0602 22 6 -2.7161 -8.3671 3.5366 23 7 -1.5140 -8.8846 3.4075 24 14 -4.2240 -9.4009 3.1536 25 1 -5.4489 -8.5913 3.3758 26 1 -4.1740 -9.8433 1.7368 27 1 -4.2479 -10.5900 4.0428 28 6 -0.7609 -6.0687 3.0108 29 6 2.0413 -0.7233 1.2498 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 -0.8900 33 1 1.6988 -0.1953 -2.1389 34 1 3.1306 -0.7440 -1.2354 35 1 1.6995 -2.2881 -3.4065 36 1 3.0727 -2.9656 -2.4989 37 1 1.6582 -4.6764 -3.3803 38 1 3.0981 -3.0042 -0.0857 39 1 1.5556 -3.8918 0.0151 40 1 -0.0304 -4.0465 5.0082 41 1 -0.9990 -2.9558 3.9702 42 1 -2.8989 -4.4498 3.9816 43 1 -2.2715 -4.6491 5.6520 44 1 -0.5622 -7.6879 5.1542 45 1 -1.4103 -9.8029 3.1131 46 1 -1.3514 -6.2530 2.1133 47 1 0.0749 -6.7669 3.0569 48 1 3.1274 -0.6458 1.2983 49 1 1.6007 -0.2723 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326229537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:23 Heat of formation + Delta-G solvation = -171.803145 kcal Electronic energy + Delta-G solvation = -31927.154924 eV Core-core repulsion = 27660.909627 eV Total energy + Delta-G solvation = -4266.245297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21926 -40.56970 -39.20903 -39.04506 -37.44890 -36.23757 -34.50891 -34.24981 -33.24186 -31.92082 -29.77130 -28.48934 -27.71852 -26.78203 -26.74386 -24.84788 -23.48030 -22.28205 -21.51101 -20.78884 -19.78145 -19.14251 -18.36190 -18.14409 -18.12131 -17.47322 -17.15209 -17.04375 -16.33201 -16.14929 -15.85777 -15.59325 -15.35454 -15.02578 -14.84430 -14.83033 -14.63624 -14.41223 -14.23716 -14.10168 -13.93758 -13.54395 -13.43039 -13.20428 -13.04168 -12.87996 -12.60789 -12.38829 -12.32106 -12.25716 -12.18671 -12.13182 -12.09044 -11.73656 -11.47344 -11.41086 -11.15607 -10.86555 -10.67715 -10.36834 -9.98501 -9.89432 -9.66425 -8.27628 -6.43501 0.29842 1.21181 1.41284 1.44287 1.55070 2.06039 2.32300 2.40405 2.98357 3.06846 3.33144 3.74953 3.78433 3.82684 3.89802 3.96138 4.00556 4.12976 4.21106 4.32078 4.42435 4.54510 4.57125 4.58843 4.61912 4.63850 4.67920 4.69603 4.79167 4.89112 4.91360 4.96954 5.03181 5.05352 5.08144 5.16089 5.22929 5.28367 5.29202 5.40485 5.44671 5.54342 5.71982 5.97157 6.03178 6.30312 6.60668 6.68098 6.89687 6.98432 7.25741 7.33789 8.79123 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003342 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.010666 B = 8375.148021 C = 9442.737161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.117 0.883 4 C -0.103 4.103 5 C -0.101 4.101 6 H 0.059 0.941 7 C 0.083 3.917 8 O -0.598 6.598 9 C 0.052 3.948 10 N -0.570 5.570 11 C 0.513 3.487 12 O -0.535 6.535 13 C 0.499 3.501 14 O -0.537 6.537 15 N -0.583 5.583 16 C 0.112 3.888 17 C -0.114 4.114 18 C 0.234 3.766 19 O -0.586 6.586 20 C -0.558 4.558 21 H 0.067 0.933 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.277 1.277 28 C 0.121 3.879 29 C 0.103 3.897 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.394 0.606 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.376 0.624 45 H 0.271 0.729 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.093 0.907 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 17.809 -11.656 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 H 0.135 0.865 4 C -0.140 4.140 5 C -0.120 4.120 6 H 0.077 0.923 7 C 0.005 3.995 8 O -0.406 6.406 9 C -0.069 4.069 10 N -0.302 5.302 11 C 0.295 3.705 12 O -0.413 6.413 13 C 0.283 3.717 14 O -0.418 6.418 15 N -0.315 5.315 16 C -0.010 4.010 17 C -0.152 4.152 18 C 0.194 3.806 19 O -0.394 6.394 20 C -0.596 4.596 21 H 0.086 0.914 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.790 3.210 25 H -0.190 1.190 26 H -0.208 1.208 27 H -0.203 1.203 28 C -0.002 4.002 29 C -0.018 4.018 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.243 0.757 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.111 0.889 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.643 18.455 -10.858 23.091 hybrid contribution -0.256 -1.933 -0.957 2.172 sum 8.387 16.522 -11.815 21.975 Atomic orbital electron populations 1.21859 0.95847 1.00608 1.02247 1.21501 0.95713 1.00697 0.93639 0.86484 1.21578 1.01584 0.92560 0.98291 1.21551 1.00765 0.96051 0.93682 0.92288 1.22226 0.96990 0.83584 0.96651 1.86585 1.73377 1.29704 1.50919 1.23273 1.01398 0.99872 0.82379 1.48010 1.52362 1.12466 1.17321 1.19724 0.79780 0.86729 0.84284 1.90673 1.56046 1.64724 1.29849 1.20390 0.79960 0.88960 0.82366 1.90323 1.56935 1.63322 1.31194 1.48783 1.45605 1.14421 1.22651 1.22624 0.95594 0.96972 0.85785 1.22860 0.96342 0.93265 1.02699 1.19703 0.87924 0.90985 0.81998 1.86116 1.73975 1.36260 1.43069 1.21825 0.93340 0.97734 1.46663 0.91435 1.25797 0.99072 0.98853 0.93560 1.69795 1.22892 1.15830 1.46821 0.85406 0.79586 0.78441 0.77610 1.19024 1.20774 1.20262 1.22738 0.96895 0.79234 1.01296 1.22098 1.01055 0.78424 1.00209 0.92972 0.95313 0.90956 0.89400 0.89652 0.91401 0.91996 0.75654 0.90656 0.84853 0.91274 0.88362 0.89654 0.89008 0.77421 0.91941 0.93569 0.93767 0.88867 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.70 71.98 0.63 -2.12 16 2 C -0.10 -1.40 3.21 -10.72 -0.03 -1.44 16 3 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.10 -1.33 4.72 30.64 0.14 -1.18 16 5 C -0.10 -2.09 2.23 -10.70 -0.02 -2.11 16 6 H 0.06 1.53 6.34 -2.39 -0.02 1.52 16 7 C 0.08 1.43 6.43 71.98 0.46 1.89 16 8 O -0.60 -14.07 13.30 -148.98 -1.98 -16.06 16 9 C 0.05 1.39 5.36 86.36 0.46 1.85 16 10 N -0.57 -15.92 2.41 -820.48 -1.98 -17.90 16 11 C 0.51 18.27 7.71 87.27 0.67 18.94 16 12 O -0.53 -19.74 13.31 -3.27 -0.04 -19.78 16 13 C 0.50 21.11 7.83 87.27 0.68 21.79 16 14 O -0.54 -24.45 13.35 -3.23 -0.04 -24.49 16 15 N -0.58 -25.89 3.33 -812.94 -2.70 -28.60 16 16 C 0.11 4.43 5.97 86.93 0.52 4.95 16 17 C -0.11 -4.72 6.24 32.07 0.20 -4.52 16 18 C 0.23 11.67 0.85 -10.35 -0.01 11.66 16 19 O -0.59 -30.30 13.08 -148.98 -1.95 -32.25 16 20 C -0.56 -29.59 8.12 25.60 0.21 -29.38 16 21 H 0.07 3.51 7.78 -2.91 -0.02 3.48 16 22 C 0.03 1.49 5.28 84.66 0.45 1.94 16 23 N -0.91 -49.54 10.97 21.45 0.24 -49.30 16 24 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 28 C 0.12 6.10 5.24 86.73 0.45 6.55 16 29 C 0.10 2.04 5.82 86.36 0.50 2.54 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.03 0.71 5.97 -2.38 -0.01 0.69 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.39 5.42 9.12 -74.06 -0.68 4.74 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.14 4.85 3.60 -83.33 -0.30 4.55 16 40 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.10 3.60 6.34 -2.39 -0.02 3.58 16 42 H 0.08 3.38 8.04 -2.39 -0.02 3.36 16 43 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 44 H 0.38 20.00 7.45 -74.06 -0.55 19.45 16 45 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 46 H 0.05 2.54 7.81 -2.39 -0.02 2.52 16 47 H 0.04 2.43 7.92 -2.38 -0.02 2.41 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.09 1.90 7.02 -2.38 -0.02 1.88 16 Total: -1.00 -67.29 379.56 -1.65 -68.94 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -0.53 Total: 43.92 kcal Atomic # 6 Polarization: 26.04 SS G_CDS: 5.32 Total: 31.35 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -4.45 Total: -95.80 kcal Atomic # 8 Polarization: -88.57 SS G_CDS: -4.02 Total: -92.58 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.29 -1.65 -68.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326229537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.863 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds