Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70194 * 2 1 4 4 C 1.52762 * 109.50712 * 239.88427 * 2 1 3 5 5 H 1.09004 * 109.38509 * 305.63157 * 4 2 1 6 6 C 1.52995 * 109.56660 * 65.67373 * 4 2 1 7 7 O 1.42902 * 109.47209 * 184.96541 * 6 4 2 8 8 C 1.53042 * 109.38267 * 185.70746 * 4 2 1 9 9 C 1.53037 * 109.53945 * 61.23785 * 8 4 2 10 10 C 1.53195 * 109.31654 * 298.63654 * 9 8 4 11 11 N 1.46927 * 109.58593 * 120.35853 * 2 1 3 12 12 C 1.34771 * 120.63283 * 353.41296 * 11 2 1 13 13 O 1.21352 * 119.99810 * 8.66097 * 12 11 2 14 14 C 1.49453 * 120.00377 * 188.65658 * 12 11 2 15 15 O 1.21350 * 119.99754 * 6.47929 * 14 12 11 16 16 N 1.34779 * 120.00277 * 186.47574 * 14 12 11 17 17 C 1.47023 * 125.64405 * 0.04800 * 16 14 12 18 18 C 1.54427 * 107.27694 * 181.02306 * 17 16 14 19 19 C 1.55165 * 102.89741 * 22.18314 * 18 17 16 20 20 O 1.42899 * 111.00266 * 82.59353 * 19 18 17 21 21 C 1.50695 * 111.00450 * 206.41045 * 19 18 17 22 22 H 1.08005 * 120.00168 * 356.81255 * 21 19 18 23 23 C 1.37877 * 119.99915 * 176.82235 * 21 19 18 24 24 N 1.31518 * 119.99930 * 359.97438 * 23 21 19 25 25 Si 1.86799 * 120.00208 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46657 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47225 * 119.99399 * 25 23 21 28 28 H 1.48492 * 109.47398 * 239.99599 * 25 23 21 29 29 C 1.47419 * 125.64820 * 180.02562 * 16 14 12 30 30 H 1.09000 * 109.47031 * 301.64174 * 1 2 3 31 31 H 1.08994 * 109.47145 * 61.64580 * 1 2 3 32 32 H 1.09001 * 109.46974 * 181.65118 * 1 2 3 33 33 H 1.09009 * 109.46725 * 304.96341 * 6 4 2 34 34 H 1.08995 * 109.47316 * 64.96367 * 6 4 2 35 35 H 0.96700 * 114.00197 * 179.97438 * 7 6 4 36 36 H 1.09006 * 109.45640 * 301.21906 * 8 4 2 37 37 H 1.08995 * 109.46138 * 181.25917 * 8 4 2 38 38 H 1.09005 * 109.49906 * 178.68834 * 9 8 4 39 39 H 1.09004 * 109.52647 * 58.60480 * 9 8 4 40 40 H 1.08998 * 109.58684 * 294.85051 * 10 9 8 41 41 H 1.08996 * 109.59234 * 174.41760 * 10 9 8 42 42 H 1.09004 * 109.88249 * 300.43103 * 17 16 14 43 43 H 1.08996 * 109.88848 * 61.45010 * 17 16 14 44 44 H 1.08999 * 110.72700 * 263.84467 * 18 17 16 45 45 H 1.09004 * 110.76199 * 140.53870 * 18 17 16 46 46 H 0.96701 * 113.99774 * 183.18729 * 20 19 18 47 47 H 0.97001 * 119.99752 * 179.97438 * 24 23 21 48 48 H 1.08997 * 110.36661 * 37.07084 * 29 16 14 49 49 H 1.09006 * 110.36573 * 274.74732 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2456 5 1 1.5963 -1.7169 -1.2943 6 6 1.6515 0.0720 -2.4940 7 8 2.0272 -0.6615 -3.6615 8 6 3.5638 -0.8462 -1.1727 9 6 3.9523 -1.6687 0.0580 10 6 3.4645 -0.9520 1.3211 11 7 2.0226 -0.6996 1.1944 12 6 1.1674 -1.1070 2.1532 13 8 -0.0298 -1.0401 1.9666 14 6 1.6935 -1.6412 3.4460 15 8 2.8835 -1.5996 3.6803 16 7 0.8464 -2.1690 4.3517 17 6 -0.6113 -2.2825 4.1972 18 6 -1.1611 -2.9231 5.4903 19 6 -0.0501 -2.6153 6.5287 20 8 -0.1945 -1.2956 7.0574 21 6 -0.0453 -3.6394 7.6342 22 1 -0.7921 -4.4194 7.6510 23 6 0.9125 -3.5806 8.6243 24 7 1.8222 -2.6310 8.6036 25 14 0.9181 -4.8497 9.9950 26 1 -0.2015 -5.8037 9.7907 27 1 2.2067 -5.5877 9.9811 28 1 0.7531 -4.1663 11.3030 29 6 1.2280 -2.7285 5.6611 30 1 -0.3633 0.5391 0.8749 31 1 -0.3633 0.4880 -0.9043 32 1 -0.3633 -1.0273 0.0296 33 1 0.5739 0.2362 -2.4992 34 1 2.1655 1.0331 -2.4876 35 1 1.8101 -0.2167 -4.4922 36 1 4.0057 0.1476 -1.0996 37 1 3.9313 -1.3416 -2.0713 38 1 5.0364 -1.7761 0.0965 39 1 3.4909 -2.6544 -0.0021 40 1 3.9929 -0.0050 1.4310 41 1 3.6504 -1.5799 2.1924 42 1 -1.0476 -1.2932 4.0592 43 1 -0.8452 -2.9135 3.3398 44 1 -1.2849 -3.9988 5.3654 45 1 -2.1020 -2.4568 5.7826 46 1 0.5052 -1.0402 7.6741 47 1 2.4958 -2.5895 9.3004 48 1 2.0379 -2.1465 6.1009 49 1 1.5236 -3.7724 5.5560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326545589.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = -161.382874 kcal Electronic energy + Delta-G solvation = -31686.073489 eV Core-core repulsion = 27420.280049 eV Total energy + Delta-G solvation = -4265.793440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30303 -40.64199 -39.12058 -38.96154 -37.37082 -36.11633 -34.21106 -34.14561 -33.80817 -31.97309 -29.77398 -29.28990 -27.58028 -26.86603 -25.97701 -24.51621 -23.11260 -22.57303 -21.54310 -21.23933 -20.10892 -19.17076 -18.43062 -18.14749 -17.75034 -17.30874 -17.07326 -16.90609 -16.30946 -16.10389 -15.99982 -15.93900 -15.41805 -14.99027 -14.84365 -14.72781 -14.66838 -14.31110 -14.08663 -13.91624 -13.61502 -13.51359 -13.47270 -13.32360 -13.22173 -12.87711 -12.74723 -12.55706 -12.34310 -12.22532 -12.16645 -12.13048 -12.06631 -11.77144 -11.58849 -11.29979 -11.11667 -10.77111 -10.68440 -10.39751 -9.91406 -9.74859 -9.57671 -8.26383 -6.42854 0.33160 1.20462 1.42244 1.45873 1.56361 2.08062 2.31554 2.40826 2.99597 3.12345 3.28676 3.63295 3.74575 3.77052 3.97297 4.05806 4.10729 4.14645 4.17013 4.24287 4.31466 4.38056 4.47352 4.49355 4.65152 4.68646 4.72615 4.75776 4.77440 4.89978 4.99554 5.02026 5.03427 5.05487 5.11028 5.14917 5.24878 5.30732 5.34660 5.38001 5.42634 5.57893 5.74410 6.00018 6.03751 6.31271 6.60258 6.67917 6.92565 6.95444 7.28034 7.35578 8.79660 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.002701 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.132538 B =10364.645179 C =10953.811046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.096 0.904 4 C -0.096 4.096 5 H 0.060 0.940 6 C 0.086 3.914 7 O -0.591 6.591 8 C -0.106 4.106 9 C -0.129 4.129 10 C 0.067 3.933 11 N -0.575 5.575 12 C 0.514 3.486 13 O -0.518 6.518 14 C 0.498 3.502 15 O -0.548 6.548 16 N -0.580 5.580 17 C 0.120 3.880 18 C -0.115 4.115 19 C 0.233 3.767 20 O -0.589 6.589 21 C -0.554 4.554 22 H 0.070 0.930 23 C 0.027 3.973 24 N -0.915 5.915 25 Si 0.966 3.034 26 H -0.265 1.265 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.105 3.895 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.376 0.624 47 H 0.271 0.729 48 H 0.056 0.944 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.309 5.672 -21.849 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.114 0.886 4 C -0.115 4.115 5 H 0.079 0.921 6 C 0.008 3.992 7 O -0.399 6.399 8 C -0.143 4.143 9 C -0.167 4.167 10 C -0.054 4.054 11 N -0.309 5.309 12 C 0.296 3.704 13 O -0.394 6.394 14 C 0.282 3.718 15 O -0.429 6.429 16 N -0.312 5.312 17 C -0.002 4.002 18 C -0.153 4.153 19 C 0.193 3.807 20 O -0.397 6.397 21 C -0.592 4.592 22 H 0.088 0.912 23 C -0.174 4.174 24 N -0.555 5.555 25 Si 0.791 3.209 26 H -0.189 1.189 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.017 4.017 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.226 0.774 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.140 5.408 -21.733 22.425 hybrid contribution 0.678 -0.233 1.144 1.350 sum 1.818 5.175 -20.589 21.307 Atomic orbital electron populations 1.22209 0.92468 1.02886 1.01669 1.21405 0.95896 0.95706 0.82591 0.88638 1.21419 0.97311 0.99754 0.93041 0.92114 1.22138 0.99282 0.93771 0.84026 1.86417 1.85823 1.50508 1.17188 1.21508 0.94055 1.01048 0.97732 1.21921 1.02244 0.98666 0.93890 1.22857 0.77934 1.02926 1.01697 1.47996 1.08502 1.55432 1.18933 1.19805 0.86517 0.79615 0.84478 1.90784 1.15276 1.53977 1.79413 1.20453 0.85827 0.79629 0.85853 1.90458 1.15742 1.58627 1.78077 1.48716 1.09395 1.55597 1.17467 1.22161 0.78148 1.01515 0.98367 1.22740 0.98787 1.01311 0.92461 1.19857 0.89287 0.81501 0.90080 1.86103 1.54293 1.34142 1.65193 1.21793 1.14503 1.13403 1.09474 0.91187 1.25816 0.94142 0.97422 0.99991 1.69761 1.16752 1.33825 1.35121 0.85384 0.78054 0.78892 0.78553 1.18912 1.20690 1.20657 1.23065 1.01205 0.96714 0.80714 0.92614 0.90619 0.92667 0.92140 0.91599 0.75152 0.90458 0.90790 0.88787 0.93004 0.90174 0.86591 0.91119 0.89977 0.88980 0.89717 0.77421 0.91971 0.92514 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 7.40 71.98 0.53 -2.44 16 2 C 0.15 3.01 2.94 44.83 0.13 3.14 16 3 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.10 -1.72 2.02 -10.86 -0.02 -1.74 16 5 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 6 C 0.09 1.08 6.31 71.98 0.45 1.53 16 7 O -0.59 -8.10 13.17 -148.98 -1.96 -10.07 16 8 C -0.11 -1.78 5.08 30.62 0.16 -1.62 16 9 C -0.13 -2.58 6.08 30.67 0.19 -2.39 16 10 C 0.07 1.69 5.98 86.36 0.52 2.20 16 11 N -0.58 -15.69 2.98 -797.37 -2.37 -18.07 16 12 C 0.51 17.45 7.60 87.27 0.66 18.11 16 13 O -0.52 -17.85 9.59 -3.25 -0.03 -17.88 16 14 C 0.50 20.11 7.77 87.27 0.68 20.79 16 15 O -0.55 -23.65 13.44 -3.25 -0.04 -23.69 16 16 N -0.58 -24.65 3.33 -813.20 -2.70 -27.36 16 17 C 0.12 4.53 5.51 86.76 0.48 5.01 16 18 C -0.12 -4.60 6.14 31.82 0.20 -4.40 16 19 C 0.23 11.33 0.88 -10.15 -0.01 11.32 16 20 O -0.59 -30.62 13.17 -148.98 -1.96 -32.58 16 21 C -0.55 -28.47 8.26 25.60 0.21 -28.26 16 22 H 0.07 3.50 7.78 -2.91 -0.02 3.48 16 23 C 0.03 1.40 5.29 84.65 0.45 1.85 16 24 N -0.92 -48.78 10.69 21.45 0.23 -48.55 16 25 Si 0.97 41.17 29.54 68.60 2.03 43.19 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.11 5.08 5.50 86.85 0.48 5.56 16 30 H 0.05 1.46 6.71 -2.39 -0.02 1.44 16 31 H 0.08 1.19 6.42 -2.39 -0.02 1.17 16 32 H 0.05 1.45 6.79 -2.39 -0.02 1.43 16 33 H 0.06 0.66 6.35 -2.38 -0.02 0.65 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.40 1.72 9.12 -74.06 -0.68 1.04 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.07 1.27 7.79 -2.39 -0.02 1.25 16 38 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.12 3.71 4.33 -46.70 -0.20 3.50 16 42 H 0.07 2.70 7.44 -2.39 -0.02 2.69 16 43 H 0.08 2.77 7.83 -2.39 -0.02 2.76 16 44 H 0.09 3.37 8.03 -2.39 -0.02 3.36 16 45 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.38 20.31 7.25 -74.06 -0.54 19.78 16 47 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.06 3.08 7.47 -2.39 -0.02 3.06 16 49 H 0.06 2.83 8.03 -2.38 -0.02 2.82 16 Total: -1.00 -63.03 374.76 -2.14 -65.17 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.42 Total: 41.17 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 5.10 Total: 28.66 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -4.85 Total: -93.97 kcal Atomic # 8 Polarization: -80.23 SS G_CDS: -4.00 Total: -84.22 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.03 -2.14 -65.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326545589.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.210 kcal (2) G-P(sol) polarization free energy of solvation -63.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds