Wall clock time and date at job start Sat Apr 11 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99488 * 2 1 4 4 H 1.08998 * 109.45509 * 30.03698 * 3 2 1 5 5 C 1.53042 * 109.46291 * 270.06877 * 3 2 1 6 6 C 1.53624 * 109.24426 * 178.49331 * 5 3 2 7 7 N 1.46930 * 108.54402 * 54.85668 * 6 5 3 8 8 C 1.34776 * 120.62905 * 126.36931 * 7 6 5 9 9 O 1.21348 * 119.99572 * 188.41875 * 8 7 6 10 10 C 1.49448 * 120.00191 * 8.42200 * 8 7 6 11 11 O 1.21348 * 119.99803 * 6.74158 * 10 8 7 12 12 N 1.34776 * 119.99854 * 186.75016 * 10 8 7 13 13 C 1.47022 * 125.65125 * 359.94831 * 12 10 8 14 14 C 1.54322 * 107.27311 * 181.10046 * 13 12 10 15 15 C 1.55152 * 102.94101 * 22.19694 * 14 13 12 16 16 O 1.42894 * 111.04024 * 82.58659 * 15 14 13 17 17 C 1.50705 * 111.00547 * 206.42449 * 15 14 13 18 18 H 1.08008 * 119.99489 * 353.65117 * 17 15 14 19 19 C 1.37871 * 120.00386 * 173.64900 * 17 15 14 20 20 N 1.31517 * 119.99959 * 0.27374 * 19 17 15 21 21 Si 1.86797 * 120.00288 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.47116 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47451 * 119.99965 * 21 19 17 24 24 H 1.48498 * 109.47426 * 240.00176 * 21 19 17 25 25 C 1.47422 * 125.64723 * 180.02562 * 12 10 8 26 26 C 1.46921 * 118.73465 * 306.09430 * 7 6 5 27 27 C 1.53046 * 109.45912 * 150.00434 * 3 2 1 28 28 H 1.09007 * 109.49123 * 301.33308 * 27 3 2 29 29 C 1.52991 * 109.52747 * 61.41655 * 27 3 2 30 30 H 1.09002 * 109.46623 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47090 * 299.99445 * 1 2 3 32 32 H 1.08994 * 109.47450 * 60.00150 * 1 2 3 33 33 H 1.09007 * 109.49749 * 298.57043 * 5 3 2 34 34 H 1.09001 * 109.49481 * 58.63012 * 5 3 2 35 35 H 1.09000 * 109.74050 * 295.11833 * 6 5 3 36 36 H 1.09001 * 109.66199 * 174.55119 * 6 5 3 37 37 H 1.08997 * 109.88400 * 300.52548 * 13 12 10 38 38 H 1.09006 * 109.87793 * 61.52714 * 13 12 10 39 39 H 1.09003 * 110.71910 * 263.83613 * 14 13 12 40 40 H 1.08992 * 110.72207 * 140.55921 * 14 13 12 41 41 H 0.96701 * 114.00531 * 183.20222 * 16 15 14 42 42 H 0.96998 * 119.99774 * 359.72910 * 20 19 17 43 43 H 1.09003 * 110.37197 * 36.98721 * 25 12 10 44 44 H 1.09011 * 110.36574 * 274.66720 * 25 12 10 45 45 H 1.09002 * 109.58232 * 173.65036 * 26 7 6 46 46 H 1.08997 * 109.58979 * 293.92910 * 26 7 6 47 47 H 1.08994 * 109.47588 * 179.85702 * 29 27 3 48 48 H 1.08998 * 109.47047 * 299.85991 * 29 27 3 49 49 H 1.09005 * 109.47211 * 59.85308 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9990 0.5144 5 6 2.2159 1.7721 -1.4430 6 6 2.8056 3.1906 -1.4372 7 7 4.0300 3.1844 -0.6250 8 6 5.1912 3.6463 -1.1298 9 8 6.2239 3.4972 -0.5103 10 6 5.2068 4.3422 -2.4523 11 8 4.1628 4.6003 -3.0144 12 7 6.3804 4.6830 -3.0206 13 6 7.7127 4.4326 -2.4516 14 6 8.7483 5.0179 -3.4347 15 6 7.9220 6.0653 -4.2268 16 8 7.8300 7.2966 -3.5076 17 6 8.5041 6.2869 -5.5991 18 1 9.4407 5.8221 -5.8699 19 6 7.8411 7.0828 -6.5090 20 7 6.7033 7.6531 -6.1774 21 14 8.5630 7.3580 -8.2097 22 1 9.8440 6.6161 -8.3297 23 1 7.6096 6.8680 -9.2374 24 1 8.8093 8.8081 -8.4143 25 6 6.5408 5.3699 -4.3151 26 6 3.9630 2.6707 0.7498 27 6 3.3592 1.2631 0.7214 28 1 3.2149 0.9084 1.7420 29 6 4.3056 0.3163 -0.0192 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.9007 1.0928 -1.9508 34 1 1.2580 1.7791 -1.9631 35 1 2.0855 3.8869 -1.0074 36 1 3.0450 3.4924 -2.4569 37 1 7.8009 4.9253 -1.4833 38 1 7.8714 3.3602 -2.3373 39 1 9.1288 4.2433 -4.1005 40 1 9.5639 5.4986 -2.8947 41 1 7.2820 7.9653 -3.9409 42 1 6.3287 7.5105 -5.2942 43 1 5.7518 6.1093 -4.4526 44 1 6.5314 4.6477 -5.1316 45 1 4.9664 2.6294 1.1737 46 1 3.3375 3.3268 1.3550 47 1 5.2669 0.2886 0.4938 48 1 3.8755 -0.6851 -0.0392 49 1 4.4486 0.6706 -1.0401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326265254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:48 Heat of formation + Delta-G solvation = -160.004459 kcal Electronic energy + Delta-G solvation = -31664.390879 eV Core-core repulsion = 27398.657212 eV Total energy + Delta-G solvation = -4265.733667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28379 -40.83075 -39.68410 -39.14384 -37.65538 -36.45570 -34.33161 -34.15838 -32.43394 -32.13806 -29.74303 -28.51095 -27.96534 -27.39646 -26.06960 -24.69629 -24.16043 -23.17288 -21.76486 -20.98427 -20.07633 -19.78744 -18.50200 -18.29934 -17.61790 -17.47490 -16.98365 -16.92011 -16.40015 -16.20669 -16.05717 -15.71931 -15.61871 -15.52551 -15.09378 -14.95422 -14.80864 -14.42728 -14.28829 -14.00044 -13.86238 -13.74733 -13.46486 -13.12115 -12.96814 -12.85007 -12.77308 -12.65569 -12.48246 -12.37687 -12.30681 -12.15922 -12.04328 -11.91118 -11.76765 -11.44288 -11.32800 -10.75427 -10.62934 -10.38755 -10.14598 -9.97738 -9.73114 -8.67301 -6.53667 0.21655 1.10892 1.57282 1.63098 1.80879 1.96528 2.22674 2.52675 2.76811 2.96026 3.01270 3.53714 3.60133 3.69006 3.83285 3.86004 3.89133 4.01609 4.13471 4.16843 4.27573 4.37001 4.38860 4.48278 4.52747 4.54276 4.58740 4.62793 4.68300 4.71332 4.81162 4.82923 4.85426 4.89236 4.96080 5.04337 5.07039 5.08864 5.14539 5.22933 5.27827 5.40677 5.75523 5.87481 6.06634 6.16941 6.25647 6.42314 6.50668 6.79428 6.89783 7.26517 8.62423 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002704 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.294656 B =10350.691920 C =10956.675041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.096 3.904 4 H 0.081 0.919 5 C -0.151 4.151 6 C 0.072 3.928 7 N -0.575 5.575 8 C 0.516 3.484 9 O -0.530 6.530 10 C 0.503 3.497 11 O -0.542 6.542 12 N -0.580 5.580 13 C 0.119 3.881 14 C -0.108 4.108 15 C 0.212 3.788 16 O -0.587 6.587 17 C -0.623 4.623 18 H 0.064 0.936 19 C -0.015 4.015 20 N -0.925 5.925 21 Si 1.122 2.878 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.095 3.905 26 C 0.111 3.889 27 C -0.095 4.095 28 H 0.110 0.890 29 C -0.137 4.137 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.366 0.634 42 H 0.261 0.739 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.054 0.946 48 H 0.063 0.937 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 -13.928 13.655 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.038 3.962 4 H 0.099 0.901 5 C -0.189 4.189 6 C -0.049 4.049 7 N -0.308 5.308 8 C 0.298 3.702 9 O -0.407 6.407 10 C 0.287 3.713 11 O -0.423 6.423 12 N -0.312 5.312 13 C -0.003 4.003 14 C -0.145 4.145 15 C 0.172 3.828 16 O -0.394 6.394 17 C -0.661 4.661 18 H 0.082 0.918 19 C -0.215 4.215 20 N -0.566 5.566 21 Si 0.944 3.056 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.028 4.028 26 C -0.010 4.010 27 C -0.114 4.114 28 H 0.128 0.872 29 C -0.194 4.194 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.214 0.786 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.326 -13.644 12.772 21.351 hybrid contribution -0.483 -0.009 0.802 0.936 sum -10.808 -13.653 13.573 22.078 Atomic orbital electron populations 1.22966 0.79828 1.03659 1.00786 1.87901 1.21040 1.27803 1.95098 1.22130 0.94472 0.84921 0.94655 0.90064 1.22500 1.02166 0.95718 0.98533 1.22878 0.85038 0.97371 0.99607 1.47977 1.08446 1.59060 1.15298 1.19709 0.84599 0.80110 0.85779 1.90710 1.31964 1.56938 1.61116 1.20320 0.83001 0.81188 0.86773 1.90467 1.30565 1.55950 1.65332 1.48643 1.06534 1.54710 1.21286 1.22177 0.80080 1.01138 0.96921 1.22641 0.97277 0.97282 0.97343 1.20165 0.89644 0.82033 0.90969 1.86273 1.74172 1.26275 1.52687 1.22619 1.10290 1.34845 0.98363 0.91805 1.27296 0.94412 0.91813 1.07961 1.71035 1.19376 1.42960 1.23213 0.82838 0.75367 0.76913 0.70461 1.19467 1.20658 1.20683 1.23283 1.00756 0.95570 0.83154 1.22016 1.03715 0.94457 0.80769 1.21556 0.93860 0.94452 1.01514 0.87185 1.21693 0.98757 0.99484 0.99473 0.88769 0.92789 0.93627 0.91991 0.89230 0.89529 0.86333 0.90900 0.89695 0.88842 0.89552 0.78562 0.92557 0.92870 0.91761 0.88784 0.88317 0.92731 0.91816 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.40 -6.90 9.74 -148.98 -1.45 -8.35 16 3 C 0.10 1.54 2.25 30.62 0.07 1.61 16 4 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 5 C -0.15 -2.91 5.37 30.82 0.17 -2.74 16 6 C 0.07 1.69 6.01 86.51 0.52 2.21 16 7 N -0.57 -14.69 2.41 -819.65 -1.97 -16.66 16 8 C 0.52 17.06 7.69 87.27 0.67 17.73 16 9 O -0.53 -18.56 13.60 -3.24 -0.04 -18.61 16 10 C 0.50 19.70 7.77 87.27 0.68 20.38 16 11 O -0.54 -22.52 13.43 -3.24 -0.04 -22.56 16 12 N -0.58 -24.14 3.33 -813.39 -2.71 -26.85 16 13 C 0.12 4.44 5.51 86.73 0.48 4.92 16 14 C -0.11 -4.29 6.13 31.78 0.19 -4.10 16 15 C 0.21 10.23 0.83 -10.15 -0.01 10.22 16 16 O -0.59 -29.87 13.17 -148.98 -1.96 -31.84 16 17 C -0.62 -32.43 8.27 25.60 0.21 -32.22 16 18 H 0.06 3.26 7.79 -2.91 -0.02 3.24 16 19 C -0.01 -0.78 5.27 84.65 0.45 -0.33 16 20 N -0.93 -51.77 12.99 21.45 0.28 -51.50 16 21 Si 1.12 47.10 29.90 68.60 2.05 49.15 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.10 4.51 5.33 86.85 0.46 4.97 16 26 C 0.11 2.10 5.84 86.36 0.50 2.61 16 27 C -0.09 -1.56 2.94 -10.72 -0.03 -1.60 16 28 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 29 C -0.14 -2.77 8.57 71.98 0.62 -2.15 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.47 8.08 -2.39 -0.02 0.45 16 32 H 0.05 0.48 7.84 -2.39 -0.02 0.46 16 33 H 0.06 1.42 6.34 -2.38 -0.02 1.41 16 34 H 0.09 1.49 7.84 -2.39 -0.02 1.47 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 3.59 4.30 -48.55 -0.21 3.38 16 37 H 0.07 2.76 7.44 -2.39 -0.02 2.75 16 38 H 0.08 2.85 7.84 -2.38 -0.02 2.83 16 39 H 0.09 3.46 8.03 -2.39 -0.02 3.44 16 40 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.37 19.00 6.63 -74.06 -0.49 18.51 16 42 H 0.26 14.59 3.68 -92.71 -0.34 14.24 16 43 H 0.05 2.78 6.25 -2.39 -0.01 2.76 16 44 H 0.06 3.14 8.03 -2.38 -0.02 3.12 16 45 H 0.09 1.97 7.01 -2.39 -0.02 1.96 16 46 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 1.26 7.73 -2.39 -0.02 1.25 16 49 H 0.03 0.87 5.97 -2.38 -0.01 0.86 16 Total: -1.00 -63.97 375.92 1.07 -62.90 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: 0.71 Total: 41.29 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.20 Total: 23.01 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.40 Total: -95.00 kcal Atomic # 8 Polarization: -77.85 SS G_CDS: -3.50 Total: -81.35 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.05 Total: 49.15 kcal Total: -63.97 1.07 -62.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326265254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.100 kcal (2) G-P(sol) polarization free energy of solvation -63.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds