Wall clock time and date at job start Sat Apr 11 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49797 * 2 1 4 4 C 1.53038 * 109.49827 * 239.93155 * 2 1 3 5 5 C 1.53038 * 109.53642 * 178.68674 * 4 2 1 6 6 H 1.09002 * 109.49388 * 301.41001 * 5 4 2 7 7 C 1.53001 * 109.52229 * 181.33378 * 5 4 2 8 8 O 1.42909 * 109.47124 * 175.14216 * 7 5 4 9 9 C 1.53187 * 109.31582 * 61.36478 * 5 4 2 10 10 N 1.46921 * 108.77613 * 305.36600 * 9 5 4 11 11 C 1.34782 * 120.63025 * 233.58687 * 10 9 5 12 12 O 1.21346 * 120.00014 * 7.14622 * 11 10 9 13 13 C 1.49454 * 119.99726 * 187.14435 * 11 10 9 14 14 O 1.21342 * 120.00376 * 6.84705 * 13 11 10 15 15 N 1.34775 * 119.99651 * 186.84788 * 13 11 10 16 16 C 1.47424 * 125.65117 * 0.02562 * 15 13 11 17 17 C 1.54912 * 104.83116 * 155.83801 * 16 15 13 18 18 C 1.55155 * 101.58150 * 37.01353 * 17 16 15 19 19 O 1.42909 * 110.71812 * 83.03720 * 18 17 16 20 20 C 1.50703 * 110.72195 * 206.13306 * 18 17 16 21 21 H 1.08000 * 119.99571 * 4.42383 * 20 18 17 22 22 C 1.37879 * 120.00224 * 184.42489 * 20 18 17 23 23 N 1.31517 * 119.99428 * 4.77934 * 22 20 18 24 24 Si 1.86793 * 119.99975 * 184.77488 * 22 20 18 25 25 H 1.48493 * 109.47387 * 265.00198 * 24 22 20 26 26 H 1.48505 * 109.46827 * 144.99965 * 24 22 20 27 27 H 1.48504 * 109.47317 * 25.00347 * 24 22 20 28 28 C 1.47029 * 125.64595 * 179.97438 * 15 13 11 29 29 C 1.46928 * 118.74140 * 53.85899 * 10 9 5 30 30 H 1.09005 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47640 * 300.06814 * 1 2 3 32 32 H 1.08996 * 109.47450 * 60.07175 * 1 2 3 33 33 H 1.09000 * 109.46141 * 58.66254 * 4 2 1 34 34 H 1.09000 * 109.46141 * 298.70300 * 4 2 1 35 35 H 1.09003 * 109.47000 * 295.13922 * 7 5 4 36 36 H 1.08995 * 109.47198 * 55.14646 * 7 5 4 37 37 H 0.96693 * 113.99880 * 179.97438 * 8 7 5 38 38 H 1.09009 * 109.58899 * 185.57623 * 9 5 4 39 39 H 1.09005 * 109.58824 * 65.15360 * 9 5 4 40 40 H 1.09001 * 110.36473 * 37.00474 * 16 15 13 41 41 H 1.09001 * 110.46390 * 274.72824 * 16 15 13 42 42 H 1.08994 * 111.00576 * 278.93470 * 17 16 15 43 43 H 1.09002 * 111.00065 * 155.08535 * 17 16 15 44 44 H 0.96707 * 113.99071 * 177.59976 * 19 18 17 45 45 H 0.97008 * 119.99234 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.88227 * 61.67705 * 28 15 13 47 47 H 1.08997 * 109.88232 * 300.51009 * 28 15 13 48 48 H 1.09002 * 109.58377 * 65.92558 * 29 10 9 49 49 H 1.09002 * 109.58727 * 186.35365 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6948 -1.2660 6 1 3.9159 0.3391 -1.2539 7 6 4.0804 -1.3884 -2.5310 8 8 5.5022 -1.2628 -2.6033 9 6 4.1052 -1.4267 -0.0310 10 7 3.5045 -0.8295 1.1694 11 6 4.2811 -0.3870 2.1783 12 8 5.4873 -0.3596 2.0485 13 6 3.6565 0.0701 3.4568 14 8 2.4646 -0.0722 3.6347 15 7 4.4171 0.6404 4.4122 16 6 5.8702 0.8740 4.3280 17 6 6.1410 2.0444 5.3060 18 6 5.1497 1.7250 6.4560 19 8 5.7109 0.7673 7.3560 20 6 4.7632 2.9823 7.1915 21 1 5.1159 3.9418 6.8430 22 6 3.9594 2.9078 8.3093 23 7 3.6072 1.7349 8.7888 24 14 3.3709 4.4726 9.1425 25 1 4.2876 4.8132 10.2600 26 1 1.9994 4.2652 9.6729 27 1 3.3578 5.5834 8.1570 28 6 3.9347 1.1335 5.7106 29 6 2.0410 -0.7292 1.2519 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3634 0.5127 -0.8906 33 1 1.6582 -0.2240 -2.1389 34 1 1.6967 -1.7570 -1.2357 35 1 3.8100 -2.4439 -2.5007 36 1 3.6297 -0.9227 -3.4074 37 1 5.8948 -1.6808 -3.3818 38 1 5.1896 -1.3247 0.0136 39 1 3.8375 -2.4819 -0.0872 40 1 6.1510 1.1552 3.3130 41 1 6.4179 -0.0154 4.6397 42 1 5.9066 3.0028 4.8429 43 1 7.1712 2.0258 5.6618 44 1 5.1457 0.5607 8.1130 45 1 3.0420 1.6825 9.5755 46 1 3.5119 0.3100 6.2860 47 1 3.1816 1.9063 5.5571 48 1 1.6084 -1.7287 1.2981 49 1 1.7629 -0.1668 2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326229542.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:31 Heat of formation + Delta-G solvation = -179.148810 kcal Electronic energy + Delta-G solvation = -31350.881328 eV Core-core repulsion = 27084.317500 eV Total energy + Delta-G solvation = -4266.563829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18779 -40.52115 -39.17082 -39.03094 -37.51675 -36.25328 -34.63200 -34.12142 -33.59555 -31.94781 -29.86304 -28.30215 -27.70210 -26.90499 -26.64758 -24.80443 -23.22705 -21.77950 -21.51373 -21.19363 -20.29370 -19.24613 -18.30856 -18.26110 -18.06861 -17.51581 -17.05887 -17.01838 -16.61176 -16.25161 -15.83547 -15.58950 -15.21248 -14.96127 -14.87386 -14.80850 -14.67427 -14.55150 -14.08475 -14.00575 -13.60890 -13.54406 -13.42901 -13.38502 -13.07891 -12.89307 -12.61918 -12.44407 -12.35356 -12.30838 -12.25778 -12.15380 -11.92601 -11.76639 -11.60664 -11.49039 -11.26623 -10.87502 -10.64696 -10.40815 -10.16852 -9.90767 -9.70669 -8.30018 -6.45338 0.25509 1.15970 1.42573 1.44761 1.55070 2.00586 2.29322 2.38760 2.95468 3.05336 3.25462 3.71698 3.76167 3.80111 3.89475 3.96418 4.05379 4.11990 4.18273 4.30293 4.39472 4.48278 4.51907 4.55770 4.57527 4.63271 4.69138 4.73716 4.80714 4.86974 4.91237 4.94061 4.98956 5.04141 5.07179 5.13830 5.23153 5.28884 5.32967 5.36216 5.43787 5.46276 5.73792 5.92692 5.99182 6.26252 6.53701 6.62670 6.84075 6.96477 7.26608 7.48718 8.76636 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.002839 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.691007 B = 9860.412544 C =10773.268833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.058 0.942 4 C -0.101 4.101 5 C -0.099 4.099 6 H 0.059 0.941 7 C 0.086 3.914 8 O -0.598 6.598 9 C 0.115 3.885 10 N -0.577 5.577 11 C 0.510 3.490 12 O -0.536 6.536 13 C 0.504 3.496 14 O -0.541 6.541 15 N -0.580 5.580 16 C 0.112 3.888 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.594 6.594 20 C -0.555 4.555 21 H 0.070 0.930 22 C 0.026 3.974 23 N -0.918 5.918 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.267 1.267 28 C 0.110 3.890 29 C 0.065 3.935 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.384 0.616 45 H 0.275 0.725 46 H 0.041 0.959 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -6.564 -23.327 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.076 0.924 4 C -0.138 4.138 5 C -0.118 4.118 6 H 0.078 0.922 7 C 0.008 3.992 8 O -0.407 6.407 9 C -0.006 4.006 10 N -0.309 5.309 11 C 0.293 3.707 12 O -0.413 6.413 13 C 0.288 3.712 14 O -0.422 6.422 15 N -0.311 5.311 16 C -0.010 4.010 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.406 6.406 20 C -0.593 4.593 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.559 5.559 24 Si 0.793 3.207 25 H -0.200 1.200 26 H -0.207 1.207 27 H -0.191 1.191 28 C -0.012 4.012 29 C -0.056 4.056 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.238 0.762 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.100 0.900 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.972 -6.424 -23.082 24.286 hybrid contribution -0.713 0.282 0.922 1.199 sum -4.686 -6.142 -22.160 23.467 Atomic orbital electron populations 1.21704 0.92565 1.02959 1.02406 1.21541 0.97348 0.99037 0.94154 0.92382 1.21581 0.92071 1.02254 0.97918 1.21503 0.96855 0.99865 0.93605 0.92224 1.22179 0.80860 0.99943 0.96172 1.86497 1.21322 1.81730 1.51155 1.21872 0.99136 0.97192 0.82370 1.48063 1.08444 1.57779 1.16610 1.19874 0.86756 0.79327 0.84767 1.90693 1.14503 1.54444 1.81680 1.20192 0.86272 0.79542 0.85169 1.90421 1.14986 1.57570 1.79237 1.48710 1.10873 1.55204 1.16314 1.22559 0.78637 0.98679 1.01116 1.22845 1.00623 0.97426 0.94403 1.19693 0.87533 0.86535 0.86907 1.86064 1.50624 1.63596 1.40346 1.21842 1.31700 0.93615 1.12187 0.91216 1.25830 0.94791 0.99763 0.97016 1.69383 1.37205 1.25005 1.24280 0.85377 0.77529 0.79277 0.78488 1.19985 1.20717 1.19128 1.22905 0.99939 0.96938 0.81423 1.23181 0.76789 1.03258 1.02401 0.91240 0.93295 0.90742 0.89251 0.89672 0.91515 0.91247 0.75197 0.90413 0.89336 0.88514 0.91521 0.89545 0.89222 0.76197 0.91530 0.94031 0.92651 0.90039 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 71.98 0.66 -1.37 16 2 C -0.10 -1.87 2.89 -10.57 -0.03 -1.90 16 3 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.10 -1.32 4.45 30.62 0.14 -1.18 16 5 C -0.10 -1.71 2.58 -10.72 -0.03 -1.74 16 6 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 7 C 0.09 1.02 6.43 71.98 0.46 1.49 16 8 O -0.60 -9.44 13.30 -148.98 -1.98 -11.43 16 9 C 0.12 2.64 5.56 86.36 0.48 3.12 16 10 N -0.58 -16.41 2.97 -819.61 -2.43 -18.84 16 11 C 0.51 18.38 7.69 87.27 0.67 19.05 16 12 O -0.54 -20.74 13.32 -3.24 -0.04 -20.78 16 13 C 0.50 20.66 7.78 87.27 0.68 21.34 16 14 O -0.54 -23.07 13.46 -3.22 -0.04 -23.11 16 15 N -0.58 -25.27 3.33 -813.36 -2.71 -27.97 16 16 C 0.11 4.47 5.96 86.86 0.52 4.99 16 17 C -0.12 -4.79 6.23 31.99 0.20 -4.60 16 18 C 0.23 11.64 0.88 -10.35 -0.01 11.63 16 19 O -0.59 -31.52 13.10 -148.98 -1.95 -33.47 16 20 C -0.56 -29.10 8.09 25.60 0.21 -28.89 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 22 C 0.03 1.36 5.32 84.65 0.45 1.81 16 23 N -0.92 -48.98 10.87 21.45 0.23 -48.75 16 24 Si 0.97 41.42 29.54 68.60 2.03 43.44 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 C 0.11 5.44 5.94 86.73 0.52 5.95 16 29 C 0.06 1.60 5.34 86.51 0.46 2.07 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.40 2.38 9.12 -74.06 -0.68 1.70 16 38 H 0.08 2.19 6.84 -2.38 -0.02 2.17 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.10 3.61 6.36 -2.39 -0.02 3.60 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.09 3.38 8.00 -2.39 -0.02 3.36 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.38 21.13 6.43 -74.05 -0.48 20.66 16 45 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 46 H 0.04 2.22 8.07 -2.39 -0.02 2.20 16 47 H 0.06 2.86 7.81 -2.39 -0.02 2.84 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.12 3.79 4.21 -56.35 -0.24 3.55 16 Total: -1.00 -65.49 384.28 -1.92 -67.41 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.40 Total: 41.74 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 5.38 Total: 31.75 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -4.90 Total: -95.56 kcal Atomic # 8 Polarization: -84.77 SS G_CDS: -4.02 Total: -88.79 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -65.49 -1.92 -67.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326229542.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.734 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds